Wall clock time and date at job start Tue Mar 31 2020 06:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.52744 * 2 1 4 4 C 1.52760 * 109.56535 * 240.04972 * 2 1 3 5 5 N 1.46923 * 109.01335 * 185.55569 * 4 2 1 6 6 C 1.34781 * 120.63081 * 233.58744 * 5 4 2 7 7 O 1.21582 * 119.99859 * 184.74045 * 6 5 4 8 8 N 1.34778 * 119.99804 * 4.73849 * 6 5 4 9 9 C 1.46500 * 119.99846 * 174.92738 * 8 6 5 10 10 C 1.52994 * 109.47063 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47207 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47189 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00493 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99780 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99700 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00103 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.46945 * 90.00107 * 16 14 12 18 18 H 1.48498 * 109.46825 * 209.99748 * 16 14 12 19 19 H 1.48496 * 109.47144 * 330.00032 * 16 14 12 20 20 C 1.46924 * 118.73842 * 53.30351 * 5 4 2 21 21 C 1.53189 * 108.77778 * 306.64599 * 20 5 4 22 22 C 1.53004 * 109.49792 * 174.58185 * 21 20 5 23 23 C 1.53004 * 109.50099 * 294.65321 * 21 20 5 24 24 C 1.53037 * 109.49821 * 120.08463 * 2 1 3 25 25 H 1.08999 * 109.46963 * 299.91554 * 1 2 3 26 26 H 1.09004 * 109.47209 * 59.91324 * 1 2 3 27 27 H 1.08995 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.51285 * 65.67072 * 4 2 1 29 29 H 1.09003 * 109.43223 * 305.39277 * 4 2 1 30 30 H 0.97000 * 120.00223 * 354.92380 * 8 6 5 31 31 H 1.09003 * 109.47148 * 59.99891 * 9 8 6 32 32 H 1.09004 * 109.47035 * 299.99653 * 9 8 6 33 33 H 1.09000 * 109.47739 * 299.99973 * 10 9 8 34 34 H 1.09003 * 109.47102 * 60.00016 * 10 9 8 35 35 H 1.09000 * 109.47538 * 300.00508 * 11 10 9 36 36 H 1.09003 * 109.46745 * 60.00204 * 11 10 9 37 37 H 0.97005 * 119.99718 * 179.97438 * 15 14 12 38 38 H 1.08993 * 109.58635 * 66.43610 * 20 5 4 39 39 H 1.09002 * 109.58496 * 186.85864 * 20 5 4 40 40 H 1.09004 * 109.46400 * 60.00619 * 22 21 20 41 41 H 1.09009 * 109.46986 * 179.97438 * 22 21 20 42 42 H 1.08993 * 109.47195 * 300.00225 * 22 21 20 43 43 H 1.08999 * 109.47125 * 59.99680 * 23 21 20 44 44 H 1.08997 * 109.47016 * 179.97438 * 23 21 20 45 45 H 1.09000 * 109.46677 * 299.99378 * 23 21 20 46 46 H 1.08998 * 109.46365 * 61.29414 * 24 2 1 47 47 H 1.08999 * 109.46246 * 301.33611 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0415 -0.7186 -1.2472 5 7 3.5045 -0.8292 -1.1697 6 6 4.2811 -0.3855 -2.1780 7 8 5.4838 -0.5601 -2.1411 8 7 3.7244 0.2516 -3.2271 9 6 4.5767 0.8314 -4.2682 10 6 3.7009 1.4904 -5.3357 11 6 4.5910 2.0965 -6.4226 12 6 3.7284 2.7462 -7.4737 13 1 2.6530 2.7290 -7.3761 14 6 4.3122 3.3627 -8.5601 15 7 3.5594 3.9293 -9.4777 16 14 6.1723 3.3919 -8.7294 17 1 6.6196 2.1932 -9.4833 18 1 6.5837 4.6178 -9.4595 19 1 6.7923 3.3878 -7.3800 20 6 4.1052 -1.4267 0.0306 21 6 3.5709 -0.6951 1.2659 22 6 4.0798 -1.3896 2.5307 23 6 4.0559 0.7559 1.2496 24 6 2.0408 -0.7231 1.2483 25 1 -0.3633 0.5125 0.8907 26 1 -0.3634 0.5152 -0.8892 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7646 -0.1495 -2.1346 29 1 1.6020 -1.7148 -1.2976 30 1 2.7596 0.3262 -3.2930 31 1 5.1771 0.0452 -4.7259 32 1 5.2342 1.5792 -3.8247 33 1 3.0436 0.7425 -5.7791 34 1 3.1002 2.2766 -4.8782 35 1 5.2480 2.8446 -5.9790 36 1 5.1920 1.3106 -6.8801 37 1 3.9702 4.3633 -10.2418 38 1 3.8375 -2.4818 0.0866 39 1 5.1895 -1.3247 -0.0139 40 1 5.1696 -1.3718 2.5413 41 1 3.6997 -0.8683 3.4094 42 1 3.7330 -2.4228 2.5424 43 1 3.6921 1.2506 0.3490 44 1 3.6751 1.2762 2.1285 45 1 5.1457 0.7748 1.2597 46 1 1.6967 -1.7573 1.2352 47 1 1.6582 -0.2246 2.1389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343810021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:28 Heat of formation + Delta-G solvation = -55.901384 kcal Electronic energy + Delta-G solvation = -22981.909729 eV Core-core repulsion = 19777.651548 eV Total energy + Delta-G solvation = -3204.258181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.77273 -38.58621 -35.54817 -34.80319 -33.66733 -33.15462 -31.31891 -27.68433 -27.56600 -27.02447 -26.75795 -25.32009 -22.68009 -21.14912 -20.58506 -19.89020 -18.75197 -18.03440 -16.75679 -16.25557 -15.77081 -15.41697 -14.92211 -14.63663 -14.52155 -14.30985 -14.00593 -13.61758 -13.53788 -13.23817 -12.69697 -12.67501 -12.47713 -12.27988 -12.17982 -12.01405 -11.84215 -11.80841 -11.69404 -11.18602 -11.12150 -10.99071 -10.87250 -10.63352 -10.52874 -10.18215 -9.96370 -9.79957 -9.64819 -9.21554 -8.95055 -8.54524 -8.46206 -6.05482 -4.04014 2.68390 3.31176 3.32576 3.39974 3.44794 3.93686 4.30939 4.39700 4.45630 4.47942 4.57642 4.86644 4.96217 5.08394 5.20103 5.26500 5.28841 5.29954 5.34977 5.42181 5.46419 5.55740 5.57056 5.62736 5.66428 5.71514 5.72768 5.75654 5.81460 5.91897 5.96086 6.02917 6.06343 6.19873 6.36940 6.46306 6.49121 6.72975 6.85285 7.00244 7.25063 7.38433 7.76826 8.05584 8.51202 8.71700 8.98405 9.56970 11.07780 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027681 B = 0.003175 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.274023 B = 8817.830930 C = 9424.779574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 H 0.080 0.920 4 C 0.116 3.884 5 N -0.630 5.630 6 C 0.705 3.295 7 O -0.592 6.592 8 N -0.743 5.743 9 C 0.132 3.868 10 C -0.112 4.112 11 C -0.011 4.011 12 C -0.521 4.521 13 H 0.072 0.928 14 C 0.066 3.934 15 N -0.904 5.904 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 C 0.140 3.860 21 C -0.082 4.082 22 C -0.139 4.139 23 C -0.139 4.139 24 C -0.101 4.101 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.394 0.606 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.019 0.981 36 H 0.015 0.985 37 H 0.263 0.737 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.040 -10.912 24.941 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 H 0.098 0.902 4 C -0.007 4.007 5 N -0.368 5.368 6 C 0.407 3.593 7 O -0.471 6.471 8 N -0.399 5.399 9 C 0.009 3.991 10 C -0.150 4.150 11 C -0.049 4.049 12 C -0.559 4.559 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.543 5.543 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.189 1.189 20 C 0.017 3.983 21 C -0.083 4.083 22 C -0.196 4.196 23 C -0.196 4.196 24 C -0.138 4.138 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.230 0.770 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.115 -10.918 24.756 27.368 hybrid contribution 0.342 0.163 -0.307 0.488 sum -3.773 -10.756 24.450 26.976 Atomic orbital electron populations 1.21777 0.94299 1.02052 1.02253 1.21510 0.95865 1.00683 0.95010 0.90184 1.21599 0.80239 1.00651 0.98261 1.47202 1.05744 1.65342 1.18480 1.15886 0.85047 0.78399 0.79980 1.90894 1.12958 1.63184 1.80039 1.45518 1.10290 1.60115 1.24024 1.21509 0.93263 0.97065 0.87292 1.21699 0.98624 0.99297 0.95426 1.19498 0.95736 0.95788 0.93839 1.21100 0.94816 1.35038 1.04982 0.91031 1.25030 0.98155 0.94781 0.95523 1.69917 1.35406 1.37353 1.11597 0.86774 0.86212 0.77595 0.78722 1.20233 1.21392 1.18858 1.21490 0.99543 0.95341 0.81929 1.20959 0.95614 0.96550 0.95162 1.21795 1.01334 1.00163 0.96351 1.21853 1.01145 0.94883 1.01703 1.21630 0.94150 1.00599 0.97463 0.92323 0.92189 0.92499 0.90342 0.91425 0.77020 0.91941 0.92100 0.92203 0.92217 0.96295 0.96705 0.92713 0.92047 0.88909 0.92304 0.92346 0.92520 0.92234 0.92874 0.92637 0.91789 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.20 37.16 0.34 -0.54 16 2 C -0.11 -0.83 2.52 -90.73 -0.23 -1.05 16 3 H 0.08 0.69 6.33 -51.93 -0.33 0.36 16 4 C 0.12 1.01 5.69 -3.93 -0.02 0.99 16 5 N -0.63 -7.34 2.42 -178.77 -0.43 -7.77 16 6 C 0.71 10.99 8.30 -86.91 -0.72 10.27 16 7 O -0.59 -11.57 15.78 5.29 0.08 -11.48 16 8 N -0.74 -10.93 5.47 -65.22 -0.36 -11.28 16 9 C 0.13 2.28 5.68 -4.04 -0.02 2.26 16 10 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 11 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 12 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 13 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 16 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 20 C 0.14 1.45 5.10 -3.71 -0.02 1.43 16 21 C -0.08 -0.66 0.77 -154.38 -0.12 -0.78 16 22 C -0.14 -0.92 8.48 37.16 0.32 -0.60 16 23 C -0.14 -1.29 7.99 37.16 0.30 -1.00 16 24 C -0.10 -0.70 4.00 -26.69 -0.11 -0.80 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.66 5.57 -51.93 -0.29 0.37 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.39 4.80 5.93 -40.82 -0.24 4.55 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 36 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.16 7.03 -51.93 -0.37 0.79 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.65 5.97 -51.93 -0.31 0.34 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -32.83 360.19 -8.80 -41.62 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -8.65 Total: -0.90 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -0.97 Total: -5.73 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.02 Total: -46.17 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.08 Total: -11.48 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.83 -8.80 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343810021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.281 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds