Wall clock time and date at job start Tue Mar 31 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.52382 * 2 1 4 4 C 1.53035 * 109.49780 * 120.08268 * 2 1 3 5 5 C 1.53039 * 109.53634 * 181.32056 * 4 2 1 6 6 C 1.53192 * 109.33964 * 298.61306 * 5 4 2 7 7 N 1.46999 * 108.73471 * 54.62148 * 6 5 4 8 8 C 1.34782 * 120.60791 * 126.38793 * 7 6 5 9 9 O 1.21593 * 119.99499 * 174.98824 * 8 7 6 10 10 N 1.34771 * 120.00512 * 354.99168 * 8 7 6 11 11 C 1.46496 * 120.00025 * 185.07036 * 10 8 7 12 12 C 1.53005 * 109.46936 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47055 * 300.00247 * 12 11 10 14 14 C 1.53000 * 109.47071 * 60.00110 * 12 11 10 15 15 C 1.53001 * 109.47085 * 180.02562 * 12 11 10 16 16 C 1.50699 * 109.47227 * 179.97438 * 15 12 11 17 17 H 1.08005 * 119.99745 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00248 * 180.02562 * 16 15 12 19 19 N 1.31513 * 120.00111 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99673 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47013 * 90.00399 * 20 18 16 22 22 H 1.48503 * 109.47049 * 210.00124 * 20 18 16 23 23 H 1.48498 * 109.47446 * 330.00276 * 20 18 16 24 24 C 1.46924 * 118.75916 * 306.41337 * 7 6 5 25 25 H 1.08999 * 109.46721 * 299.92150 * 1 2 3 26 26 H 1.09002 * 109.46939 * 59.91434 * 1 2 3 27 27 H 1.08999 * 109.47166 * 179.91695 * 1 2 3 28 28 H 1.08992 * 109.46552 * 61.29631 * 4 2 1 29 29 H 1.09003 * 109.44718 * 301.33095 * 4 2 1 30 30 H 1.09000 * 109.50334 * 58.58256 * 5 4 2 31 31 H 1.09007 * 109.49614 * 178.64800 * 5 4 2 32 32 H 1.08993 * 109.59369 * 174.44144 * 6 5 4 33 33 H 1.09004 * 109.58888 * 294.87086 * 6 5 4 34 34 H 0.97001 * 119.99789 * 5.07347 * 10 8 7 35 35 H 1.08996 * 109.47404 * 299.99764 * 11 10 8 36 36 H 1.09006 * 109.47359 * 60.00430 * 11 10 8 37 37 H 1.08994 * 109.47053 * 60.00123 * 13 12 11 38 38 H 1.08996 * 109.46986 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.46641 * 299.99872 * 13 12 11 40 40 H 1.09004 * 109.46909 * 60.00091 * 14 12 11 41 41 H 1.08998 * 109.46564 * 179.97438 * 14 12 11 42 42 H 1.09001 * 109.47035 * 300.00185 * 14 12 11 43 43 H 1.09000 * 109.46929 * 300.00498 * 15 12 11 44 44 H 1.09001 * 109.46814 * 60.00023 * 15 12 11 45 45 H 0.96994 * 119.99938 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.58467 * 293.81802 * 24 7 6 47 47 H 1.08998 * 109.70761 * 173.46359 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0274 0.0000 4 6 2.0409 -0.7231 1.2483 5 6 3.5709 -0.6949 1.2659 6 6 4.1061 -1.4268 0.0312 7 7 3.5046 -0.8291 -1.1696 8 6 4.2812 -0.3855 -2.1779 9 8 3.7714 0.0229 -3.2035 10 7 5.6228 -0.3947 -2.0496 11 6 6.4630 0.1890 -3.0981 12 6 7.9359 0.0495 -2.7080 13 6 8.1854 0.7816 -1.3879 14 6 8.2817 -1.4317 -2.5430 15 6 8.8134 0.6598 -3.8028 16 6 10.2641 0.5230 -3.4184 17 1 10.5332 0.0486 -2.4861 18 6 11.2477 1.0043 -4.2561 19 7 12.5137 0.8844 -3.9208 20 14 10.7820 1.8253 -5.8681 21 1 10.6035 3.2831 -5.6476 22 1 11.8595 1.6039 -6.8657 23 1 9.5130 1.2419 -6.3724 24 6 2.0413 -0.7237 -1.2496 25 1 -0.3633 0.5126 0.8907 26 1 -0.3633 0.5152 -0.8892 27 1 -0.3633 -1.0276 -0.0015 28 1 1.6968 -1.7572 1.2353 29 1 1.6582 -0.2243 2.1387 30 1 3.9160 0.3390 1.2540 31 1 3.9335 -1.1891 2.1674 32 1 5.1903 -1.3248 -0.0129 33 1 3.8383 -2.4820 0.0871 34 1 6.0320 -0.7879 -1.2629 35 1 6.2849 -0.3322 -4.0386 36 1 6.2170 1.2445 -3.2153 37 1 7.5603 0.3473 -0.6078 38 1 9.2347 0.6826 -1.1102 39 1 7.9390 1.8369 -1.5055 40 1 8.1039 -1.9532 -3.4836 41 1 9.3311 -1.5310 -2.2656 42 1 7.6565 -1.8660 -1.7629 43 1 8.6356 0.1386 -4.7435 44 1 8.5669 1.7151 -3.9199 45 1 13.2056 1.2227 -4.5104 46 1 1.6053 -1.7216 -1.2981 47 1 1.7616 -0.1592 -2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344950197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:22 Heat of formation + Delta-G solvation = -52.694231 kcal Electronic energy + Delta-G solvation = -23262.080172 eV Core-core repulsion = 20057.961064 eV Total energy + Delta-G solvation = -3204.119108 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.45961 -38.23175 -37.00151 -34.24411 -33.24926 -32.03580 -31.95430 -27.89829 -27.21044 -26.54776 -26.32947 -24.92898 -22.55448 -22.34872 -20.61182 -19.59639 -18.67881 -17.53019 -16.80904 -16.19350 -15.56647 -15.19333 -14.71953 -14.53665 -14.27445 -14.10339 -13.90267 -13.58742 -13.37131 -13.19224 -12.89403 -12.70338 -12.34072 -12.26627 -12.16637 -12.08053 -11.40146 -11.24114 -11.13512 -11.08864 -11.00847 -10.97743 -10.64317 -10.60225 -10.44855 -10.01084 -9.94995 -9.73198 -9.49424 -8.98045 -8.93142 -8.52461 -8.44716 -6.03301 -4.00441 2.70628 3.32912 3.33628 3.40876 3.45601 3.98082 4.43529 4.47031 4.50561 4.54831 4.71909 4.96894 5.11568 5.18500 5.29632 5.30204 5.39990 5.40288 5.45070 5.51025 5.56674 5.60032 5.65761 5.67999 5.79941 5.83215 5.89722 6.10011 6.13330 6.14411 6.19460 6.34880 6.44405 6.53605 6.60706 6.75662 6.92292 7.01564 7.02565 7.06603 7.22346 7.38820 7.79229 8.08590 8.53793 8.74288 9.00696 9.59602 11.09462 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034240 B = 0.003433 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.554349 B = 8153.056266 C = 8586.862884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 H 0.074 0.926 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.111 3.889 7 N -0.634 5.634 8 C 0.704 3.296 9 O -0.594 6.594 10 N -0.737 5.737 11 C 0.143 3.857 12 C -0.063 4.063 13 C -0.127 4.127 14 C -0.127 4.127 15 C -0.002 4.002 16 C -0.510 4.510 17 H 0.078 0.922 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.265 1.265 24 C 0.136 3.864 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.394 0.606 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.029 0.971 43 H 0.019 0.981 44 H 0.014 0.986 45 H 0.262 0.738 46 H 0.061 0.939 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.085 -4.826 11.723 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.175 4.175 6 C -0.012 4.012 7 N -0.372 5.372 8 C 0.406 3.594 9 O -0.473 6.473 10 N -0.395 5.395 11 C 0.020 3.980 12 C -0.063 4.063 13 C -0.184 4.184 14 C -0.184 4.184 15 C -0.040 4.040 16 C -0.548 4.548 17 H 0.096 0.904 18 C -0.134 4.134 19 N -0.544 5.544 20 Si 0.702 3.298 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.189 1.189 24 C 0.012 3.988 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.232 0.768 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.037 0.963 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.241 -4.470 10.879 24.280 hybrid contribution 0.167 0.299 -0.441 0.559 sum -21.074 -4.171 10.437 23.884 Atomic orbital electron populations 1.21757 0.94449 1.01975 1.02045 1.21545 0.95831 1.00320 0.95159 0.90766 1.21564 0.95130 1.00749 0.97594 1.21932 0.96265 1.01639 0.97629 1.21625 0.97845 0.97093 0.84666 1.47264 1.06408 1.65359 1.18130 1.15910 0.81771 0.78630 0.83118 1.90893 1.73460 1.54532 1.28399 1.45502 1.04125 1.64414 1.25436 1.21501 0.89470 0.97660 0.89403 1.20700 0.91527 0.96376 0.97743 1.21763 1.02271 0.99262 0.95154 1.21759 1.02128 0.94675 0.99885 1.19588 0.95593 0.95351 0.93428 1.21081 0.88299 1.38462 1.06971 0.90407 1.24995 0.94910 0.95655 0.97879 1.69900 0.99461 1.47272 1.37741 0.86859 0.78488 0.80224 0.84209 1.20379 1.21529 1.18938 1.21460 0.78315 1.00311 0.98686 0.92410 0.92335 0.92516 0.91776 0.91737 0.91304 0.90653 0.90394 0.91396 0.76806 0.91971 0.92157 0.95226 0.90899 0.93410 0.93361 0.90897 0.95219 0.96307 0.96788 0.92810 0.92065 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.20 37.16 0.34 -0.61 16 2 C -0.11 -0.90 2.87 -90.50 -0.26 -1.16 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.11 -0.78 5.17 -26.69 -0.14 -0.92 16 5 C -0.14 -1.01 6.08 -26.61 -0.16 -1.17 16 6 C 0.11 0.98 6.44 -3.67 -0.02 0.96 16 7 N -0.63 -7.61 2.97 -178.44 -0.53 -8.14 16 8 C 0.70 11.20 8.30 -86.92 -0.72 10.48 16 9 O -0.59 -11.78 15.79 5.28 0.08 -11.69 16 10 N -0.74 -11.02 4.87 -65.22 -0.32 -11.34 16 11 C 0.14 2.50 4.57 -4.04 -0.02 2.49 16 12 C -0.06 -1.17 0.54 -154.50 -0.08 -1.25 16 13 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 14 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 15 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 16 C -0.51 -13.68 8.20 -34.44 -0.28 -13.96 16 17 H 0.08 2.20 5.92 -52.48 -0.31 1.89 16 18 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 19 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 20 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 24 C 0.14 1.42 5.70 -3.71 -0.02 1.40 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.08 0.67 5.57 -51.93 -0.29 0.39 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.39 5.05 3.62 -40.82 -0.15 4.90 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 38 H 0.07 1.42 6.61 -51.93 -0.34 1.07 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 42 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 43 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 44 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.09 1.15 7.04 -51.93 -0.37 0.79 16 LS Contribution 353.72 15.07 5.33 5.33 Total: -1.00 -31.69 353.72 -8.65 -40.34 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -8.37 Total: 0.98 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -0.95 Total: -5.92 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -0.07 Total: -46.00 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.69 -8.65 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344950197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.358 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds