Wall clock time and date at job start Tue Mar 31 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46833 * 2 1 4 4 C 1.52999 * 109.46930 * 120.00351 * 2 1 3 5 5 C 1.52994 * 109.47061 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47163 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47084 * 59.99944 * 5 4 2 8 8 C 1.52999 * 109.46984 * 299.99869 * 5 4 2 9 9 C 1.52999 * 109.47115 * 60.00164 * 8 5 4 10 10 C 1.52994 * 109.47061 * 299.99789 * 9 8 5 11 11 H 1.09000 * 109.47169 * 180.02562 * 10 9 8 12 12 N 1.46509 * 109.46974 * 300.00276 * 10 9 8 13 13 C 1.34772 * 119.99773 * 274.99502 * 12 10 9 14 14 O 1.21581 * 120.00417 * 0.02562 * 13 12 10 15 15 N 1.34779 * 119.99724 * 180.02562 * 13 12 10 16 16 C 1.46499 * 119.99872 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.47232 * 179.97438 * 16 15 13 18 18 C 1.50695 * 109.47088 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00496 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99572 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99951 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 59.99744 * 22 20 18 24 24 H 1.48503 * 109.47261 * 299.99924 * 22 20 18 25 25 H 1.48500 * 109.47454 * 179.97438 * 22 20 18 26 26 H 1.09004 * 109.46814 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47431 * 300.00004 * 1 2 3 28 28 H 1.09000 * 109.47038 * 60.00363 * 1 2 3 29 29 H 1.08997 * 109.47621 * 59.99609 * 4 2 1 30 30 H 1.09005 * 109.46666 * 299.99648 * 4 2 1 31 31 H 1.09006 * 109.47019 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47537 * 300.00162 * 6 5 4 33 33 H 1.08995 * 109.47286 * 60.00201 * 6 5 4 34 34 H 1.08999 * 109.47090 * 299.99839 * 7 5 4 35 35 H 1.08992 * 109.47581 * 60.00008 * 7 5 4 36 36 H 1.09006 * 109.47254 * 180.02562 * 7 5 4 37 37 H 1.08995 * 109.47068 * 299.99556 * 8 5 4 38 38 H 1.09006 * 109.46958 * 179.97438 * 8 5 4 39 39 H 1.08999 * 109.46773 * 179.97438 * 9 8 5 40 40 H 1.08994 * 109.47130 * 60.00308 * 9 8 5 41 41 H 0.96997 * 119.99671 * 95.00566 * 12 10 9 42 42 H 0.97000 * 120.00296 * 359.97438 * 15 13 12 43 43 H 1.09002 * 109.47391 * 59.99686 * 16 15 13 44 44 H 1.09001 * 109.47271 * 299.99467 * 16 15 13 45 45 H 1.09002 * 109.46935 * 59.99717 * 17 16 15 46 46 H 1.08998 * 109.47061 * 300.00511 * 17 16 15 47 47 H 0.97006 * 119.99995 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5699 -0.7208 1.2496 6 6 4.0799 -1.4416 2.4991 7 6 4.0794 0.7219 1.2500 8 6 4.0804 -1.4416 0.0003 9 6 3.5705 -0.7203 -1.2489 10 6 2.0405 -0.7208 -1.2493 11 1 1.6772 -0.2073 -2.1394 12 7 1.5527 -2.1023 -1.2496 13 6 1.4244 -2.7713 -2.4125 14 8 1.7140 -2.2287 -3.4612 15 7 0.9752 -4.0420 -2.4128 16 6 0.8362 -4.7695 -3.6768 17 6 0.3122 -6.1798 -3.3987 18 6 0.1687 -6.9279 -4.6990 19 1 0.4260 -6.4459 -5.6306 20 6 -0.2910 -8.2278 -4.6993 21 7 -0.6047 -8.8146 -3.5650 22 14 -0.4682 -9.1554 -6.3110 23 1 0.8547 -9.2425 -6.9801 24 1 -1.4227 -8.4371 -7.1932 25 1 -0.9769 -10.5242 -6.0411 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6766 -1.7490 1.2492 30 1 1.6766 -0.2074 2.1392 31 1 5.1700 -1.4408 2.4995 32 1 3.7162 -0.9277 3.3889 33 1 3.7170 -2.4693 2.4993 34 1 3.7161 1.2358 0.3600 35 1 3.7158 1.2355 2.1399 36 1 5.1695 0.7223 1.2498 37 1 3.7175 -2.4694 0.0001 38 1 5.1705 -1.4408 0.0003 39 1 3.9346 -1.2336 -2.1389 40 1 3.9335 0.3074 -1.2486 41 1 1.3219 -2.5353 -0.4129 42 1 0.7445 -4.4752 -1.5761 43 1 1.8073 -4.8333 -4.1680 44 1 0.1355 -4.2423 -4.3243 45 1 -0.6587 -6.1163 -2.9074 46 1 1.0131 -6.7068 -2.7513 47 1 -0.5123 -8.3331 -2.7280 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343920239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:18 Heat of formation + Delta-G solvation = -75.345010 kcal Electronic energy + Delta-G solvation = -23170.002000 eV Core-core repulsion = 19964.900680 eV Total energy + Delta-G solvation = -3205.101320 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.72106 -38.89451 -35.40329 -34.68492 -33.10086 -32.70231 -31.27071 -29.02886 -27.60674 -26.90933 -26.11626 -24.18545 -22.33431 -21.47849 -20.74997 -20.32375 -18.36940 -18.24438 -16.58719 -15.87527 -15.52372 -15.31636 -14.97860 -14.59319 -14.34312 -14.12389 -13.74916 -13.67936 -13.57198 -13.16439 -12.93181 -12.62793 -12.26874 -12.17139 -12.07441 -12.05651 -11.82792 -11.60053 -11.40925 -11.32066 -11.00846 -10.94336 -10.49498 -10.42349 -10.31491 -10.16526 -10.11692 -9.94127 -9.78496 -8.92768 -8.67853 -8.42549 -8.26741 -6.42410 -4.11894 3.08985 3.44537 3.46069 3.61590 3.64680 4.35034 4.41355 4.44294 4.50727 4.65543 4.74360 4.91472 5.00849 5.15439 5.22577 5.25969 5.29177 5.35910 5.38799 5.45119 5.49480 5.59414 5.63571 5.70756 5.71448 5.79684 5.81847 5.92252 5.94015 6.05716 6.09236 6.13568 6.21532 6.22401 6.30295 6.32438 6.65818 6.75486 6.93773 7.18149 7.39123 7.41430 8.10879 8.40219 8.42537 8.81883 9.01628 9.59907 10.98737 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029531 B = 0.003079 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.934585 B = 9091.354711 C = 9262.507380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 H 0.085 0.915 4 C -0.103 4.103 5 C -0.066 4.066 6 C -0.141 4.141 7 C -0.144 4.144 8 C -0.106 4.106 9 C -0.133 4.133 10 C 0.172 3.828 11 H 0.085 0.915 12 N -0.742 5.742 13 C 0.699 3.301 14 O -0.598 6.598 15 N -0.743 5.743 16 C 0.149 3.851 17 C 0.000 4.000 18 C -0.601 4.601 19 H 0.053 0.947 20 C 0.017 3.983 21 N -0.911 5.911 22 Si 1.071 2.929 23 H -0.287 1.287 24 H -0.287 1.287 25 H -0.282 1.282 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.391 0.609 42 H 0.390 0.610 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.012 0.988 46 H 0.012 0.988 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.098 19.096 14.016 24.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.103 0.897 4 C -0.141 4.141 5 C -0.066 4.066 6 C -0.199 4.199 7 C -0.201 4.201 8 C -0.143 4.143 9 C -0.172 4.172 10 C 0.066 3.934 11 H 0.103 0.897 12 N -0.399 5.399 13 C 0.399 3.601 14 O -0.477 6.477 15 N -0.396 5.396 16 C 0.026 3.974 17 C -0.037 4.037 18 C -0.640 4.640 19 H 0.071 0.929 20 C -0.187 4.187 21 N -0.547 5.547 22 Si 0.899 3.101 23 H -0.213 1.213 24 H -0.213 1.213 25 H -0.207 1.207 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.225 0.775 42 H 0.223 0.777 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.031 0.969 46 H 0.031 0.969 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.902 18.126 12.351 22.994 hybrid contribution 0.283 1.038 1.497 1.844 sum 7.185 19.164 13.848 24.711 Atomic orbital electron populations 1.21811 0.94718 1.02262 1.01621 1.21475 0.96001 1.00021 0.94383 0.89668 1.21649 0.94499 1.00526 0.97387 1.20552 0.95035 0.95707 0.95284 1.21863 1.00913 1.00247 0.96855 1.21967 1.00773 0.95612 1.01769 1.21542 0.99977 0.99428 0.93363 1.21990 0.95728 1.01007 0.98482 1.20709 0.93073 0.81489 0.98127 0.89679 1.45235 1.72352 1.14751 1.07605 1.16069 0.78476 0.81594 0.83973 1.90878 1.57549 1.68606 1.30647 1.45537 1.70237 1.12398 1.11441 1.21390 1.00385 0.92897 0.82758 1.19446 0.95590 0.90219 0.98456 1.21893 1.48893 1.00475 0.92729 0.92863 1.25884 0.93439 0.95370 1.04012 1.70803 1.45241 1.40086 0.98560 0.83510 0.76623 0.76071 0.73909 1.21314 1.21312 1.20750 0.92436 0.92721 0.92512 0.92053 0.91730 0.92744 0.92818 0.92653 0.91982 0.92944 0.92874 0.91818 0.92238 0.91209 0.91182 0.77462 0.77696 0.92725 0.92709 0.96940 0.96943 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.04 37.16 0.34 -0.92 16 2 C -0.10 -0.83 2.24 -90.62 -0.20 -1.03 16 3 H 0.09 0.64 6.43 -51.93 -0.33 0.31 16 4 C -0.10 -0.77 3.84 -26.73 -0.10 -0.88 16 5 C -0.07 -0.50 0.77 -154.51 -0.12 -0.62 16 6 C -0.14 -1.02 8.47 37.16 0.31 -0.71 16 7 C -0.14 -0.99 7.78 37.16 0.29 -0.71 16 8 C -0.11 -1.00 4.57 -26.73 -0.12 -1.12 16 9 C -0.13 -1.43 5.33 -26.73 -0.14 -1.57 16 10 C 0.17 1.92 2.23 -67.93 -0.15 1.77 16 11 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 12 N -0.74 -9.38 3.54 -58.68 -0.21 -9.59 16 13 C 0.70 12.30 8.53 -86.92 -0.74 11.56 16 14 O -0.60 -12.94 16.00 5.29 0.08 -12.86 16 15 N -0.74 -13.35 5.56 -65.22 -0.36 -13.72 16 16 C 0.15 3.29 5.61 -4.04 -0.02 3.27 16 17 C 0.00 0.01 4.40 -27.88 -0.12 -0.11 16 18 C -0.60 -17.16 9.11 -34.44 -0.31 -17.47 16 19 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 21 N -0.91 -27.57 13.65 55.43 0.76 -26.82 16 22 Si 1.07 25.30 29.90 -169.99 -5.08 20.22 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.48 6.51 -51.93 -0.34 0.14 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.43 4.81 -51.93 -0.25 0.18 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.68 7.60 -51.93 -0.39 0.28 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.65 6.43 -51.93 -0.33 0.31 16 41 H 0.39 4.11 6.67 -40.82 -0.27 3.84 16 42 H 0.39 6.03 8.49 -40.82 -0.35 5.68 16 43 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 46 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 47 H 0.27 7.99 7.22 -40.82 -0.29 7.69 16 LS Contribution 358.00 15.07 5.39 5.39 Total: -1.00 -32.42 358.00 -9.07 -41.48 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -8.45 Total: 4.03 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -1.20 Total: -8.15 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.19 Total: -50.12 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.42 -9.07 -41.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343920239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.863 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds