Wall clock time and date at job start Tue Mar 31 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46670 * 2 1 4 4 C 1.52998 * 109.47221 * 119.99528 * 2 1 3 5 5 C 1.52994 * 109.47086 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47278 * 300.00207 * 5 4 2 7 7 C 1.52998 * 109.47231 * 59.99881 * 6 5 4 8 8 C 1.52994 * 109.47086 * 300.00236 * 7 6 5 9 9 H 1.08996 * 109.47395 * 299.99684 * 8 7 6 10 10 C 1.53003 * 109.47224 * 179.97438 * 8 7 6 11 11 C 1.53005 * 109.46696 * 65.00029 * 10 8 7 12 12 N 1.46497 * 109.46704 * 180.02562 * 11 10 8 13 13 C 1.34781 * 120.00103 * 180.02562 * 12 11 10 14 14 O 1.21593 * 119.99684 * 359.97438 * 13 12 11 15 15 N 1.34770 * 120.00528 * 180.02562 * 13 12 11 16 16 C 1.46493 * 120.00393 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47400 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47159 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 H 1.09002 * 109.46670 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47740 * 300.00070 * 1 2 3 28 28 H 1.08998 * 109.46972 * 60.00706 * 1 2 3 29 29 H 1.08997 * 109.47107 * 300.00243 * 4 2 1 30 30 H 1.09002 * 109.46913 * 60.00621 * 4 2 1 31 31 H 1.08996 * 109.47395 * 60.00316 * 5 4 2 32 32 H 1.09003 * 109.47030 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47263 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.46804 * 299.99682 * 6 5 4 35 35 H 1.08997 * 109.47107 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.46913 * 59.99923 * 7 6 5 37 37 H 1.08995 * 109.46904 * 305.00061 * 10 8 7 38 38 H 1.09001 * 109.47205 * 184.99914 * 10 8 7 39 39 H 1.08995 * 109.46981 * 60.00039 * 11 10 8 40 40 H 1.09001 * 109.47199 * 299.99888 * 11 10 8 41 41 H 0.97000 * 120.00583 * 359.97438 * 12 11 10 42 42 H 0.97000 * 119.99567 * 359.97438 * 15 13 12 43 43 H 1.09004 * 109.46794 * 59.99777 * 16 15 13 44 44 H 1.09000 * 109.47559 * 300.00254 * 16 15 13 45 45 H 1.09004 * 109.47066 * 60.00265 * 17 16 15 46 46 H 1.08994 * 109.47405 * 300.00096 * 17 16 15 47 47 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0805 -1.4415 0.0003 7 6 3.5705 -0.7204 -1.2489 8 6 2.0405 -0.7209 -1.2492 9 1 1.6776 -1.7487 -1.2494 10 6 1.5305 0.0008 -2.4982 11 6 1.9358 -0.7887 -3.7446 12 7 1.4480 -0.0974 -4.9405 13 6 1.6885 -0.6131 -6.1623 14 8 2.3108 -1.6520 -6.2719 15 7 1.2402 0.0231 -7.2625 16 6 1.5020 -0.5372 -8.5905 17 6 0.8897 0.3722 -9.6576 18 6 1.1586 -0.2045 -11.0237 19 1 1.7107 -1.1276 -11.1211 20 6 0.6944 0.4431 -12.1490 21 7 0.0218 1.5670 -12.0305 22 14 1.0211 -0.2758 -13.8419 23 1 1.7927 -1.5370 -13.7036 24 1 -0.2709 -0.5581 -14.5175 25 1 1.8006 0.6958 -14.6504 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.6767 -0.2073 2.1392 30 1 1.6768 -1.7488 1.2493 31 1 3.9329 0.3072 1.2498 32 1 3.9333 -1.2347 2.1394 33 1 5.1705 -1.4415 0.0008 34 1 3.7176 -2.4693 0.0002 35 1 3.9338 -1.2342 -2.1388 36 1 3.9334 0.3075 -1.2487 37 1 1.9647 0.9995 -2.5435 38 1 0.4441 0.0785 -2.4547 39 1 1.5016 -1.7874 -3.6992 40 1 3.0222 -0.8665 -3.7881 41 1 0.9512 0.7312 -4.8531 42 1 0.7440 0.8520 -7.1751 43 1 1.0567 -1.5297 -8.6604 44 1 2.5781 -0.6099 -8.7485 45 1 1.3346 1.3649 -9.5879 46 1 -0.1863 0.4445 -9.4996 47 1 -0.3044 2.0228 -12.8222 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343747599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:29 Heat of formation + Delta-G solvation = -83.800465 kcal Electronic energy + Delta-G solvation = -21829.462403 eV Core-core repulsion = 18623.994427 eV Total energy + Delta-G solvation = -3205.467976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.83666 -39.21951 -35.56232 -34.57286 -33.18439 -32.82797 -32.25550 -29.67623 -28.22921 -26.40138 -24.77162 -23.66312 -21.65196 -21.07528 -20.97885 -20.46928 -19.96138 -17.87325 -16.39787 -16.01191 -15.68207 -15.20614 -14.92464 -14.69971 -14.51120 -14.48439 -14.14227 -13.84777 -13.58632 -13.45650 -13.00769 -12.57893 -12.32396 -12.24040 -12.06767 -11.90398 -11.73761 -11.52170 -11.19749 -11.15107 -11.09225 -11.01257 -10.70729 -10.59628 -10.29623 -10.26046 -10.16737 -9.87296 -9.52446 -9.21870 -8.93433 -8.46121 -8.19398 -6.07463 -4.09721 3.11799 3.29908 3.37492 3.43300 3.66063 4.28618 4.34430 4.38152 4.43031 4.70793 4.74241 4.76546 4.98902 5.03846 5.08891 5.13340 5.18725 5.25544 5.29727 5.33651 5.42221 5.49814 5.53548 5.60119 5.70277 5.73834 5.80586 5.87445 5.91498 5.94670 5.97825 6.05023 6.13782 6.24876 6.34593 6.43634 6.68954 6.81653 7.05392 7.30140 7.60294 7.66248 7.92285 8.28909 8.49569 8.95792 9.06152 9.54880 11.04285 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045879 B = 0.002210 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.157182 B =12664.599489 C =13049.280204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 H 0.069 0.931 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.077 4.077 9 H 0.073 0.927 10 C -0.130 4.130 11 C 0.139 3.861 12 N -0.755 5.755 13 C 0.697 3.303 14 O -0.600 6.600 15 N -0.740 5.740 16 C 0.140 3.860 17 C 0.012 3.988 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.393 0.607 42 H 0.393 0.607 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.636 -0.730 28.192 28.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.158 4.158 7 C -0.157 4.157 8 C -0.096 4.096 9 H 0.092 0.908 10 C -0.168 4.168 11 C 0.015 3.985 12 N -0.411 5.411 13 C 0.397 3.603 14 O -0.479 6.479 15 N -0.393 5.393 16 C 0.017 3.983 17 C -0.025 4.025 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.226 0.774 42 H 0.226 0.774 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.140 -1.590 27.950 28.171 hybrid contribution -0.386 0.539 -0.893 1.112 sum 2.754 -1.051 27.058 27.218 Atomic orbital electron populations 1.21919 0.95296 1.01937 1.01738 1.21137 0.95399 0.99549 0.94319 0.91236 1.21590 0.95487 1.00709 0.97376 1.21541 0.95705 1.00706 0.97811 1.21536 1.00176 0.99486 0.94575 1.21681 0.94965 1.00986 0.98072 1.21102 0.95417 0.99770 0.93293 0.90834 1.21933 1.01764 0.99618 0.93440 1.21174 0.99375 0.95627 0.82365 1.45154 1.62278 1.28815 1.04895 1.16089 0.80113 0.83659 0.80471 1.90884 1.46458 1.24508 1.86014 1.45529 1.59781 1.27909 1.06094 1.21575 1.00117 0.97860 0.78725 1.19331 0.96339 0.94744 0.92101 1.21104 1.35349 1.08807 0.90521 0.92155 1.25008 0.94995 0.94924 0.99492 1.69971 1.37240 1.16673 1.29498 0.86451 0.78002 0.79235 0.83842 1.19563 1.20969 1.20961 0.92673 0.92909 0.92178 0.92192 0.91995 0.92112 0.92286 0.92115 0.92004 0.91329 0.91921 0.91320 0.90869 0.92080 0.91767 0.77387 0.77445 0.92840 0.92829 0.95980 0.95977 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.85 37.16 0.33 -0.61 16 2 C -0.09 -0.55 2.25 -90.62 -0.20 -0.75 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.11 -0.70 5.20 -26.73 -0.14 -0.84 16 5 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 6 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 7 C -0.12 -0.90 4.96 -26.73 -0.13 -1.03 16 8 C -0.08 -0.56 1.72 -90.62 -0.16 -0.71 16 9 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 10 C -0.13 -1.02 4.58 -26.73 -0.12 -1.14 16 11 C 0.14 1.58 5.43 -4.04 -0.02 1.55 16 12 N -0.75 -9.86 5.56 -65.23 -0.36 -10.22 16 13 C 0.70 12.67 8.57 -86.92 -0.74 11.93 16 14 O -0.60 -13.40 16.34 5.28 0.09 -13.31 16 15 N -0.74 -13.50 5.56 -65.23 -0.36 -13.86 16 16 C 0.14 3.09 5.61 -4.05 -0.02 3.07 16 17 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 18 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 19 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 22 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.37 6.32 -51.93 -0.33 0.04 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.59 6.56 -51.93 -0.34 0.24 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.54 6.17 -51.93 -0.32 0.22 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16 41 H 0.39 3.99 8.49 -40.82 -0.35 3.64 16 42 H 0.39 6.13 8.49 -40.82 -0.35 5.78 16 43 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -32.34 367.34 -10.22 -42.56 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -8.75 Total: 1.98 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -2.08 Total: -3.63 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.01 Total: -49.69 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.34 -10.22 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343747599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.243 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds