Wall clock time and date at job start Tue Mar 31 2020 06:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.45696 * 2 1 4 4 C 1.53038 * 109.45961 * 240.02495 * 2 1 3 5 5 C 1.53118 * 109.27937 * 299.16524 * 4 2 1 6 6 H 1.09001 * 109.51955 * 62.25369 * 5 4 2 7 7 C 1.53003 * 109.52379 * 182.43959 * 5 4 2 8 8 C 1.52995 * 109.47176 * 179.68414 * 7 5 4 9 9 C 1.52995 * 109.47299 * 299.68478 * 7 5 4 10 10 C 1.52996 * 109.46935 * 59.68583 * 7 5 4 11 11 C 1.53113 * 109.16287 * 302.34583 * 5 4 2 12 12 C 1.53040 * 109.27788 * 57.65547 * 11 5 4 13 13 N 1.46842 * 109.52160 * 300.81883 * 12 11 5 14 14 C 1.46896 * 111.00170 * 185.83834 * 13 12 11 15 15 C 1.50703 * 109.47254 * 66.04785 * 14 13 12 16 16 O 1.21293 * 119.99482 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00290 * 180.02562 * 15 14 13 18 18 C 1.37092 * 119.99729 * 180.27555 * 17 15 14 19 19 H 1.08002 * 120.00496 * 359.72414 * 18 17 15 20 20 C 1.38958 * 120.00096 * 179.72242 * 18 17 15 21 21 N 1.31414 * 119.99347 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00310 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47201 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47346 * 119.99877 * 22 20 18 25 25 H 1.48506 * 109.46753 * 239.99977 * 22 20 18 26 26 H 1.09002 * 109.46934 * 300.02694 * 1 2 3 27 27 H 1.09003 * 109.47122 * 60.02120 * 1 2 3 28 28 H 1.08991 * 109.47546 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.50390 * 179.22383 * 4 2 1 30 30 H 1.08998 * 109.53453 * 59.13055 * 4 2 1 31 31 H 1.08997 * 109.47166 * 60.00126 * 8 7 5 32 32 H 1.09004 * 109.47249 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47458 * 300.00471 * 8 7 5 34 34 H 1.09010 * 109.47011 * 59.99920 * 9 7 5 35 35 H 1.08998 * 109.47605 * 179.97438 * 9 7 5 36 36 H 1.09003 * 109.47186 * 300.00314 * 9 7 5 37 37 H 1.08999 * 109.47262 * 59.99827 * 10 7 5 38 38 H 1.09005 * 109.47411 * 180.02562 * 10 7 5 39 39 H 1.09004 * 109.47552 * 299.99823 * 10 7 5 40 40 H 1.09001 * 109.50461 * 297.71223 * 11 5 4 41 41 H 1.09006 * 109.53913 * 177.61112 * 11 5 4 42 42 H 1.09001 * 109.46445 * 180.80326 * 12 11 5 43 43 H 1.08995 * 109.46210 * 60.83350 * 12 11 5 44 44 H 1.08998 * 109.47322 * 306.04788 * 14 13 12 45 45 H 1.09002 * 109.47668 * 186.04985 * 14 13 12 46 46 H 0.97001 * 119.99727 * 359.97438 * 17 15 14 47 47 H 0.97004 * 119.99790 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 1.5441 -2.1696 -1.2356 6 1 0.4547 -2.1821 -1.2672 7 6 2.1008 -2.9126 -2.4518 8 6 1.6112 -4.3620 -2.4320 9 6 1.6179 -2.2286 -3.7323 10 6 3.6299 -2.8902 -2.4071 11 6 2.0267 -2.8532 0.0467 12 6 1.5172 -2.0705 1.2591 13 7 2.0192 -0.6919 1.1994 14 6 1.6651 0.0505 2.4165 15 6 2.3899 -0.5441 3.5964 16 8 3.1284 -1.4933 3.4389 17 7 2.2167 -0.0219 4.8268 18 6 2.8805 -0.5594 5.8991 19 1 3.5387 -1.4040 5.7588 20 6 2.7065 -0.0174 7.1667 21 7 1.9060 1.0108 7.3374 22 14 3.6114 -0.7492 8.6278 23 1 4.4449 -1.8908 8.1727 24 1 4.4817 0.2864 9.2404 25 1 2.6265 -1.2253 9.6321 26 1 -0.3633 0.5143 0.8898 27 1 -0.3633 0.5135 -0.8902 28 1 -0.3634 -1.0276 0.0005 29 1 3.1297 -0.7093 -1.2577 30 1 1.6643 -0.2166 -2.1403 31 1 0.5218 -4.3779 -2.4638 32 1 2.0081 -4.8914 -3.2982 33 1 1.9552 -4.8493 -1.5197 34 1 1.9668 -1.1959 -3.7464 35 1 2.0148 -2.7576 -4.5987 36 1 0.5285 -2.2445 -3.7641 37 1 3.9740 -3.3775 -1.4948 38 1 4.0266 -3.4191 -3.2737 39 1 3.9788 -1.8576 -2.4212 40 1 3.1164 -2.8752 0.0594 41 1 1.6417 -3.8724 0.0835 42 1 1.8710 -2.5466 2.1736 43 1 0.4273 -2.0607 1.2531 44 1 0.5895 -0.0133 2.5810 45 1 1.9537 1.0954 2.3018 46 1 1.6258 0.7370 4.9527 47 1 1.7841 1.3889 8.2223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347594807.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:16 Heat of formation + Delta-G solvation = -52.429893 kcal Electronic energy + Delta-G solvation = -23660.307328 eV Core-core repulsion = 20456.199682 eV Total energy + Delta-G solvation = -3204.107646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18702 -38.18613 -36.63466 -33.88470 -31.85509 -31.58938 -31.08559 -28.08876 -27.37844 -27.14421 -26.35251 -24.47958 -22.89229 -22.31930 -19.31609 -18.98643 -18.01279 -17.75686 -16.14236 -15.78658 -14.94771 -14.78226 -14.56389 -14.19870 -14.12109 -13.93883 -13.91193 -13.62895 -13.17376 -13.03035 -12.86791 -12.30289 -12.14627 -11.96230 -11.81929 -11.77050 -11.57490 -11.44995 -11.24220 -11.13510 -11.05004 -10.97175 -10.84890 -10.57277 -10.31780 -10.19074 -10.08629 -9.87992 -9.76353 -9.40775 -8.33426 -7.91958 -7.67364 -6.37875 -3.78232 3.18719 3.28908 3.36278 3.96701 4.08501 4.30851 4.63801 4.69411 4.75526 5.00880 5.14254 5.21454 5.27828 5.30498 5.37086 5.43410 5.50020 5.55046 5.60108 5.63351 5.68467 5.72191 5.78346 5.82375 5.89678 5.91656 5.94572 5.97332 6.02099 6.07939 6.12077 6.14606 6.17172 6.25850 6.33806 6.37561 6.42162 6.48395 6.66163 6.74419 7.47484 7.58612 7.61691 8.11710 8.67054 9.22837 9.59960 10.12298 10.80151 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032950 B = 0.003580 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.572296 B = 7820.286000 C = 8300.920927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.079 3.921 3 H 0.077 0.923 4 C -0.105 4.105 5 C -0.077 4.077 6 H 0.065 0.935 7 C -0.064 4.064 8 C -0.143 4.143 9 C -0.142 4.142 10 C -0.145 4.145 11 C -0.109 4.109 12 C 0.050 3.950 13 N -0.506 5.506 14 C 0.045 3.955 15 C 0.445 3.555 16 O -0.576 6.576 17 N -0.567 5.567 18 C -0.296 4.296 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.023 0.977 44 H 0.046 0.954 45 H 0.085 0.915 46 H 0.391 0.609 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 -3.433 -19.087 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.030 4.030 3 H 0.096 0.904 4 C -0.143 4.143 5 C -0.096 4.096 6 H 0.083 0.917 7 C -0.064 4.064 8 C -0.200 4.200 9 C -0.199 4.199 10 C -0.202 4.202 11 C -0.147 4.147 12 C -0.078 4.078 13 N -0.229 5.229 14 C -0.086 4.086 15 C 0.231 3.769 16 O -0.460 6.460 17 N -0.204 5.204 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.117 0.883 43 H 0.041 0.959 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.224 0.776 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.808 -4.003 -19.040 19.658 hybrid contribution -0.969 0.359 0.975 1.420 sum -3.777 -3.644 -18.065 18.812 Atomic orbital electron populations 1.22537 0.98260 1.02270 1.01744 1.21727 0.92282 0.97976 0.91015 0.90434 1.21719 1.01703 0.94880 0.95963 1.21258 0.99474 0.94736 0.94087 0.91651 1.20524 0.95808 0.95154 0.94886 1.21918 1.00680 0.95701 1.01708 1.21913 1.00696 1.00562 0.96703 1.21983 0.94588 1.02044 1.01589 1.21698 1.02158 0.97781 0.93034 1.22262 0.95974 0.89055 1.00499 1.61728 1.59169 1.01885 1.00165 1.21836 0.97867 0.98352 0.90536 1.19806 0.86497 0.86855 0.83769 1.90481 1.41151 1.29748 1.84640 1.41882 1.41855 1.30877 1.05760 1.19744 1.23352 1.14270 0.85225 0.87909 1.25250 0.97463 0.96348 0.98983 1.69626 1.37358 1.23436 1.24069 0.85816 0.79037 0.78929 0.80661 1.19239 1.20791 1.20836 0.92657 0.92569 0.91970 0.90785 0.91903 0.93024 0.93132 0.92168 0.92406 0.93137 0.93030 0.91990 0.93403 0.92282 0.90679 0.92067 0.88256 0.95935 0.93568 0.89631 0.77563 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 8.18 37.16 0.30 -1.95 16 2 C 0.08 1.05 2.92 -67.72 -0.20 0.85 16 3 H 0.08 1.01 8.01 -51.93 -0.42 0.59 16 4 C -0.11 -1.21 4.18 -26.65 -0.11 -1.33 16 5 C -0.08 -0.87 1.31 -90.50 -0.12 -0.99 16 6 H 0.07 0.74 6.56 -51.93 -0.34 0.40 16 7 C -0.06 -0.62 0.57 -154.51 -0.09 -0.71 16 8 C -0.14 -1.32 8.12 37.16 0.30 -1.02 16 9 C -0.14 -1.21 8.13 37.15 0.30 -0.91 16 10 C -0.14 -1.46 7.77 37.16 0.29 -1.17 16 11 C -0.11 -1.49 4.66 -26.65 -0.12 -1.62 16 12 C 0.05 0.82 4.81 -3.83 -0.02 0.81 16 13 N -0.51 -8.54 4.34 -228.13 -0.99 -9.53 16 14 C 0.05 0.83 4.90 -4.98 -0.02 0.81 16 15 C 0.45 10.64 7.46 -10.98 -0.08 10.56 16 16 O -0.58 -15.59 13.92 5.55 0.08 -15.51 16 17 N -0.57 -14.54 5.29 -10.96 -0.06 -14.60 16 18 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 19 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.56 5.50 -17.46 -0.10 0.47 16 21 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 22 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H 0.05 0.69 6.78 -51.93 -0.35 0.33 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.76 4.80 -51.93 -0.25 0.51 16 29 H 0.07 0.93 6.31 -51.93 -0.33 0.60 16 30 H 0.06 0.63 6.58 -51.93 -0.34 0.28 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.59 6.49 -51.93 -0.34 0.25 16 34 H 0.06 0.49 6.50 -51.92 -0.34 0.15 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.69 6.38 -51.93 -0.33 0.36 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.61 6.37 -51.93 -0.33 0.27 16 40 H 0.07 1.13 6.31 -51.93 -0.33 0.81 16 41 H 0.06 0.78 6.58 -51.93 -0.34 0.43 16 42 H 0.10 2.03 5.80 -51.93 -0.30 1.73 16 43 H 0.02 0.36 6.19 -51.93 -0.32 0.03 16 44 H 0.05 0.79 6.96 -51.93 -0.36 0.43 16 45 H 0.09 1.45 7.98 -51.93 -0.41 1.03 16 46 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 342.50 15.07 5.16 5.16 Total: -1.00 -29.91 342.50 -7.72 -37.63 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.80 Total: 9.41 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 0.19 Total: -4.68 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.32 Total: -48.25 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.08 Total: -15.51 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.91 -7.72 -37.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347594807.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.799 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds