Wall clock time and date at job start Tue Mar 31 2020 06:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47108 * 2 1 4 4 C 1.52996 * 109.46950 * 239.99905 * 2 1 3 5 5 C 1.53003 * 109.47304 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.46609 * 59.99978 * 5 4 2 7 7 C 1.52996 * 109.47461 * 300.00382 * 6 5 4 8 8 C 1.52995 * 109.47236 * 59.99859 * 7 6 5 9 9 H 1.09007 * 109.46945 * 60.00508 * 8 7 6 10 10 C 1.53006 * 109.47234 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47127 * 295.00428 * 10 8 7 12 12 N 1.46496 * 109.47294 * 179.97438 * 11 10 8 13 13 C 1.34779 * 120.00447 * 179.97438 * 12 11 10 14 14 O 1.21588 * 119.99436 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00239 * 180.02562 * 13 12 11 16 16 C 1.46498 * 120.00109 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47345 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47022 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00411 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99851 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00264 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 120.00037 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47173 * 89.99728 * 22 20 18 24 24 H 1.48495 * 109.47087 * 210.00019 * 22 20 18 25 25 H 1.48502 * 109.46811 * 330.00102 * 22 20 18 26 26 H 1.09002 * 109.47044 * 299.99808 * 1 2 3 27 27 H 1.09004 * 109.47376 * 59.99367 * 1 2 3 28 28 H 1.08996 * 109.47552 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46984 * 60.00178 * 4 2 1 30 30 H 1.08996 * 109.47312 * 300.00537 * 4 2 1 31 31 H 1.09001 * 109.46679 * 300.00652 * 5 4 2 32 32 H 1.08992 * 109.47094 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.46971 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47294 * 60.00447 * 6 5 4 35 35 H 1.09006 * 109.46758 * 299.99685 * 7 6 5 36 36 H 1.09003 * 109.47204 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47002 * 55.00002 * 10 8 7 38 38 H 1.08993 * 109.46955 * 175.00440 * 10 8 7 39 39 H 1.09001 * 109.47289 * 299.99953 * 11 10 8 40 40 H 1.09004 * 109.47261 * 59.99697 * 11 10 8 41 41 H 0.97006 * 119.99755 * 359.97438 * 12 11 10 42 42 H 0.97006 * 119.99964 * 359.97438 * 15 13 12 43 43 H 1.08998 * 109.47007 * 300.00287 * 16 15 13 44 44 H 1.09005 * 109.46743 * 59.99783 * 16 15 13 45 45 H 1.08995 * 109.47120 * 300.00387 * 17 16 15 46 46 H 1.09003 * 109.46554 * 60.00286 * 17 16 15 47 47 H 0.97000 * 120.00150 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2490 6 6 4.0794 -1.4435 0.0003 7 6 3.5694 -0.7223 1.2495 8 6 2.0394 -0.7217 1.2492 9 1 1.6757 -1.7493 1.2490 10 6 1.5294 0.0001 2.4982 11 6 1.9336 -0.7899 3.7445 12 7 1.4458 -0.0985 4.9404 13 6 1.6855 -0.6147 6.1622 14 8 2.3069 -1.6540 6.2718 15 7 1.2362 0.0211 7.2623 16 6 1.4962 -0.5402 8.5903 17 6 0.8843 0.3696 9.6574 18 6 1.1512 -0.2082 11.0233 19 1 1.7026 -1.1317 11.1207 20 6 0.6916 0.4421 12.1488 21 7 0.9250 -0.0618 13.3410 22 14 -0.2627 2.0392 11.9804 23 1 -1.7125 1.7397 11.8645 24 1 -0.0262 2.8857 13.1774 25 1 0.1921 2.7618 10.7654 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6766 -0.2074 -2.1392 30 1 1.6765 -1.7489 -1.2493 31 1 3.9336 0.3057 -1.2487 32 1 3.9332 -1.2361 -2.1387 33 1 5.1694 -1.4436 0.0008 34 1 3.7157 -2.4710 0.0001 35 1 3.9332 0.3052 1.2498 36 1 3.9327 -1.2362 2.1395 37 1 1.9644 0.9985 2.5439 38 1 0.4432 0.0787 2.4542 39 1 1.4987 -1.7883 3.6988 40 1 3.0199 -0.8685 3.7884 41 1 0.9503 0.7309 4.8530 42 1 0.7407 0.8505 7.1749 43 1 1.0503 -1.5324 8.6590 44 1 2.5721 -0.6137 8.7494 45 1 1.3306 1.3616 9.5885 46 1 -0.1915 0.4434 9.4984 47 1 0.6012 0.3955 14.1327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343747598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:26 Heat of formation + Delta-G solvation = -79.416495 kcal Electronic energy + Delta-G solvation = -21885.535992 eV Core-core repulsion = 18680.258119 eV Total energy + Delta-G solvation = -3205.277873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.89353 -39.28747 -35.65200 -34.68103 -33.22305 -32.80730 -32.29237 -30.10368 -28.37483 -26.45925 -24.88501 -23.66164 -21.65470 -21.11854 -20.77561 -20.57332 -19.99704 -17.91857 -16.86509 -16.11656 -15.74464 -15.24276 -14.98110 -14.75408 -14.58116 -14.28942 -14.13089 -13.87268 -13.69348 -13.61013 -13.14238 -12.64166 -12.58315 -12.32419 -12.10589 -11.94729 -11.77766 -11.57554 -11.45173 -11.24368 -11.18250 -11.08744 -10.73915 -10.36140 -10.30101 -10.23060 -10.19690 -9.95318 -9.71338 -9.30042 -9.00481 -8.60668 -8.33256 -6.08997 -4.08813 3.03139 3.26442 3.33901 3.35382 3.57879 4.25262 4.31216 4.35352 4.39354 4.62452 4.69481 4.71219 4.95122 5.00362 5.04890 5.10091 5.15633 5.22229 5.23861 5.29885 5.39062 5.46197 5.49691 5.57030 5.66973 5.70761 5.77096 5.84520 5.87756 5.91285 5.94179 6.01756 6.09130 6.13685 6.21691 6.28251 6.59217 6.64598 6.86073 7.08904 7.27588 7.34145 7.69904 8.34633 8.48753 8.94793 8.97576 9.51142 11.04054 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038848 B = 0.002350 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.578908 B =11910.050716 C =12359.391220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 H 0.069 0.931 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.077 4.077 9 H 0.074 0.926 10 C -0.130 4.130 11 C 0.139 3.861 12 N -0.754 5.754 13 C 0.698 3.302 14 O -0.596 6.596 15 N -0.743 5.743 16 C 0.148 3.852 17 C -0.022 4.022 18 C -0.521 4.521 19 H 0.076 0.924 20 C 0.068 3.932 21 N -0.899 5.899 22 Si 0.883 3.117 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.266 1.266 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.393 0.607 42 H 0.391 0.609 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.021 0.979 46 H 0.017 0.983 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.626 2.987 -31.488 31.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.158 4.158 7 C -0.157 4.157 8 C -0.096 4.096 9 H 0.092 0.908 10 C -0.167 4.167 11 C 0.014 3.986 12 N -0.411 5.411 13 C 0.397 3.603 14 O -0.474 6.474 15 N -0.397 5.397 16 C 0.025 3.975 17 C -0.059 4.059 18 C -0.560 4.560 19 H 0.094 0.906 20 C -0.134 4.134 21 N -0.537 5.537 22 Si 0.710 3.290 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.226 0.774 42 H 0.224 0.776 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.040 0.960 46 H 0.035 0.965 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.194 2.018 -31.152 31.240 hybrid contribution -1.008 1.636 0.026 1.922 sum 0.186 3.654 -31.126 31.340 Atomic orbital electron populations 1.21921 0.95311 1.01948 1.01713 1.21135 0.95386 0.99538 0.94335 0.91243 1.21592 0.95503 1.00717 0.97359 1.21542 0.95691 1.00702 0.97833 1.21536 1.00203 0.99493 0.94549 1.21682 0.94935 1.00986 0.98107 1.21104 0.95444 0.99779 0.93264 0.90802 1.21931 1.01744 0.99602 0.93459 1.21189 0.99443 0.95654 0.82299 1.45154 1.62321 1.28717 1.04913 1.16054 0.80109 0.83664 0.80424 1.90901 1.46238 1.24330 1.85938 1.45522 1.60080 1.27889 1.06211 1.21364 1.00535 0.97565 0.77994 1.19795 0.95863 0.95622 0.94660 1.20925 1.36506 1.10337 0.88211 0.90579 1.25009 0.95678 0.97520 0.95166 1.69907 1.46333 1.39736 0.97742 0.86739 0.80529 0.83921 0.77791 1.20264 1.21310 1.19111 0.92220 0.92904 0.92653 0.92182 0.91984 0.92119 0.92260 0.92092 0.91978 0.91938 0.91320 0.91342 0.90887 0.91997 0.91693 0.77435 0.77636 0.92204 0.92188 0.96048 0.96488 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.85 37.16 0.33 -0.56 16 2 C -0.09 -0.52 2.25 -90.62 -0.20 -0.73 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.11 -0.67 5.20 -26.73 -0.14 -0.81 16 5 C -0.12 -0.72 5.92 -26.73 -0.16 -0.87 16 6 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 7 C -0.12 -0.87 4.96 -26.74 -0.13 -1.00 16 8 C -0.08 -0.53 1.72 -90.62 -0.16 -0.69 16 9 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 10 C -0.13 -0.96 4.58 -26.73 -0.12 -1.08 16 11 C 0.14 1.50 5.43 -4.05 -0.02 1.47 16 12 N -0.75 -9.30 5.56 -65.23 -0.36 -9.67 16 13 C 0.70 12.14 8.57 -86.92 -0.74 11.39 16 14 O -0.60 -12.97 16.34 5.29 0.09 -12.88 16 15 N -0.74 -12.73 5.56 -65.22 -0.36 -13.09 16 16 C 0.15 3.13 5.61 -4.04 -0.02 3.11 16 17 C -0.02 -0.50 4.15 -27.88 -0.12 -0.62 16 18 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 19 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 22 Si 0.88 21.17 27.47 -169.99 -4.67 16.51 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 26 H 0.06 0.35 6.32 -51.93 -0.33 0.02 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.57 6.57 -51.93 -0.34 0.22 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.50 6.17 -51.93 -0.32 0.18 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 41 H 0.39 3.65 8.49 -40.82 -0.35 3.30 16 42 H 0.39 5.50 8.49 -40.82 -0.35 5.15 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 46 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -33.01 363.73 -9.85 -42.86 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -8.72 Total: 2.13 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.08 Total: -4.57 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.05 Total: -49.52 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.01 -9.85 -42.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343747598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.554 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds