Wall clock time and date at job start Tue Mar 31 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47240 * 2 1 4 4 C 1.53006 * 109.47008 * 119.99323 * 2 1 3 5 5 C 1.52996 * 109.47008 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46900 * 60.00499 * 5 4 2 7 7 C 1.53006 * 109.47008 * 179.97438 * 5 4 2 8 8 C 1.52991 * 109.47547 * 300.00184 * 5 4 2 9 9 C 1.53006 * 109.47117 * 59.99883 * 8 5 4 10 10 C 1.52991 * 109.47547 * 239.99507 * 2 1 3 11 11 H 1.08999 * 109.47253 * 300.00485 * 10 2 1 12 12 N 1.46506 * 109.47120 * 59.99685 * 10 2 1 13 13 C 1.34777 * 120.00271 * 204.99819 * 12 10 2 14 14 O 1.21584 * 119.99563 * 0.02562 * 13 12 10 15 15 N 1.34774 * 119.99906 * 180.02562 * 13 12 10 16 16 C 1.46499 * 119.99966 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.47267 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47257 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99988 * 359.97438 * 18 17 16 20 20 C 1.37885 * 120.00047 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99792 * 359.72305 * 20 18 17 22 22 Si 1.86795 * 120.00009 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47163 * 59.99902 * 22 20 18 24 24 H 1.48495 * 109.47159 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47290 * 299.99897 * 22 20 18 26 26 H 1.09002 * 109.46992 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47767 * 300.00316 * 1 2 3 28 28 H 1.09002 * 109.46952 * 60.00373 * 1 2 3 29 29 H 1.09003 * 109.46985 * 300.00508 * 4 2 1 30 30 H 1.09002 * 109.47065 * 60.00263 * 4 2 1 31 31 H 1.09002 * 109.47432 * 60.00144 * 6 5 4 32 32 H 1.09006 * 109.47287 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.47159 * 299.99678 * 6 5 4 34 34 H 1.08999 * 109.46567 * 60.00265 * 7 5 4 35 35 H 1.08994 * 109.46869 * 179.97438 * 7 5 4 36 36 H 1.09003 * 109.46985 * 300.00508 * 7 5 4 37 37 H 1.08994 * 109.47639 * 179.97438 * 8 5 4 38 38 H 1.08999 * 109.47253 * 300.00485 * 8 5 4 39 39 H 1.08994 * 109.47152 * 179.97438 * 9 8 5 40 40 H 1.08999 * 109.46567 * 60.00182 * 9 8 5 41 41 H 0.96999 * 119.99685 * 25.00835 * 12 10 2 42 42 H 0.96999 * 120.00050 * 0.02562 * 15 13 12 43 43 H 1.09004 * 109.47024 * 59.99687 * 16 15 13 44 44 H 1.09005 * 109.47136 * 300.00071 * 16 15 13 45 45 H 1.09004 * 109.47330 * 59.99904 * 17 16 15 46 46 H 1.08997 * 109.47279 * 300.00390 * 17 16 15 47 47 H 0.97000 * 119.99468 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7217 1.2491 6 6 4.0804 0.7206 1.2487 7 6 4.0799 -1.4423 2.4988 8 6 4.0795 -1.4434 0.0000 9 6 3.5695 -0.7222 -1.2494 10 6 2.0400 -0.7213 -1.2491 11 1 1.6767 -1.7489 -1.2491 12 7 1.5517 -0.0308 -2.4454 13 6 1.4231 -0.7032 -3.6063 14 8 1.7119 -1.8830 -3.6606 15 7 0.9743 -0.0679 -4.7069 16 6 0.8340 -0.7989 -5.9687 17 6 0.3097 0.1472 -7.0507 18 6 0.1659 -0.6046 -8.3488 19 1 0.4232 -1.6524 -8.3973 20 6 -0.2931 0.0454 -9.4748 21 7 -0.6106 1.3203 -9.4146 22 14 -0.4720 -0.8867 -11.0837 23 1 -1.4280 -2.0085 -10.9022 24 1 -0.9807 0.0316 -12.1339 25 1 0.8501 -1.4245 -11.4939 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6765 -0.2072 2.1393 30 1 1.6766 -1.7488 1.2495 31 1 3.7174 1.2348 2.1387 32 1 5.1704 0.7203 1.2489 33 1 3.7171 1.2344 0.3587 34 1 3.7162 -2.4698 2.4995 35 1 5.1698 -1.4431 2.4983 36 1 3.7168 -0.9277 3.3885 37 1 5.1694 -1.4434 -0.0005 38 1 3.7157 -2.4709 0.0002 39 1 3.9329 -1.2361 -2.1393 40 1 3.9332 0.3053 -1.2496 41 1 1.3210 0.9103 -2.4019 42 1 0.7442 0.8734 -4.6636 43 1 0.1323 -1.6223 -5.8354 44 1 1.8044 -1.1936 -6.2698 45 1 1.0110 0.9709 -7.1841 46 1 -0.6607 0.5416 -6.7494 47 1 -0.9332 1.7776 -10.2069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343920243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:21 Heat of formation + Delta-G solvation = -75.081445 kcal Electronic energy + Delta-G solvation = -22778.007133 eV Core-core repulsion = 19572.917242 eV Total energy + Delta-G solvation = -3205.089891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.46315 -38.96068 -35.45109 -34.56502 -32.92151 -32.64236 -31.31165 -29.29615 -27.61228 -26.83178 -25.92673 -24.39361 -22.32945 -21.07836 -20.61334 -20.40488 -18.84934 -17.70898 -16.45305 -16.13589 -15.24216 -15.17318 -15.03113 -14.51917 -14.30754 -14.21557 -13.99772 -13.58154 -13.17110 -13.04019 -12.75715 -12.62373 -12.50106 -12.23664 -12.07308 -12.00881 -11.91906 -11.37068 -11.17119 -11.16193 -10.98962 -10.96020 -10.62878 -10.47917 -10.45019 -10.26032 -10.15489 -9.84098 -9.50734 -9.24076 -8.87950 -8.45088 -8.18805 -6.07018 -4.09500 3.12085 3.33018 3.36582 3.40573 3.67340 4.37088 4.40624 4.42086 4.51255 4.70202 4.79300 4.93718 5.02255 5.18995 5.26410 5.28247 5.29981 5.33461 5.40932 5.49546 5.51635 5.58573 5.66079 5.70053 5.74765 5.81775 5.84516 5.95960 5.98657 6.06164 6.08758 6.16277 6.23006 6.35347 6.39821 6.44021 6.76406 6.82683 7.06665 7.32841 7.60528 7.66586 7.92467 8.29350 8.51637 8.95686 9.08605 9.55006 11.04668 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040827 B = 0.002730 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.660536 B =10253.680202 C =10463.914619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 H 0.076 0.924 4 C -0.098 4.098 5 C -0.068 4.068 6 C -0.144 4.144 7 C -0.141 4.141 8 C -0.105 4.105 9 C -0.132 4.132 10 C 0.172 3.828 11 H 0.085 0.915 12 N -0.748 5.748 13 C 0.699 3.301 14 O -0.599 6.599 15 N -0.740 5.740 16 C 0.141 3.859 17 C 0.013 3.987 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.391 0.609 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.022 0.978 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.929 0.494 24.698 25.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.095 0.905 4 C -0.136 4.136 5 C -0.068 4.068 6 C -0.202 4.202 7 C -0.198 4.198 8 C -0.143 4.143 9 C -0.171 4.171 10 C 0.067 3.933 11 H 0.103 0.897 12 N -0.403 5.403 13 C 0.398 3.602 14 O -0.478 6.478 15 N -0.394 5.394 16 C 0.018 3.982 17 C -0.024 4.024 18 C -0.559 4.559 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.225 0.775 42 H 0.225 0.775 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.108 -0.479 24.489 25.504 hybrid contribution -0.333 0.531 -0.946 1.134 sum 6.774 0.051 23.543 24.499 Atomic orbital electron populations 1.21816 0.94716 1.02212 1.01663 1.21442 0.95992 1.00117 0.94295 0.90533 1.21602 0.94298 1.00840 0.96887 1.20579 0.95189 0.95747 0.95247 1.21975 1.00761 0.95592 1.01828 1.21858 1.00885 1.00206 0.96877 1.21551 1.00233 0.99255 0.93237 1.21991 0.95750 1.01069 0.98318 1.20729 0.93000 0.97138 0.82478 0.89705 1.45219 1.72584 1.13388 1.09156 1.16079 0.78513 0.85200 0.80359 1.90876 1.57618 1.14539 1.84720 1.45538 1.69990 1.13846 1.09992 1.21559 1.00281 0.95549 0.80809 1.19313 0.96530 0.94613 0.91948 1.21027 1.44299 0.96619 0.94002 0.92286 1.24998 0.95207 0.94928 0.99180 1.69951 1.44537 1.09268 1.29659 0.86568 0.78608 0.79590 0.82742 1.20109 1.21273 1.20107 0.92583 0.92765 0.92314 0.91641 0.91647 0.92940 0.92877 0.91948 0.92662 0.92731 0.92797 0.91904 0.91750 0.91216 0.91748 0.77524 0.77508 0.92893 0.92891 0.96033 0.96012 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.04 37.16 0.34 -0.94 16 2 C -0.10 -0.85 2.02 -90.62 -0.18 -1.03 16 3 H 0.08 0.60 6.43 -51.93 -0.33 0.27 16 4 C -0.10 -0.75 4.01 -26.73 -0.11 -0.86 16 5 C -0.07 -0.51 0.77 -154.51 -0.12 -0.63 16 6 C -0.14 -1.02 7.78 37.16 0.29 -0.73 16 7 C -0.14 -0.94 8.47 37.16 0.31 -0.62 16 8 C -0.10 -0.95 4.73 -26.73 -0.13 -1.08 16 9 C -0.13 -1.46 5.22 -26.76 -0.14 -1.60 16 10 C 0.17 1.97 1.90 -67.96 -0.13 1.84 16 11 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 12 N -0.75 -9.59 4.39 -58.71 -0.26 -9.85 16 13 C 0.70 12.39 8.53 -86.92 -0.74 11.65 16 14 O -0.60 -13.04 16.01 5.29 0.08 -12.95 16 15 N -0.74 -13.35 5.56 -65.23 -0.36 -13.72 16 16 C 0.14 3.09 5.61 -4.05 -0.02 3.07 16 17 C 0.01 0.34 5.09 -27.89 -0.14 0.20 16 18 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 22 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.47 4.81 -51.93 -0.25 0.22 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.66 6.43 -51.93 -0.33 0.32 16 41 H 0.39 4.01 8.40 -40.82 -0.34 3.67 16 42 H 0.39 6.09 8.49 -40.82 -0.35 5.74 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -31.71 363.73 -9.21 -40.93 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -8.69 Total: 3.29 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.18 Total: -4.12 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.12 Total: -49.19 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.71 -9.21 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343920243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.155 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds