Wall clock time and date at job start Tue Mar 31 2020 06:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.52744 * 2 1 4 4 C 1.52760 * 109.56535 * 240.04972 * 2 1 3 5 5 N 1.46923 * 109.01335 * 185.55569 * 4 2 1 6 6 C 1.34781 * 120.63081 * 233.58744 * 5 4 2 7 7 O 1.21582 * 119.99859 * 184.74045 * 6 5 4 8 8 N 1.34778 * 119.99804 * 4.73849 * 6 5 4 9 9 C 1.46500 * 119.99846 * 174.92738 * 8 6 5 10 10 C 1.52994 * 109.47063 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47207 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47189 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00493 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99780 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99700 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00103 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.46945 * 90.00107 * 16 14 12 18 18 H 1.48498 * 109.46825 * 209.99748 * 16 14 12 19 19 H 1.48496 * 109.47144 * 330.00032 * 16 14 12 20 20 C 1.46924 * 118.73842 * 53.30351 * 5 4 2 21 21 C 1.53189 * 108.77778 * 306.64599 * 20 5 4 22 22 C 1.53004 * 109.49792 * 174.58185 * 21 20 5 23 23 C 1.53004 * 109.50099 * 294.65321 * 21 20 5 24 24 C 1.53037 * 109.49821 * 120.08463 * 2 1 3 25 25 H 1.08999 * 109.46963 * 299.91554 * 1 2 3 26 26 H 1.09004 * 109.47209 * 59.91324 * 1 2 3 27 27 H 1.08995 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.51285 * 65.67072 * 4 2 1 29 29 H 1.09003 * 109.43223 * 305.39277 * 4 2 1 30 30 H 0.97000 * 120.00223 * 354.92380 * 8 6 5 31 31 H 1.09003 * 109.47148 * 59.99891 * 9 8 6 32 32 H 1.09004 * 109.47035 * 299.99653 * 9 8 6 33 33 H 1.09000 * 109.47739 * 299.99973 * 10 9 8 34 34 H 1.09003 * 109.47102 * 60.00016 * 10 9 8 35 35 H 1.09000 * 109.47538 * 300.00508 * 11 10 9 36 36 H 1.09003 * 109.46745 * 60.00204 * 11 10 9 37 37 H 0.97005 * 119.99718 * 179.97438 * 15 14 12 38 38 H 1.08993 * 109.58635 * 66.43610 * 20 5 4 39 39 H 1.09002 * 109.58496 * 186.85864 * 20 5 4 40 40 H 1.09004 * 109.46400 * 60.00619 * 22 21 20 41 41 H 1.09009 * 109.46986 * 179.97438 * 22 21 20 42 42 H 1.08993 * 109.47195 * 300.00225 * 22 21 20 43 43 H 1.08999 * 109.47125 * 59.99680 * 23 21 20 44 44 H 1.08997 * 109.47016 * 179.97438 * 23 21 20 45 45 H 1.09000 * 109.46677 * 299.99378 * 23 21 20 46 46 H 1.08998 * 109.46365 * 61.29414 * 24 2 1 47 47 H 1.08999 * 109.46246 * 301.33611 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0415 -0.7186 -1.2472 5 7 3.5045 -0.8292 -1.1697 6 6 4.2811 -0.3855 -2.1780 7 8 5.4838 -0.5601 -2.1411 8 7 3.7244 0.2516 -3.2271 9 6 4.5767 0.8314 -4.2682 10 6 3.7009 1.4904 -5.3357 11 6 4.5910 2.0965 -6.4226 12 6 3.7284 2.7462 -7.4737 13 1 2.6530 2.7290 -7.3761 14 6 4.3122 3.3627 -8.5601 15 7 3.5594 3.9293 -9.4777 16 14 6.1723 3.3919 -8.7294 17 1 6.6196 2.1932 -9.4833 18 1 6.5837 4.6178 -9.4595 19 1 6.7923 3.3878 -7.3800 20 6 4.1052 -1.4267 0.0306 21 6 3.5709 -0.6951 1.2659 22 6 4.0798 -1.3896 2.5307 23 6 4.0559 0.7559 1.2496 24 6 2.0408 -0.7231 1.2483 25 1 -0.3633 0.5125 0.8907 26 1 -0.3634 0.5152 -0.8892 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7646 -0.1495 -2.1346 29 1 1.6020 -1.7148 -1.2976 30 1 2.7596 0.3262 -3.2930 31 1 5.1771 0.0452 -4.7259 32 1 5.2342 1.5792 -3.8247 33 1 3.0436 0.7425 -5.7791 34 1 3.1002 2.2766 -4.8782 35 1 5.2480 2.8446 -5.9790 36 1 5.1920 1.3106 -6.8801 37 1 3.9702 4.3633 -10.2418 38 1 3.8375 -2.4818 0.0866 39 1 5.1895 -1.3247 -0.0139 40 1 5.1696 -1.3718 2.5413 41 1 3.6997 -0.8683 3.4094 42 1 3.7330 -2.4228 2.5424 43 1 3.6921 1.2506 0.3490 44 1 3.6751 1.2762 2.1285 45 1 5.1457 0.7748 1.2597 46 1 1.6967 -1.7573 1.2352 47 1 1.6582 -0.2246 2.1389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343810021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:27 Heat of formation + Delta-G solvation = -75.559469 kcal Electronic energy + Delta-G solvation = -22982.762168 eV Core-core repulsion = 19777.651548 eV Total energy + Delta-G solvation = -3205.110620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.73621 -39.57221 -37.03027 -35.71447 -34.96170 -34.48158 -33.11810 -29.20277 -28.25611 -27.68773 -27.52728 -26.40411 -24.34414 -22.26057 -21.74282 -21.08829 -19.54597 -19.20701 -18.75004 -17.41035 -16.90800 -16.34193 -16.18830 -15.84696 -15.57001 -15.47735 -15.17430 -14.77598 -14.64877 -14.41383 -13.96538 -13.78401 -13.62374 -13.21327 -13.05459 -12.92116 -12.84285 -12.71360 -12.66124 -12.52203 -12.32587 -11.91503 -11.81964 -11.79900 -11.77505 -11.60336 -11.34447 -11.32715 -11.22064 -11.00697 -10.76195 -10.21896 -9.43891 -8.29575 -6.33267 1.36957 1.38450 1.50498 1.62593 2.10845 2.36410 2.91719 3.06264 3.64379 3.75282 3.83956 3.92739 4.07226 4.19328 4.20172 4.30982 4.44474 4.49268 4.57607 4.64151 4.66665 4.75410 4.80293 4.85925 4.87283 4.89376 4.92753 4.96842 5.03090 5.10615 5.11543 5.12696 5.24365 5.33969 5.35621 5.39886 5.44027 5.50387 5.55254 5.55956 5.59204 5.65718 5.94043 6.27400 6.74432 6.94491 7.31555 7.52898 8.86840 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027681 B = 0.003175 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.274023 B = 8817.830930 C = 9424.779574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 H 0.065 0.935 4 C 0.110 3.890 5 N -0.623 5.623 6 C 0.700 3.300 7 O -0.637 6.637 8 N -0.735 5.735 9 C 0.146 3.854 10 C -0.098 4.098 11 C -0.011 4.011 12 C -0.530 4.530 13 H 0.038 0.962 14 C 0.005 3.995 15 N -0.950 5.950 16 Si 0.946 3.054 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.249 1.249 20 C 0.136 3.864 21 C -0.076 4.076 22 C -0.135 4.135 23 C -0.136 4.136 24 C -0.097 4.097 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.407 0.593 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.019 0.981 37 H 0.266 0.734 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.040 0.960 44 H 0.067 0.933 45 H 0.038 0.962 46 H 0.076 0.924 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 -12.017 26.879 29.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 H 0.084 0.916 4 C -0.013 4.013 5 N -0.358 5.358 6 C 0.401 3.599 7 O -0.519 6.519 8 N -0.393 5.393 9 C 0.022 3.978 10 C -0.136 4.136 11 C -0.049 4.049 12 C -0.568 4.568 13 H 0.057 0.943 14 C -0.191 4.191 15 N -0.591 5.591 16 Si 0.770 3.230 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.172 1.172 20 C 0.013 3.987 21 C -0.077 4.077 22 C -0.193 4.193 23 C -0.194 4.194 24 C -0.134 4.134 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.245 0.755 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.057 0.943 46 H 0.095 0.905 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.513 -12.039 26.736 29.667 hybrid contribution 0.345 0.499 -0.880 1.069 sum -4.168 -11.541 25.856 28.620 Atomic orbital electron populations 1.21740 0.92878 1.02804 1.02502 1.21458 0.96885 0.99697 0.94576 0.91629 1.21869 0.78194 1.01976 0.99217 1.47260 1.06864 1.64067 1.17646 1.16059 0.84755 0.78433 0.80627 1.90860 1.15066 1.64960 1.81048 1.45264 1.10737 1.59878 1.23448 1.21144 0.92894 0.96507 0.87277 1.21463 0.98038 0.99427 0.94653 1.19456 0.95774 0.95784 0.93909 1.21452 0.94033 1.35026 1.06269 0.94331 1.25968 1.03476 0.94483 0.95215 1.70058 1.37740 1.38764 1.12532 0.85710 0.79870 0.77941 0.79476 1.19243 1.20963 1.17223 1.21637 0.98163 0.96555 0.82332 1.20928 0.96681 0.95366 0.94712 1.21771 1.00940 1.00834 0.95740 1.21831 1.00084 0.96008 1.01433 1.21622 0.92744 1.01449 0.97576 0.91693 0.92407 0.91463 0.90185 0.89625 0.75454 0.92788 0.92894 0.91739 0.91767 0.96112 0.96227 0.92491 0.90411 0.91596 0.93027 0.91206 0.91296 0.94074 0.91414 0.94263 0.90493 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.20 71.98 0.66 -0.66 16 2 C -0.11 -1.34 2.52 -10.86 -0.03 -1.37 16 3 H 0.07 1.04 6.33 -2.39 -0.02 1.03 16 4 C 0.11 1.68 5.69 86.22 0.49 2.17 16 5 N -0.62 -13.90 2.42 -837.76 -2.03 -15.92 16 6 C 0.70 21.63 8.30 179.05 1.49 23.12 16 7 O -0.64 -25.29 15.78 -3.97 -0.06 -25.35 16 8 N -0.74 -21.10 5.47 -478.53 -2.62 -23.71 16 9 C 0.15 4.96 5.68 86.38 0.49 5.45 16 10 C -0.10 -3.63 5.27 30.59 0.16 -3.47 16 11 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 12 C -0.53 -30.30 9.66 25.60 0.25 -30.05 16 13 H 0.04 2.39 7.99 -2.91 -0.02 2.36 16 14 C 0.01 0.32 5.47 84.66 0.46 0.78 16 15 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 16 Si 0.95 44.82 27.47 68.60 1.88 46.71 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 19 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 20 C 0.14 2.69 5.10 86.36 0.44 3.13 16 21 C -0.08 -1.10 0.77 -52.10 -0.04 -1.14 16 22 C -0.14 -1.49 8.48 71.98 0.61 -0.88 16 23 C -0.14 -2.46 7.99 71.98 0.58 -1.88 16 24 C -0.10 -1.05 4.00 30.62 0.12 -0.93 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.08 1.19 5.57 -2.39 -0.01 1.18 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.41 9.39 5.93 -92.71 -0.55 8.84 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.02 0.95 7.20 -2.39 -0.02 0.94 16 36 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 37 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.68 7.03 -2.39 -0.02 1.66 16 40 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.04 0.88 5.97 -2.39 -0.01 0.87 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -71.89 360.19 3.59 -68.30 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.32 Total: 15.44 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 5.80 Total: -6.13 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -4.34 Total: -98.96 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.06 Total: -25.35 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.71 kcal Total: -71.89 3.59 -68.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343810021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.264 kcal (2) G-P(sol) polarization free energy of solvation -71.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds