Wall clock time and date at job start Tue Mar 31 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.52626 * 2 1 4 4 C 1.53045 * 109.49852 * 239.91557 * 2 1 3 5 5 C 1.53042 * 109.53762 * 178.68427 * 4 2 1 6 6 C 1.53193 * 109.31172 * 61.36814 * 5 4 2 7 7 N 1.46935 * 108.77525 * 305.36234 * 6 5 4 8 8 C 1.34771 * 120.62828 * 233.58645 * 7 6 5 9 9 O 1.21587 * 120.00439 * 5.22178 * 8 7 6 10 10 N 1.34783 * 119.99713 * 185.22505 * 8 7 6 11 11 C 1.46497 * 119.99982 * 175.01442 * 10 8 7 12 12 C 1.53002 * 109.46925 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47190 * 60.00263 * 12 11 10 14 14 C 1.52997 * 109.46919 * 299.99692 * 12 11 10 15 15 C 1.53007 * 109.46932 * 180.02562 * 12 11 10 16 16 C 1.50699 * 109.46847 * 180.02562 * 15 12 11 17 17 H 1.07995 * 120.00086 * 359.97438 * 16 15 12 18 18 C 1.37875 * 119.99683 * 180.02562 * 16 15 12 19 19 N 1.31517 * 119.99963 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00162 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46636 * 60.00022 * 20 18 16 22 22 H 1.48497 * 109.47231 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47220 * 300.00040 * 20 18 16 24 24 C 1.46928 * 118.73469 * 53.86249 * 7 6 5 25 25 H 1.08992 * 109.47484 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46972 * 300.08168 * 1 2 3 27 27 H 1.09004 * 109.46977 * 60.07766 * 1 2 3 28 28 H 1.08999 * 109.45225 * 58.66806 * 4 2 1 29 29 H 1.08995 * 109.44538 * 298.70282 * 4 2 1 30 30 H 1.08999 * 109.49651 * 301.41826 * 5 4 2 31 31 H 1.08998 * 109.49733 * 181.32038 * 5 4 2 32 32 H 1.08995 * 109.58963 * 185.57740 * 6 5 4 33 33 H 1.08996 * 109.70595 * 65.21909 * 6 5 4 34 34 H 0.97002 * 119.99692 * 355.01263 * 10 8 7 35 35 H 1.09000 * 109.47131 * 59.99879 * 11 10 8 36 36 H 1.09001 * 109.47268 * 299.99613 * 11 10 8 37 37 H 1.09002 * 109.47189 * 299.99866 * 13 12 11 38 38 H 1.09006 * 109.47384 * 179.97438 * 13 12 11 39 39 H 1.08998 * 109.47599 * 59.99481 * 13 12 11 40 40 H 1.09006 * 109.46706 * 179.97438 * 14 12 11 41 41 H 1.09000 * 109.47559 * 300.00150 * 14 12 11 42 42 H 1.09002 * 109.46833 * 60.00518 * 14 12 11 43 43 H 1.08998 * 109.46682 * 299.99800 * 15 12 11 44 44 H 1.09000 * 109.47214 * 60.00053 * 15 12 11 45 45 H 0.97007 * 119.99994 * 179.97438 * 19 18 16 46 46 H 1.08995 * 109.58869 * 65.92397 * 24 7 6 47 47 H 1.09001 * 109.58305 * 186.35188 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7232 -1.2483 5 6 3.5709 -0.6951 -1.2659 6 6 4.1053 -1.4268 -0.0307 7 7 3.5046 -0.8291 1.1697 8 6 4.2811 -0.3865 2.1784 9 8 5.4913 -0.3920 2.0615 10 7 3.7161 0.0624 3.3168 11 6 4.5593 0.4408 4.4533 12 6 3.6752 0.9126 5.6095 13 6 2.7345 -0.2194 6.0270 14 6 2.8513 2.1213 5.1610 15 6 4.5560 1.3084 6.7964 16 6 3.6851 1.7726 7.9353 17 1 2.6110 1.7845 7.8237 18 6 4.2598 2.1830 9.1195 19 7 5.5678 2.1690 9.2552 20 14 3.1804 2.7591 10.5311 21 1 2.2681 1.6599 10.9371 22 1 4.0352 3.1431 11.6830 23 1 2.3798 3.9315 10.0956 24 6 2.0410 -0.7289 1.2520 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5151 0.8893 27 1 -0.3633 0.5126 -0.8907 28 1 1.6582 -0.2245 -2.1388 29 1 1.6967 -1.7573 -1.2350 30 1 3.9159 0.3388 -1.2540 31 1 3.9335 -1.1898 -2.1670 32 1 5.1895 -1.3247 0.0139 33 1 3.8396 -2.4825 -0.0853 34 1 2.7510 0.1348 3.3834 35 1 5.2293 1.2475 4.1560 36 1 5.1466 -0.4202 4.7726 37 1 2.1071 -0.5010 5.1813 38 1 2.1049 0.1166 6.8510 39 1 3.3214 -1.0805 6.3465 40 1 2.2211 2.4572 5.9846 41 1 3.5216 2.9278 4.8636 42 1 2.2239 1.8397 4.3153 43 1 5.1432 0.4476 7.1159 44 1 5.2259 2.1151 6.4986 45 1 5.9722 2.4581 10.0883 46 1 1.6084 -1.7283 1.2985 47 1 1.7629 -0.1662 2.1432 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344950196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:20 Heat of formation + Delta-G solvation = -56.292139 kcal Electronic energy + Delta-G solvation = -23291.437644 eV Core-core repulsion = 20087.162518 eV Total energy + Delta-G solvation = -3204.275125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.40337 -38.14495 -36.93057 -33.79958 -33.53874 -32.40124 -31.57860 -27.18452 -26.98690 -26.49774 -26.36110 -25.05153 -22.97057 -22.06771 -20.71955 -19.55002 -18.65484 -17.49522 -16.38443 -16.10283 -15.49222 -15.03083 -14.73921 -14.54674 -14.31894 -14.13666 -13.99960 -13.46535 -13.11845 -13.01305 -12.85034 -12.72781 -12.29913 -12.11559 -12.07807 -12.03160 -11.35658 -11.17474 -11.08001 -10.98860 -10.86731 -10.82620 -10.72715 -10.61491 -10.36921 -10.24679 -9.90067 -9.85416 -9.18215 -8.91936 -8.86071 -8.38261 -8.34156 -5.98341 -3.99749 2.77113 3.32778 3.38261 3.39278 3.39635 4.04561 4.40682 4.46562 4.52088 4.57653 4.81173 5.04796 5.13175 5.22705 5.24098 5.36986 5.40731 5.48063 5.50679 5.53215 5.66454 5.67480 5.70211 5.77243 5.82936 5.85761 5.90678 6.12176 6.19099 6.23668 6.30000 6.43893 6.50338 6.62914 6.64216 6.83509 7.05152 7.08603 7.09152 7.16956 7.66084 7.78877 8.00268 8.15168 8.42183 8.81219 9.04863 9.63169 11.13093 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030173 B = 0.003474 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.764283 B = 8058.030731 C = 8691.240482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 H 0.075 0.925 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.129 3.871 7 N -0.634 5.634 8 C 0.704 3.296 9 O -0.593 6.593 10 N -0.738 5.738 11 C 0.145 3.855 12 C -0.073 4.073 13 C -0.126 4.126 14 C -0.125 4.125 15 C 0.037 3.963 16 C -0.512 4.512 17 H 0.059 0.941 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.117 3.883 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.393 0.607 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.026 0.974 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.048 0.952 42 H 0.026 0.974 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.260 0.740 46 H 0.068 0.932 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.328 -6.406 -20.123 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 H 0.094 0.906 4 C -0.150 4.150 5 C -0.174 4.174 6 C 0.006 3.994 7 N -0.372 5.372 8 C 0.405 3.595 9 O -0.472 6.472 10 N -0.395 5.395 11 C 0.022 3.978 12 C -0.073 4.073 13 C -0.183 4.183 14 C -0.183 4.183 15 C -0.001 4.001 16 C -0.550 4.550 17 H 0.077 0.923 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.007 4.007 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.230 0.770 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.261 -6.378 -20.028 22.969 hybrid contribution -1.038 0.409 0.892 1.428 sum -10.300 -5.969 -19.136 22.537 Atomic orbital electron populations 1.21786 0.94388 1.02073 1.02189 1.21602 0.95837 1.00245 0.95072 0.90622 1.21569 0.95436 1.00658 0.97369 1.21939 0.95857 1.01704 0.97899 1.21405 0.99742 0.95613 0.82661 1.47257 1.05705 1.65540 1.18733 1.15925 0.85155 0.78208 0.80217 1.90894 1.12271 1.62463 1.81541 1.45553 1.10406 1.69989 1.13537 1.21495 0.92723 0.99614 0.83968 1.20915 0.96267 0.94870 0.95255 1.21747 0.98870 0.97884 0.99782 1.21748 0.99380 0.97680 0.99469 1.19080 0.94098 0.96699 0.90187 1.21146 0.93037 1.43080 0.97735 0.92327 1.25011 0.94843 0.95998 0.98619 1.69959 1.09258 1.47924 1.26247 0.86712 0.80401 0.79143 0.82041 1.20339 1.21407 1.20336 1.21755 0.80318 1.00503 0.98097 0.92446 0.92246 0.92341 0.91792 0.91791 0.91478 0.90838 0.88865 0.92065 0.76979 0.91983 0.92096 0.95459 0.91464 0.93343 0.91464 0.93328 0.95493 0.96315 0.96301 0.92984 0.91416 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.20 37.16 0.34 -0.58 16 2 C -0.11 -0.85 2.89 -90.27 -0.26 -1.11 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -0.80 5.16 -26.69 -0.14 -0.94 16 5 C -0.14 -1.13 6.08 -26.61 -0.16 -1.29 16 6 C 0.13 1.38 6.44 -3.71 -0.02 1.35 16 7 N -0.63 -7.89 2.97 -178.23 -0.53 -8.42 16 8 C 0.70 11.61 8.30 -86.92 -0.72 10.89 16 9 O -0.59 -12.16 15.77 5.29 0.08 -12.08 16 10 N -0.74 -11.54 4.87 -65.23 -0.32 -11.86 16 11 C 0.15 2.69 4.57 -4.04 -0.02 2.67 16 12 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 13 C -0.13 -2.23 8.05 37.15 0.30 -1.93 16 14 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 15 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 16 C -0.51 -13.63 7.65 -34.44 -0.26 -13.89 16 17 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 19 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 20 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.12 1.09 5.70 -3.48 -0.02 1.07 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.18 6.99 -51.93 -0.36 0.82 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.39 5.26 3.65 -40.82 -0.15 5.11 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 38 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.71 5.64 -51.93 -0.29 0.42 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -31.38 357.37 -9.02 -40.41 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.40 Total: 1.06 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -0.96 Total: -4.89 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.11 Total: -46.08 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.08 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.38 -9.02 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344950196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.887 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds