Wall clock time and date at job start Tue Mar 31 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 H 1.08999 * 109.46705 * 2 1 4 4 C 1.52992 * 109.47279 * 239.99697 * 2 1 3 5 5 C 1.52999 * 109.46921 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47283 * 299.99812 * 5 4 2 7 7 C 1.53005 * 109.47303 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.47179 * 60.00100 * 5 4 2 9 9 C 1.53005 * 109.46840 * 300.00084 * 8 5 4 10 10 C 1.52999 * 109.47303 * 59.99992 * 9 8 5 11 11 H 1.08999 * 109.46965 * 59.99658 * 10 9 8 12 12 N 1.46499 * 109.47136 * 180.02562 * 10 9 8 13 13 C 1.34777 * 119.99665 * 275.27771 * 12 10 9 14 14 O 1.21583 * 120.00270 * 359.72083 * 13 12 10 15 15 N 1.34775 * 119.99585 * 179.72218 * 13 12 10 16 16 C 1.46507 * 119.99876 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.46968 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.46878 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99766 * 359.97438 * 18 17 16 20 20 C 1.37869 * 119.99946 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00110 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46837 * 90.00026 * 22 20 18 24 24 H 1.48495 * 109.47331 * 209.99910 * 22 20 18 25 25 H 1.48497 * 109.46899 * 330.00049 * 22 20 18 26 26 H 1.08991 * 109.47189 * 300.00068 * 1 2 3 27 27 H 1.08997 * 109.46640 * 60.00826 * 1 2 3 28 28 H 1.08999 * 109.46705 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47246 * 59.99826 * 4 2 1 30 30 H 1.08999 * 109.47499 * 299.99816 * 4 2 1 31 31 H 1.08997 * 109.47096 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.47149 * 300.00564 * 6 5 4 33 33 H 1.09005 * 109.46687 * 59.99867 * 6 5 4 34 34 H 1.09006 * 109.46786 * 300.00368 * 7 5 4 35 35 H 1.08999 * 109.46630 * 59.99742 * 7 5 4 36 36 H 1.08997 * 109.47221 * 180.02562 * 7 5 4 37 37 H 1.09000 * 109.46999 * 179.97438 * 8 5 4 38 38 H 1.08999 * 109.47056 * 60.00198 * 8 5 4 39 39 H 1.09006 * 109.46786 * 299.99624 * 9 8 5 40 40 H 1.08999 * 109.46630 * 180.02562 * 9 8 5 41 41 H 0.97001 * 119.99790 * 94.99484 * 12 10 9 42 42 H 0.97000 * 120.00523 * 0.02562 * 15 13 12 43 43 H 1.08998 * 109.47039 * 300.00042 * 16 15 13 44 44 H 1.08994 * 109.46660 * 60.00264 * 16 15 13 45 45 H 1.08998 * 109.46943 * 299.99694 * 17 16 15 46 46 H 1.08994 * 109.47116 * 60.00083 * 17 16 15 47 47 H 0.97004 * 120.00285 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2494 6 6 4.0796 0.7220 -1.2498 7 6 4.0803 -1.4425 -2.4982 8 6 4.0806 -1.4415 -0.0001 9 6 3.5705 -0.7201 1.2491 10 6 2.0405 -0.7208 1.2494 11 1 1.6776 -1.7486 1.2496 12 7 1.5521 -0.0295 2.4451 13 6 1.4291 -0.6999 3.6079 14 8 1.7187 -1.8794 3.6633 15 7 0.9851 -0.0626 4.7093 16 6 0.8509 -0.7913 5.9732 17 6 0.3311 0.1567 7.0558 18 6 0.1937 -0.5927 8.3560 19 1 0.4510 -1.6405 8.4051 20 6 -0.2604 0.0592 9.4828 21 7 -0.5732 1.3352 9.4231 22 14 -0.4314 -0.8700 11.0943 23 1 0.8399 -0.7777 11.8561 24 1 -1.5321 -0.2752 11.8942 25 1 -0.7380 -2.2955 10.8136 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.6768 -0.2075 -2.1392 30 1 1.6769 -1.7490 -1.2491 31 1 5.1696 0.7224 -1.2495 32 1 3.7159 1.2356 -2.1398 33 1 3.7161 1.2359 -0.3598 34 1 3.7173 -2.4704 -2.4975 35 1 3.7165 -0.9294 -3.3885 36 1 5.1703 -1.4425 -2.4982 37 1 5.1706 -1.4414 -0.0005 38 1 3.7177 -2.4693 0.0002 39 1 3.9335 0.3077 1.2488 40 1 3.9346 -1.2334 2.1391 41 1 1.3211 0.9115 2.4010 42 1 0.7537 0.8784 4.6652 43 1 0.1490 -1.6153 5.8448 44 1 1.8229 -1.1849 6.2705 45 1 1.0327 0.9809 7.1844 46 1 -0.6409 0.5500 6.7582 47 1 -0.8930 1.7938 10.2158 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343920245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:24 Heat of formation + Delta-G solvation = -75.118918 kcal Electronic energy + Delta-G solvation = -22778.115041 eV Core-core repulsion = 19573.023526 eV Total energy + Delta-G solvation = -3205.091516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46163 -38.96025 -35.45046 -34.56521 -32.92248 -32.64234 -31.30862 -29.29634 -27.61482 -26.83230 -25.92519 -24.39507 -22.33026 -21.07954 -20.61348 -20.40441 -18.84950 -17.70952 -16.45383 -16.13775 -15.24237 -15.17258 -15.03166 -14.51530 -14.30746 -14.21489 -13.99738 -13.58069 -13.17158 -13.04024 -12.75744 -12.62521 -12.50115 -12.24276 -12.07441 -12.00910 -11.91908 -11.37058 -11.17122 -11.15676 -11.00738 -10.96029 -10.61114 -10.48010 -10.45129 -10.26746 -10.15416 -9.83778 -9.51023 -9.22886 -8.87913 -8.45581 -8.18890 -6.07230 -4.09685 3.12119 3.31101 3.37151 3.42006 3.67322 4.37040 4.40582 4.42058 4.51280 4.70163 4.79270 4.93696 5.02238 5.18923 5.26366 5.28278 5.29898 5.33459 5.40956 5.49490 5.51591 5.58566 5.66046 5.70032 5.74745 5.81770 5.84480 5.95974 5.98650 6.06175 6.08741 6.16271 6.22976 6.35317 6.39796 6.44037 6.76375 6.82650 7.06613 7.32826 7.60600 7.66498 7.92363 8.29225 8.51608 8.95766 9.08589 9.54980 11.04484 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040757 B = 0.002731 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.840079 B =10251.715236 C =10461.684653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 H 0.076 0.924 4 C -0.098 4.098 5 C -0.068 4.068 6 C -0.144 4.144 7 C -0.141 4.141 8 C -0.105 4.105 9 C -0.133 4.133 10 C 0.172 3.828 11 H 0.085 0.915 12 N -0.748 5.748 13 C 0.699 3.301 14 O -0.599 6.599 15 N -0.740 5.740 16 C 0.141 3.859 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.392 0.608 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.022 0.978 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.836 0.445 -24.737 25.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.095 0.905 4 C -0.136 4.136 5 C -0.068 4.068 6 C -0.202 4.202 7 C -0.198 4.198 8 C -0.143 4.143 9 C -0.171 4.171 10 C 0.067 3.933 11 H 0.103 0.897 12 N -0.403 5.403 13 C 0.399 3.601 14 O -0.477 6.477 15 N -0.394 5.394 16 C 0.018 3.982 17 C -0.024 4.024 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.225 0.775 42 H 0.225 0.775 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.017 -0.532 -24.528 25.518 hybrid contribution -0.324 0.547 0.952 1.145 sum 6.692 0.015 -23.576 24.507 Atomic orbital electron populations 1.21817 0.94714 1.02212 1.01661 1.21444 0.95991 1.00118 0.94294 0.90536 1.21599 0.94297 1.00840 0.96888 1.20582 0.95190 0.95744 0.95249 1.21973 1.00764 0.95585 1.01829 1.21858 1.00884 1.00200 0.96885 1.21554 1.00229 0.99257 0.93241 1.22003 0.95752 1.01065 0.98319 1.20739 0.92983 0.97130 0.82487 0.89698 1.45218 1.72613 1.13464 1.09049 1.16079 0.78514 0.85201 0.80356 1.90876 1.57547 1.14551 1.84775 1.45541 1.70127 1.13880 1.09824 1.21561 1.00306 0.95586 0.80744 1.19320 0.96559 0.94608 0.91957 1.21062 1.44284 0.96665 0.93845 0.92234 1.24995 0.95221 0.94924 0.99189 1.69958 1.44781 1.09148 1.29529 0.86513 0.77751 0.80071 0.83233 1.20569 1.21192 1.19718 0.92316 0.92762 0.92584 0.91646 0.91641 0.92874 0.92934 0.91952 0.92660 0.92801 0.92731 0.91907 0.91755 0.91746 0.91218 0.77521 0.77508 0.92891 0.92888 0.96020 0.96009 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.04 37.16 0.34 -0.94 16 2 C -0.10 -0.85 2.02 -90.62 -0.18 -1.03 16 3 H 0.08 0.60 6.43 -51.93 -0.33 0.27 16 4 C -0.10 -0.75 4.01 -26.74 -0.11 -0.86 16 5 C -0.07 -0.51 0.77 -154.50 -0.12 -0.63 16 6 C -0.14 -1.02 7.78 37.16 0.29 -0.73 16 7 C -0.14 -0.94 8.47 37.16 0.31 -0.62 16 8 C -0.10 -0.95 4.73 -26.73 -0.13 -1.08 16 9 C -0.13 -1.46 5.22 -26.73 -0.14 -1.60 16 10 C 0.17 1.97 1.90 -67.93 -0.13 1.84 16 11 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 12 N -0.75 -9.59 4.39 -58.68 -0.26 -9.85 16 13 C 0.70 12.39 8.53 -86.92 -0.74 11.65 16 14 O -0.60 -13.03 16.01 5.29 0.08 -12.95 16 15 N -0.74 -13.35 5.56 -65.22 -0.36 -13.71 16 16 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 22 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.06 0.55 7.44 -51.93 -0.39 0.16 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.47 4.81 -51.93 -0.25 0.22 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.66 6.43 -51.93 -0.33 0.32 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.39 4.01 8.40 -40.82 -0.34 3.67 16 42 H 0.39 6.09 8.49 -40.82 -0.35 5.74 16 43 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 363.74 15.07 5.48 5.48 Total: -1.00 -31.74 363.74 -9.21 -40.95 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -8.69 Total: 3.25 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -1.18 Total: -4.10 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.12 Total: -49.18 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.74 -9.21 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343920245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.171 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds