Wall clock time and date at job start Tue Mar 31 2020 06:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46224 * 2 1 4 4 C 1.53033 * 109.46638 * 119.96727 * 2 1 3 5 5 C 1.53119 * 109.27632 * 60.83663 * 4 2 1 6 6 H 1.09004 * 109.52846 * 297.75423 * 5 4 2 7 7 C 1.52995 * 109.52693 * 177.62273 * 5 4 2 8 8 C 1.52999 * 109.46863 * 60.00183 * 7 5 4 9 9 C 1.53004 * 109.47569 * 179.97438 * 7 5 4 10 10 C 1.52996 * 109.47416 * 300.00453 * 7 5 4 11 11 C 1.53123 * 109.15795 * 57.65434 * 5 4 2 12 12 C 1.53028 * 109.28036 * 302.34439 * 11 5 4 13 13 N 1.46848 * 109.52086 * 59.18378 * 12 11 5 14 14 C 1.46904 * 110.99908 * 174.15987 * 13 12 11 15 15 C 1.50700 * 109.47124 * 294.20720 * 14 13 12 16 16 O 1.21292 * 119.99931 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99956 * 180.02562 * 15 14 13 18 18 C 1.37104 * 119.99857 * 179.97438 * 17 15 14 19 19 H 1.07995 * 120.00058 * 0.27796 * 18 17 15 20 20 C 1.38955 * 119.99721 * 179.97438 * 18 17 15 21 21 N 1.31408 * 119.99445 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99993 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47326 * 89.99949 * 22 20 18 24 24 H 1.48506 * 109.46545 * 209.99699 * 22 20 18 25 25 H 1.48498 * 109.47210 * 329.99410 * 22 20 18 26 26 H 1.08998 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47228 * 299.97813 * 1 2 3 28 28 H 1.09001 * 109.46985 * 59.97700 * 1 2 3 29 29 H 1.09001 * 109.50525 * 180.77607 * 4 2 1 30 30 H 1.08996 * 109.50275 * 300.90143 * 4 2 1 31 31 H 1.08996 * 109.47425 * 59.99806 * 8 7 5 32 32 H 1.08998 * 109.47449 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47252 * 299.99980 * 8 7 5 34 34 H 1.09002 * 109.46859 * 60.00093 * 9 7 5 35 35 H 1.08998 * 109.47103 * 180.02562 * 9 7 5 36 36 H 1.08996 * 109.46739 * 300.00206 * 9 7 5 37 37 H 1.09003 * 109.47041 * 59.99228 * 10 7 5 38 38 H 1.09000 * 109.47593 * 179.97438 * 10 7 5 39 39 H 1.09002 * 109.46812 * 299.99785 * 10 7 5 40 40 H 1.08998 * 109.50353 * 62.29136 * 11 5 4 41 41 H 1.09007 * 109.50395 * 182.36156 * 11 5 4 42 42 H 1.08992 * 109.46814 * 299.16243 * 12 11 5 43 43 H 1.09009 * 109.46165 * 179.19600 * 12 11 5 44 44 H 1.08997 * 109.47232 * 174.20321 * 14 13 12 45 45 H 1.09002 * 109.47005 * 54.20820 * 14 13 12 46 46 H 0.96999 * 120.00050 * 0.02562 * 17 15 14 47 47 H 0.97000 * 119.99412 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7207 1.2500 5 6 1.5444 -2.1694 1.2357 6 1 0.4549 -2.1821 1.2673 7 6 2.0998 -2.9119 2.4527 8 6 1.6220 -2.2227 3.7324 9 6 1.6034 -4.3591 2.4376 10 6 3.6290 -2.8962 2.4055 11 6 2.0270 -2.8530 -0.0466 12 6 1.5174 -2.0705 -1.2589 13 7 2.0194 -0.6918 -1.1993 14 6 1.6651 0.0505 -2.4166 15 6 2.3851 -0.5482 -3.5974 16 8 3.1213 -1.4993 -3.4403 17 7 2.2118 -0.0261 -4.8278 18 6 2.8672 -0.5704 -5.9020 19 1 3.5189 -1.4203 -5.7629 20 6 2.6881 -0.0324 -7.1706 21 7 3.3167 -0.5539 -8.2000 22 14 1.5549 1.4327 -7.4123 23 1 2.3312 2.6894 -7.2601 24 1 0.9605 1.3797 -8.7722 25 1 0.4720 1.3938 -6.3969 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5135 0.8901 28 1 -0.3633 0.5142 -0.8898 29 1 3.1299 -0.7090 1.2576 30 1 1.6638 -0.2162 2.1399 31 1 0.5326 -2.2338 3.7660 32 1 2.0180 -2.7513 4.5994 33 1 1.9753 -1.1916 3.7434 34 1 1.9434 -4.8503 1.5260 35 1 1.9988 -4.8878 3.3049 36 1 0.5140 -4.3698 2.4715 37 1 3.9823 -1.8651 2.4165 38 1 4.0247 -3.4248 3.2728 39 1 3.9694 -3.3872 1.4939 40 1 3.1167 -2.8750 -0.0593 41 1 1.6422 -3.8723 -0.0826 42 1 0.4276 -2.0608 -1.2531 43 1 1.8713 -2.5467 -2.1735 44 1 1.9577 1.0944 -2.3037 45 1 0.5889 -0.0097 -2.5786 46 1 1.6239 0.7352 -4.9532 47 1 3.1920 -0.1781 -9.0855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347594811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:19 Heat of formation + Delta-G solvation = -45.209131 kcal Electronic energy + Delta-G solvation = -23713.786747 eV Core-core repulsion = 20509.992217 eV Total energy + Delta-G solvation = -3203.794530 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.25481 -38.35108 -36.72853 -33.94296 -31.96469 -31.69842 -31.46864 -28.15739 -27.41120 -27.25150 -26.45542 -24.39389 -22.85270 -22.37446 -19.36886 -19.15267 -18.26267 -17.98207 -16.20766 -15.79701 -15.04783 -14.92230 -14.68120 -14.36050 -14.16335 -14.03089 -13.88401 -13.45871 -13.15486 -13.01330 -12.96311 -12.46789 -12.28711 -12.11199 -11.99787 -11.87231 -11.75269 -11.59633 -11.30866 -11.22938 -11.11306 -11.02099 -10.92156 -10.62399 -10.56852 -10.13429 -9.95851 -9.91609 -9.81744 -9.46436 -8.46604 -8.13677 -7.78197 -6.27969 -3.78867 3.04654 3.08991 3.16835 3.79538 4.03340 4.13249 4.60098 4.64959 4.72371 4.83021 5.02439 5.14588 5.19799 5.26213 5.31424 5.37800 5.45150 5.51559 5.54163 5.60119 5.61832 5.68600 5.70112 5.75355 5.80947 5.86276 5.89742 5.91316 5.95443 5.99334 6.04129 6.05852 6.10115 6.13118 6.22203 6.31825 6.36249 6.44939 6.60315 6.70053 7.35321 7.51377 7.63761 8.18936 8.64640 8.99326 9.46708 9.88896 10.85389 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033784 B = 0.003739 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.593251 B = 7487.751769 C = 7943.534886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.079 3.921 3 H 0.078 0.922 4 C -0.105 4.105 5 C -0.077 4.077 6 H 0.065 0.935 7 C -0.064 4.064 8 C -0.142 4.142 9 C -0.143 4.143 10 C -0.145 4.145 11 C -0.110 4.110 12 C 0.048 3.952 13 N -0.506 5.506 14 C 0.042 3.958 15 C 0.454 3.546 16 O -0.558 6.558 17 N -0.593 5.593 18 C -0.303 4.303 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.883 5.883 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.023 0.977 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.160 0.222 21.508 22.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.030 4.030 3 H 0.096 0.904 4 C -0.143 4.143 5 C -0.095 4.095 6 H 0.083 0.917 7 C -0.064 4.064 8 C -0.199 4.199 9 C -0.200 4.200 10 C -0.202 4.202 11 C -0.147 4.147 12 C -0.079 4.079 13 N -0.229 5.229 14 C -0.089 4.089 15 C 0.240 3.760 16 O -0.439 6.439 17 N -0.233 5.233 18 C -0.431 4.431 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.524 5.524 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.196 1.196 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.118 0.882 44 H 0.105 0.895 45 H 0.065 0.935 46 H 0.202 0.798 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.087 -0.456 21.402 22.256 hybrid contribution -1.875 1.327 -0.519 2.355 sum -7.961 0.871 20.883 22.366 Atomic orbital electron populations 1.22539 0.98243 1.02343 1.01709 1.21733 0.92279 0.97985 0.90995 0.90401 1.21721 1.01761 0.94910 0.95889 1.21259 0.99466 0.94702 0.94121 0.91663 1.20525 0.95833 0.95169 0.94845 1.21914 1.00699 1.00536 0.96736 1.21919 1.00652 0.95704 1.01747 1.21983 0.94551 1.02045 1.01644 1.21698 1.02246 0.97830 0.92934 1.22284 0.96033 0.88911 1.00674 1.61734 1.59208 1.01949 1.00045 1.21875 0.97888 0.98476 0.90677 1.19705 0.86292 0.86697 0.83337 1.90523 1.40158 1.28919 1.84329 1.42225 1.43122 1.30681 1.07288 1.19428 1.24226 1.15247 0.84242 0.86303 1.25028 0.97789 0.98131 0.95255 1.69623 1.42092 1.41051 0.99593 0.86678 0.80961 0.83241 0.78544 1.19636 1.20256 1.19565 0.91889 0.92496 0.92766 0.90717 0.91851 0.93040 0.93109 0.92417 0.92141 0.93100 0.93034 0.92293 0.93368 0.91956 0.90592 0.91963 0.95847 0.88160 0.89479 0.93456 0.79793 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 8.18 37.16 0.30 -1.80 16 2 C 0.08 0.99 2.92 -67.72 -0.20 0.79 16 3 H 0.08 0.94 8.02 -51.93 -0.42 0.52 16 4 C -0.11 -1.16 4.18 -26.65 -0.11 -1.27 16 5 C -0.08 -0.83 1.30 -90.50 -0.12 -0.95 16 6 H 0.07 0.71 6.56 -51.93 -0.34 0.37 16 7 C -0.06 -0.60 0.57 -154.51 -0.09 -0.69 16 8 C -0.14 -1.17 8.12 37.16 0.30 -0.87 16 9 C -0.14 -1.29 8.13 37.16 0.30 -0.99 16 10 C -0.15 -1.43 7.77 37.16 0.29 -1.14 16 11 C -0.11 -1.46 4.67 -26.65 -0.12 -1.58 16 12 C 0.05 0.78 4.81 -3.84 -0.02 0.76 16 13 N -0.51 -8.14 4.34 -228.12 -0.99 -9.14 16 14 C 0.04 0.73 4.91 -4.97 -0.02 0.70 16 15 C 0.45 10.40 7.46 -10.99 -0.08 10.32 16 16 O -0.56 -14.88 13.90 5.55 0.08 -14.80 16 17 N -0.59 -14.29 5.09 -10.96 -0.06 -14.34 16 18 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 19 H 0.12 3.86 7.39 -52.49 -0.39 3.48 16 20 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -26.02 13.96 55.50 0.77 -25.24 16 22 Si 0.88 19.57 27.74 -169.99 -4.71 14.85 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 26 H 0.06 0.73 4.80 -51.93 -0.25 0.48 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.62 6.77 -51.93 -0.35 0.27 16 29 H 0.07 0.90 6.32 -51.93 -0.33 0.57 16 30 H 0.06 0.60 6.57 -51.93 -0.34 0.26 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.47 6.49 -51.93 -0.34 0.13 16 34 H 0.06 0.58 6.50 -51.93 -0.34 0.24 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.59 6.38 -51.93 -0.33 0.26 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.68 6.38 -51.93 -0.33 0.35 16 40 H 0.08 1.12 6.31 -51.93 -0.33 0.79 16 41 H 0.06 0.77 6.58 -51.93 -0.34 0.43 16 42 H 0.02 0.35 6.19 -51.93 -0.32 0.03 16 43 H 0.10 2.00 5.78 -51.92 -0.30 1.70 16 44 H 0.09 1.33 7.99 -51.93 -0.41 0.92 16 45 H 0.05 0.74 6.95 -51.93 -0.36 0.38 16 46 H 0.37 7.85 5.76 -40.82 -0.24 7.62 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 339.36 15.07 5.11 5.11 Total: -1.00 -31.11 339.36 -7.37 -38.48 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -7.76 Total: 9.54 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 0.18 Total: -4.46 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.27 Total: -48.72 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.08 Total: -14.80 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.71 Total: 14.85 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.11 -7.37 -38.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347594811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.729 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds