Wall clock time and date at job start Tue Mar 31 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47061 * 2 1 4 4 C 1.52997 * 109.47282 * 240.00167 * 2 1 3 5 5 C 1.53005 * 109.47374 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46681 * 299.99685 * 5 4 2 7 7 C 1.52998 * 109.46785 * 179.97438 * 5 4 2 8 8 C 1.52994 * 109.47019 * 59.99659 * 5 4 2 9 9 C 1.53005 * 109.47441 * 300.00186 * 8 5 4 10 10 C 1.52996 * 109.47074 * 59.99999 * 9 8 5 11 11 H 1.08994 * 109.47099 * 180.02562 * 10 9 8 12 12 N 1.46497 * 109.47149 * 60.00009 * 10 9 8 13 13 C 1.34781 * 120.00103 * 85.00228 * 12 10 9 14 14 O 1.21593 * 119.99684 * 359.97438 * 13 12 10 15 15 N 1.34770 * 120.00528 * 180.02562 * 13 12 10 16 16 C 1.46493 * 120.00393 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47400 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47159 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 16 21 21 N 1.31514 * 119.99985 * 180.27663 * 20 18 17 22 22 Si 1.86800 * 119.99777 * 0.28166 * 20 18 17 23 23 H 1.48498 * 109.47109 * 89.99834 * 22 20 18 24 24 H 1.48507 * 109.46754 * 209.99574 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99405 * 22 20 18 26 26 H 1.09002 * 109.46807 * 299.99975 * 1 2 3 27 27 H 1.08998 * 109.47099 * 60.00004 * 1 2 3 28 28 H 1.08998 * 109.47019 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47193 * 59.99886 * 4 2 1 30 30 H 1.09003 * 109.46936 * 299.99910 * 4 2 1 31 31 H 1.09004 * 109.46776 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47394 * 299.99907 * 6 5 4 33 33 H 1.09002 * 109.47313 * 60.00426 * 6 5 4 34 34 H 1.08995 * 109.47677 * 299.99939 * 7 5 4 35 35 H 1.08998 * 109.47261 * 60.00110 * 7 5 4 36 36 H 1.09006 * 109.46478 * 179.97438 * 7 5 4 37 37 H 1.09004 * 109.46721 * 179.97438 * 8 5 4 38 38 H 1.09003 * 109.47139 * 60.00279 * 8 5 4 39 39 H 1.08998 * 109.46661 * 300.00436 * 9 8 5 40 40 H 1.09002 * 109.46930 * 180.02562 * 9 8 5 41 41 H 0.97000 * 120.00583 * 264.99801 * 12 10 9 42 42 H 0.97000 * 119.99567 * 359.97438 * 15 13 12 43 43 H 1.09004 * 109.46794 * 59.99777 * 16 15 13 44 44 H 1.09000 * 109.47559 * 300.00254 * 16 15 13 45 45 H 1.09004 * 109.47066 * 60.00265 * 17 16 15 46 46 H 1.08994 * 109.47405 * 300.00096 * 17 16 15 47 47 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0805 0.7206 -1.2486 7 6 4.0799 -1.4435 -2.4979 8 6 4.0795 -1.4433 0.0003 9 6 3.5695 -0.7221 1.2496 10 6 2.0395 -0.7215 1.2493 11 1 1.6762 -0.2074 2.1390 12 7 1.5507 -2.1026 1.2490 13 6 1.4215 -2.7720 2.4116 14 8 1.7110 -2.2298 3.4607 15 7 0.9723 -4.0426 2.4113 16 6 0.8323 -4.7704 3.6750 17 6 0.3074 -6.1802 3.3962 18 6 0.1629 -6.9286 4.6963 19 1 0.4193 -6.4468 5.6282 20 6 -0.3027 -8.2265 4.6965 21 7 -0.4340 -8.8777 5.8315 22 14 -0.7469 -9.0596 3.0847 23 1 0.4485 -9.7515 2.5393 24 1 -1.8275 -10.0506 3.3211 25 1 -1.2150 -8.0393 2.1125 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6767 -0.2074 -2.1392 30 1 1.6767 -1.7489 -1.2492 31 1 5.1705 0.7202 -1.2489 32 1 3.7175 1.2346 -2.1386 33 1 3.7172 1.2344 -0.3586 34 1 3.7163 -2.4710 -2.4977 35 1 3.7170 -0.9298 -3.3881 36 1 5.1700 -1.4435 -2.4978 37 1 5.1695 -1.4441 0.0002 38 1 3.7158 -2.4709 0.0001 39 1 3.9331 0.3054 1.2497 40 1 3.9329 -1.2360 2.1396 41 1 1.3200 -2.5353 0.4120 42 1 0.7416 -4.4753 1.5744 43 1 0.1311 -4.2433 4.3221 44 1 1.8029 -4.8344 4.1669 45 1 1.0083 -6.7075 2.7490 46 1 -0.6632 -6.1159 2.9046 47 1 -0.7612 -9.7909 5.8316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343920238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:15 Heat of formation + Delta-G solvation = -67.389243 kcal Electronic energy + Delta-G solvation = -23198.698271 eV Core-core repulsion = 19993.941939 eV Total energy + Delta-G solvation = -3204.756332 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72982 -38.90384 -35.39454 -34.63930 -32.91790 -32.63156 -31.34548 -29.70641 -27.62096 -26.92088 -26.22238 -24.63261 -22.30038 -21.05117 -20.66881 -20.32118 -18.34469 -18.14943 -16.82720 -15.79552 -15.51457 -15.34266 -14.96851 -14.52321 -14.38113 -14.14017 -14.12759 -13.65739 -13.45469 -13.21751 -12.94965 -12.63909 -12.57921 -12.27624 -12.08746 -12.06630 -11.83689 -11.46469 -11.42807 -11.33053 -11.16006 -11.02075 -10.50555 -10.39310 -10.31634 -10.20911 -10.11688 -9.94979 -9.68224 -9.29672 -8.93104 -8.60571 -8.31433 -6.09074 -4.08781 3.07797 3.26370 3.33850 3.35278 3.61052 4.34043 4.39374 4.40562 4.43384 4.61964 4.72439 4.90595 4.99894 5.14583 5.21800 5.23945 5.25153 5.28291 5.37703 5.44073 5.48544 5.58321 5.62528 5.69817 5.70397 5.78730 5.80811 5.91627 5.93229 6.04641 6.07109 6.12659 6.17210 6.21359 6.28929 6.31697 6.61723 6.74479 6.88123 7.11585 7.28129 7.37044 7.70246 8.37496 8.49577 8.95578 9.01160 9.51225 11.04102 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025437 B = 0.003353 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.493388 B = 8347.911982 C = 8617.685679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 H 0.085 0.915 4 C -0.103 4.103 5 C -0.066 4.066 6 C -0.144 4.144 7 C -0.141 4.141 8 C -0.105 4.105 9 C -0.134 4.134 10 C 0.172 3.828 11 H 0.086 0.914 12 N -0.743 5.743 13 C 0.699 3.301 14 O -0.596 6.596 15 N -0.744 5.744 16 C 0.149 3.851 17 C -0.021 4.021 18 C -0.521 4.521 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.883 3.117 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.266 1.266 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.390 0.610 42 H 0.390 0.610 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.016 0.984 46 H 0.021 0.979 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.572 19.027 -19.556 28.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.103 0.897 4 C -0.141 4.141 5 C -0.066 4.066 6 C -0.201 4.201 7 C -0.199 4.199 8 C -0.143 4.143 9 C -0.172 4.172 10 C 0.066 3.934 11 H 0.104 0.896 12 N -0.400 5.400 13 C 0.399 3.601 14 O -0.474 6.474 15 N -0.398 5.398 16 C 0.027 3.973 17 C -0.059 4.059 18 C -0.560 4.560 19 H 0.094 0.906 20 C -0.133 4.133 21 N -0.538 5.538 22 Si 0.710 3.290 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.225 0.775 42 H 0.222 0.778 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.035 0.965 46 H 0.039 0.961 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.773 19.339 -18.456 27.577 hybrid contribution -0.456 -1.084 -1.547 1.943 sum 6.316 18.255 -20.003 27.807 Atomic orbital electron populations 1.21810 0.94723 1.02245 1.01630 1.21477 0.96000 1.00034 0.94386 0.89667 1.21651 0.94504 1.00502 0.97403 1.20553 0.95029 0.95712 0.95288 1.21968 1.00779 0.95611 1.01777 1.21862 1.00921 1.00213 0.96877 1.21543 0.99992 0.99408 0.93365 1.21993 0.95723 1.01024 0.98482 1.20702 0.93059 0.81481 0.98124 0.89636 1.45236 1.72351 1.14794 1.07598 1.16057 0.78495 0.81570 0.83978 1.90894 1.57382 1.68569 1.30576 1.45519 1.70389 1.12472 1.11398 1.21337 1.00844 0.92411 0.82755 1.19790 0.96052 0.91450 0.98624 1.20934 1.44456 0.97930 0.92650 0.90597 1.25004 0.94900 0.97156 0.96261 1.69906 1.46482 1.11734 1.25650 0.86746 0.78439 0.79471 0.84365 1.20258 1.21307 1.19117 0.92481 0.92757 0.92440 0.91753 0.92075 0.92872 0.92965 0.91950 0.92675 0.92839 0.92744 0.92239 0.91821 0.91188 0.91148 0.77496 0.77766 0.92257 0.92275 0.96529 0.96092 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.03 37.16 0.34 -0.86 16 2 C -0.10 -0.79 2.24 -90.62 -0.20 -0.99 16 3 H 0.09 0.61 6.43 -51.93 -0.33 0.28 16 4 C -0.10 -0.73 3.84 -26.73 -0.10 -0.83 16 5 C -0.07 -0.48 0.77 -154.51 -0.12 -0.60 16 6 C -0.14 -0.96 7.78 37.16 0.29 -0.67 16 7 C -0.14 -0.97 8.47 37.16 0.31 -0.65 16 8 C -0.11 -0.95 4.57 -26.73 -0.12 -1.07 16 9 C -0.13 -1.38 5.33 -26.73 -0.14 -1.52 16 10 C 0.17 1.85 2.23 -67.93 -0.15 1.70 16 11 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 12 N -0.74 -8.91 3.54 -58.68 -0.21 -9.11 16 13 C 0.70 11.77 8.53 -86.92 -0.74 11.03 16 14 O -0.60 -12.55 16.01 5.28 0.08 -12.47 16 15 N -0.74 -12.57 5.56 -65.23 -0.36 -12.93 16 16 C 0.15 3.13 5.61 -4.05 -0.02 3.11 16 17 C -0.02 -0.49 4.15 -27.88 -0.12 -0.61 16 18 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 19 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 22 Si 0.88 21.18 27.47 -169.99 -4.67 16.52 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.51 7.44 -51.93 -0.39 0.12 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.44 6.50 -51.93 -0.34 0.11 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.42 4.81 -51.93 -0.25 0.17 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.64 7.60 -51.93 -0.39 0.25 16 39 H 0.07 0.63 6.43 -51.93 -0.33 0.29 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.39 3.82 6.66 -40.82 -0.27 3.55 16 42 H 0.39 5.48 8.49 -40.82 -0.35 5.13 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 45 H 0.02 0.37 7.58 -51.93 -0.39 -0.02 16 46 H 0.02 0.48 7.19 -51.93 -0.37 0.10 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -32.28 355.70 -8.71 -40.99 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.47 Total: 3.64 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.21 Total: -5.18 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.20 Total: -48.86 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.47 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.28 -8.71 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343920238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.400 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds