Wall clock time and date at job start Tue Mar 31 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.52382 * 2 1 4 4 C 1.53035 * 109.49780 * 120.08268 * 2 1 3 5 5 C 1.53039 * 109.53634 * 181.32056 * 4 2 1 6 6 C 1.53192 * 109.33964 * 298.61306 * 5 4 2 7 7 N 1.46999 * 108.73471 * 54.62148 * 6 5 4 8 8 C 1.34782 * 120.60791 * 126.38793 * 7 6 5 9 9 O 1.21593 * 119.99499 * 174.98824 * 8 7 6 10 10 N 1.34771 * 120.00512 * 354.99168 * 8 7 6 11 11 C 1.46496 * 120.00025 * 185.07036 * 10 8 7 12 12 C 1.53005 * 109.46936 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47055 * 300.00247 * 12 11 10 14 14 C 1.53000 * 109.47071 * 60.00110 * 12 11 10 15 15 C 1.53001 * 109.47085 * 180.02562 * 12 11 10 16 16 C 1.50699 * 109.47227 * 179.97438 * 15 12 11 17 17 H 1.08005 * 119.99745 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00248 * 180.02562 * 16 15 12 19 19 N 1.31513 * 120.00111 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99673 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47013 * 90.00399 * 20 18 16 22 22 H 1.48503 * 109.47049 * 210.00124 * 20 18 16 23 23 H 1.48498 * 109.47446 * 330.00276 * 20 18 16 24 24 C 1.46924 * 118.75916 * 306.41337 * 7 6 5 25 25 H 1.08999 * 109.46721 * 299.92150 * 1 2 3 26 26 H 1.09002 * 109.46939 * 59.91434 * 1 2 3 27 27 H 1.08999 * 109.47166 * 179.91695 * 1 2 3 28 28 H 1.08992 * 109.46552 * 61.29631 * 4 2 1 29 29 H 1.09003 * 109.44718 * 301.33095 * 4 2 1 30 30 H 1.09000 * 109.50334 * 58.58256 * 5 4 2 31 31 H 1.09007 * 109.49614 * 178.64800 * 5 4 2 32 32 H 1.08993 * 109.59369 * 174.44144 * 6 5 4 33 33 H 1.09004 * 109.58888 * 294.87086 * 6 5 4 34 34 H 0.97001 * 119.99789 * 5.07347 * 10 8 7 35 35 H 1.08996 * 109.47404 * 299.99764 * 11 10 8 36 36 H 1.09006 * 109.47359 * 60.00430 * 11 10 8 37 37 H 1.08994 * 109.47053 * 60.00123 * 13 12 11 38 38 H 1.08996 * 109.46986 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.46641 * 299.99872 * 13 12 11 40 40 H 1.09004 * 109.46909 * 60.00091 * 14 12 11 41 41 H 1.08998 * 109.46564 * 179.97438 * 14 12 11 42 42 H 1.09001 * 109.47035 * 300.00185 * 14 12 11 43 43 H 1.09000 * 109.46929 * 300.00498 * 15 12 11 44 44 H 1.09001 * 109.46814 * 60.00023 * 15 12 11 45 45 H 0.96994 * 119.99938 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.58467 * 293.81802 * 24 7 6 47 47 H 1.08998 * 109.70761 * 173.46359 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0274 0.0000 4 6 2.0409 -0.7231 1.2483 5 6 3.5709 -0.6949 1.2659 6 6 4.1061 -1.4268 0.0312 7 7 3.5046 -0.8291 -1.1696 8 6 4.2812 -0.3855 -2.1779 9 8 3.7714 0.0229 -3.2035 10 7 5.6228 -0.3947 -2.0496 11 6 6.4630 0.1890 -3.0981 12 6 7.9359 0.0495 -2.7080 13 6 8.1854 0.7816 -1.3879 14 6 8.2817 -1.4317 -2.5430 15 6 8.8134 0.6598 -3.8028 16 6 10.2641 0.5230 -3.4184 17 1 10.5332 0.0486 -2.4861 18 6 11.2477 1.0043 -4.2561 19 7 12.5137 0.8844 -3.9208 20 14 10.7820 1.8253 -5.8681 21 1 10.6035 3.2831 -5.6476 22 1 11.8595 1.6039 -6.8657 23 1 9.5130 1.2419 -6.3724 24 6 2.0413 -0.7237 -1.2496 25 1 -0.3633 0.5126 0.8907 26 1 -0.3633 0.5152 -0.8892 27 1 -0.3633 -1.0276 -0.0015 28 1 1.6968 -1.7572 1.2353 29 1 1.6582 -0.2243 2.1387 30 1 3.9160 0.3390 1.2540 31 1 3.9335 -1.1891 2.1674 32 1 5.1903 -1.3248 -0.0129 33 1 3.8383 -2.4820 0.0871 34 1 6.0320 -0.7879 -1.2629 35 1 6.2849 -0.3322 -4.0386 36 1 6.2170 1.2445 -3.2153 37 1 7.5603 0.3473 -0.6078 38 1 9.2347 0.6826 -1.1102 39 1 7.9390 1.8369 -1.5055 40 1 8.1039 -1.9532 -3.4836 41 1 9.3311 -1.5310 -2.2656 42 1 7.6565 -1.8660 -1.7629 43 1 8.6356 0.1386 -4.7435 44 1 8.5669 1.7151 -3.9199 45 1 13.2056 1.2227 -4.5104 46 1 1.6053 -1.7216 -1.2981 47 1 1.7616 -0.1592 -2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344950197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:22 Heat of formation + Delta-G solvation = -71.526205 kcal Electronic energy + Delta-G solvation = -23262.896788 eV Core-core repulsion = 20057.961064 eV Total energy + Delta-G solvation = -3204.935724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55019 -39.34981 -38.32030 -35.45249 -34.67196 -33.68774 -32.72301 -29.76190 -28.19903 -27.99855 -27.26800 -26.03694 -24.17091 -23.22112 -21.52384 -20.64904 -19.90790 -18.95136 -18.73858 -17.35221 -16.69242 -16.28538 -15.99917 -15.50844 -15.45683 -15.36170 -15.28660 -14.86171 -14.49305 -14.19412 -14.16857 -14.15797 -13.73341 -13.47129 -12.96749 -12.91339 -12.85164 -12.67907 -12.61224 -12.31061 -12.16674 -12.00922 -11.80675 -11.77271 -11.63834 -11.52341 -11.31710 -11.26406 -11.09275 -10.90439 -10.70219 -10.19528 -9.44735 -8.22296 -6.22172 1.35861 1.38853 1.49016 1.64605 2.12342 2.39339 2.94910 3.13256 3.78666 3.84750 3.91200 3.94377 4.05705 4.08882 4.14999 4.32875 4.44216 4.53138 4.63917 4.67546 4.70655 4.76495 4.83122 4.84704 4.91377 4.93555 4.94350 5.01420 5.08560 5.11905 5.20514 5.28430 5.28921 5.33675 5.36369 5.40212 5.48760 5.50521 5.55919 5.61003 5.68889 5.76313 5.94778 6.38287 6.84329 6.96433 7.40631 7.54572 8.93248 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034240 B = 0.003433 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.554349 B = 8153.056266 C = 8586.862884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.055 0.945 4 C -0.110 4.110 5 C -0.133 4.133 6 C 0.104 3.896 7 N -0.628 5.628 8 C 0.698 3.302 9 O -0.640 6.640 10 N -0.727 5.727 11 C 0.157 3.843 12 C -0.057 4.057 13 C -0.121 4.121 14 C -0.122 4.122 15 C -0.003 4.003 16 C -0.501 4.501 17 H 0.054 0.946 18 C 0.007 3.993 19 N -0.951 5.951 20 Si 0.932 3.068 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.253 1.253 24 C 0.131 3.869 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.406 0.594 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.014 0.986 44 H 0.013 0.987 45 H 0.263 0.737 46 H 0.078 0.922 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.281 -5.656 13.209 27.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.074 0.926 4 C -0.147 4.147 5 C -0.171 4.171 6 C -0.018 4.018 7 N -0.364 5.364 8 C 0.400 3.600 9 O -0.522 6.522 10 N -0.386 5.386 11 C 0.032 3.968 12 C -0.058 4.058 13 C -0.179 4.179 14 C -0.179 4.179 15 C -0.041 4.041 16 C -0.539 4.539 17 H 0.072 0.928 18 C -0.189 4.189 19 N -0.592 5.592 20 Si 0.758 3.242 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.177 1.177 24 C 0.009 3.991 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.246 0.754 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.032 0.968 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.463 -5.325 12.423 27.078 hybrid contribution 0.808 0.506 -0.814 1.254 sum -22.655 -4.819 11.609 25.908 Atomic orbital electron populations 1.21735 0.93111 1.02779 1.02246 1.21486 0.96886 0.99104 0.94814 0.92640 1.21567 0.94745 1.01380 0.97008 1.21926 0.96591 1.00881 0.97691 1.21929 0.98014 0.98171 0.83727 1.47367 1.06787 1.64241 1.18041 1.16098 0.81962 0.78595 0.83380 1.90862 1.74235 1.56579 1.30545 1.45223 1.03821 1.64329 1.25213 1.21133 0.88820 0.97148 0.89678 1.20560 0.91460 0.96932 0.96829 1.21682 1.01410 0.99290 0.95483 1.21682 1.01288 0.94012 1.00922 1.19560 0.94106 0.95615 0.94815 1.21356 0.90278 1.36563 1.05693 0.92783 1.25803 0.94865 0.96842 1.01429 1.70032 1.00599 1.49308 1.39296 0.85920 0.78533 0.79474 0.80296 1.19708 1.21433 1.17697 1.21600 0.77575 1.01131 0.98835 0.91343 0.93061 0.91381 0.90477 0.90542 0.92647 0.88332 0.90073 0.89403 0.75352 0.93163 0.93128 0.91600 0.93346 0.93733 0.93769 0.93321 0.91587 0.96754 0.96887 0.92849 0.90386 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.20 71.98 0.66 -0.90 16 2 C -0.10 -1.50 2.87 -10.72 -0.03 -1.54 16 3 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 4 C -0.11 -1.14 5.17 30.62 0.16 -0.98 16 5 C -0.13 -1.50 6.08 30.67 0.19 -1.32 16 6 C 0.10 1.49 6.44 86.35 0.56 2.05 16 7 N -0.63 -13.93 2.97 -836.72 -2.49 -16.41 16 8 C 0.70 21.47 8.30 179.05 1.49 22.95 16 9 O -0.64 -25.47 15.79 -4.01 -0.06 -25.54 16 10 N -0.73 -20.44 4.87 -478.53 -2.33 -22.77 16 11 C 0.16 5.33 4.57 86.38 0.39 5.72 16 12 C -0.06 -2.07 0.54 -52.18 -0.03 -2.10 16 13 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 14 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 15 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 16 C -0.50 -27.26 8.20 25.60 0.21 -27.05 16 17 H 0.05 3.15 5.92 -2.91 -0.02 3.13 16 18 C 0.01 0.40 5.47 84.65 0.46 0.86 16 19 N -0.95 -58.69 13.96 21.45 0.30 -58.39 16 20 Si 0.93 44.78 27.47 68.60 1.88 46.66 16 21 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.25 -11.56 6.54 99.48 0.65 -10.91 16 24 C 0.13 2.58 5.70 86.36 0.49 3.07 16 25 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.08 1.11 5.57 -2.39 -0.01 1.09 16 33 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.41 9.20 3.62 -92.71 -0.34 8.86 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.07 1.70 6.86 -2.39 -0.02 1.69 16 38 H 0.05 1.87 6.61 -2.39 -0.02 1.85 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.05 1.88 6.62 -2.39 -0.02 1.87 16 42 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 43 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 44 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 45 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 46 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.06 1.64 7.04 -2.39 -0.02 1.63 16 Total: -1.00 -70.32 353.72 3.64 -66.68 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.54 Total: 16.07 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 5.80 Total: -6.30 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -4.52 Total: -97.58 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.06 Total: -25.54 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -70.32 3.64 -66.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344950197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.848 kcal (2) G-P(sol) polarization free energy of solvation -70.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds