Wall clock time and date at job start Tue Mar 31 2020 06:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46224 * 2 1 4 4 C 1.53033 * 109.46638 * 119.96727 * 2 1 3 5 5 C 1.53119 * 109.27632 * 60.83663 * 4 2 1 6 6 H 1.09004 * 109.52846 * 297.75423 * 5 4 2 7 7 C 1.52995 * 109.52693 * 177.62273 * 5 4 2 8 8 C 1.52999 * 109.46863 * 60.00183 * 7 5 4 9 9 C 1.53004 * 109.47569 * 179.97438 * 7 5 4 10 10 C 1.52996 * 109.47416 * 300.00453 * 7 5 4 11 11 C 1.53123 * 109.15795 * 57.65434 * 5 4 2 12 12 C 1.53028 * 109.28036 * 302.34439 * 11 5 4 13 13 N 1.46848 * 109.52086 * 59.18378 * 12 11 5 14 14 C 1.46904 * 110.99908 * 174.15987 * 13 12 11 15 15 C 1.50700 * 109.47124 * 294.20720 * 14 13 12 16 16 O 1.21292 * 119.99931 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99956 * 180.02562 * 15 14 13 18 18 C 1.37104 * 119.99857 * 179.97438 * 17 15 14 19 19 H 1.07995 * 120.00058 * 0.27796 * 18 17 15 20 20 C 1.38955 * 119.99721 * 179.97438 * 18 17 15 21 21 N 1.31408 * 119.99445 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99993 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47326 * 89.99949 * 22 20 18 24 24 H 1.48506 * 109.46545 * 209.99699 * 22 20 18 25 25 H 1.48498 * 109.47210 * 329.99410 * 22 20 18 26 26 H 1.08998 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47228 * 299.97813 * 1 2 3 28 28 H 1.09001 * 109.46985 * 59.97700 * 1 2 3 29 29 H 1.09001 * 109.50525 * 180.77607 * 4 2 1 30 30 H 1.08996 * 109.50275 * 300.90143 * 4 2 1 31 31 H 1.08996 * 109.47425 * 59.99806 * 8 7 5 32 32 H 1.08998 * 109.47449 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47252 * 299.99980 * 8 7 5 34 34 H 1.09002 * 109.46859 * 60.00093 * 9 7 5 35 35 H 1.08998 * 109.47103 * 180.02562 * 9 7 5 36 36 H 1.08996 * 109.46739 * 300.00206 * 9 7 5 37 37 H 1.09003 * 109.47041 * 59.99228 * 10 7 5 38 38 H 1.09000 * 109.47593 * 179.97438 * 10 7 5 39 39 H 1.09002 * 109.46812 * 299.99785 * 10 7 5 40 40 H 1.08998 * 109.50353 * 62.29136 * 11 5 4 41 41 H 1.09007 * 109.50395 * 182.36156 * 11 5 4 42 42 H 1.08992 * 109.46814 * 299.16243 * 12 11 5 43 43 H 1.09009 * 109.46165 * 179.19600 * 12 11 5 44 44 H 1.08997 * 109.47232 * 174.20321 * 14 13 12 45 45 H 1.09002 * 109.47005 * 54.20820 * 14 13 12 46 46 H 0.96999 * 120.00050 * 0.02562 * 17 15 14 47 47 H 0.97000 * 119.99412 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7207 1.2500 5 6 1.5444 -2.1694 1.2357 6 1 0.4549 -2.1821 1.2673 7 6 2.0998 -2.9119 2.4527 8 6 1.6220 -2.2227 3.7324 9 6 1.6034 -4.3591 2.4376 10 6 3.6290 -2.8962 2.4055 11 6 2.0270 -2.8530 -0.0466 12 6 1.5174 -2.0705 -1.2589 13 7 2.0194 -0.6918 -1.1993 14 6 1.6651 0.0505 -2.4166 15 6 2.3851 -0.5482 -3.5974 16 8 3.1213 -1.4993 -3.4403 17 7 2.2118 -0.0261 -4.8278 18 6 2.8672 -0.5704 -5.9020 19 1 3.5189 -1.4203 -5.7629 20 6 2.6881 -0.0324 -7.1706 21 7 3.3167 -0.5539 -8.2000 22 14 1.5549 1.4327 -7.4123 23 1 2.3312 2.6894 -7.2601 24 1 0.9605 1.3797 -8.7722 25 1 0.4720 1.3938 -6.3969 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5135 0.8901 28 1 -0.3633 0.5142 -0.8898 29 1 3.1299 -0.7090 1.2576 30 1 1.6638 -0.2162 2.1399 31 1 0.5326 -2.2338 3.7660 32 1 2.0180 -2.7513 4.5994 33 1 1.9753 -1.1916 3.7434 34 1 1.9434 -4.8503 1.5260 35 1 1.9988 -4.8878 3.3049 36 1 0.5140 -4.3698 2.4715 37 1 3.9823 -1.8651 2.4165 38 1 4.0247 -3.4248 3.2728 39 1 3.9694 -3.3872 1.4939 40 1 3.1167 -2.8750 -0.0593 41 1 1.6422 -3.8723 -0.0826 42 1 0.4276 -2.0608 -1.2531 43 1 1.8713 -2.5467 -2.1735 44 1 1.9577 1.0944 -2.3037 45 1 0.5889 -0.0097 -2.5786 46 1 1.6239 0.7352 -4.9532 47 1 3.1920 -0.1781 -9.0855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347594811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:18 Heat of formation + Delta-G solvation = -66.652372 kcal Electronic energy + Delta-G solvation = -23714.716596 eV Core-core repulsion = 20509.992217 eV Total energy + Delta-G solvation = -3204.724379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.35845 -40.00232 -37.84158 -35.96286 -33.77202 -33.01888 -32.63926 -29.17578 -28.44757 -28.12967 -27.48120 -26.08319 -24.08129 -23.42145 -21.27276 -20.33069 -19.97261 -18.96811 -17.77205 -17.02042 -16.75286 -16.29011 -15.83709 -15.71693 -15.17168 -15.13432 -14.92407 -14.76180 -14.56060 -14.31140 -14.15030 -14.02556 -13.66222 -13.23166 -13.01534 -12.84048 -12.75629 -12.60491 -12.54346 -12.42333 -12.30728 -12.07434 -12.04257 -11.96776 -11.75493 -11.54653 -11.48212 -11.03272 -10.88930 -10.75098 -10.27814 -10.20112 -9.04588 -8.40892 -6.01209 1.29537 1.35302 1.43817 1.97788 2.23010 2.67445 3.14940 3.27957 3.75864 3.82839 3.86491 4.12187 4.17324 4.26686 4.31055 4.37140 4.39683 4.48903 4.52591 4.60202 4.63621 4.67231 4.80306 4.86504 4.89612 4.93811 4.98836 5.03477 5.12286 5.14460 5.16636 5.18040 5.25224 5.28824 5.31806 5.33873 5.45324 5.54177 5.58162 5.64571 5.73692 5.93738 6.16023 6.38432 6.61663 6.89865 7.41422 7.99618 8.77052 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033784 B = 0.003739 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.593251 B = 7487.751769 C = 7943.534886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.077 3.923 3 H 0.088 0.912 4 C -0.102 4.102 5 C -0.068 4.068 6 H 0.074 0.926 7 C -0.061 4.061 8 C -0.138 4.138 9 C -0.143 4.143 10 C -0.144 4.144 11 C -0.104 4.104 12 C 0.053 3.947 13 N -0.527 5.527 14 C 0.055 3.945 15 C 0.451 3.549 16 O -0.604 6.604 17 N -0.594 5.594 18 C -0.326 4.326 19 H 0.054 0.946 20 C -0.016 4.016 21 N -0.936 5.936 22 Si 0.965 3.035 23 H -0.257 1.257 24 H -0.275 1.275 25 H -0.233 1.233 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.036 0.964 43 H 0.050 0.950 44 H 0.116 0.884 45 H 0.073 0.927 46 H 0.388 0.612 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.012 2.939 24.099 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.031 4.031 3 H 0.106 0.894 4 C -0.139 4.139 5 C -0.086 4.086 6 H 0.092 0.908 7 C -0.061 4.061 8 C -0.195 4.195 9 C -0.200 4.200 10 C -0.202 4.202 11 C -0.141 4.141 12 C -0.075 4.075 13 N -0.252 5.252 14 C -0.077 4.077 15 C 0.239 3.761 16 O -0.488 6.488 17 N -0.236 5.236 18 C -0.455 4.455 19 H 0.072 0.928 20 C -0.214 4.214 21 N -0.577 5.577 22 Si 0.785 3.215 23 H -0.181 1.181 24 H -0.200 1.200 25 H -0.156 1.156 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.134 0.866 45 H 0.090 0.910 46 H 0.224 0.776 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.949 2.263 24.031 25.743 hybrid contribution -0.867 0.343 -1.294 1.595 sum -9.816 2.606 22.737 24.902 Atomic orbital electron populations 1.22474 0.96573 1.02298 1.02876 1.21882 0.93623 0.98127 0.89485 0.89363 1.21725 1.00989 0.94942 0.96287 1.21189 0.99814 0.94608 0.93031 0.90790 1.20504 0.95204 0.95396 0.95006 1.21876 1.01169 1.00602 0.95845 1.21916 1.01093 0.95471 1.01536 1.21971 0.95245 1.01825 1.01115 1.21629 1.00773 0.98146 0.93585 1.22116 0.96569 0.89278 0.99518 1.61685 1.60476 1.02056 1.00968 1.21797 0.98222 0.99236 0.88407 1.20950 0.85164 0.85561 0.84419 1.90515 1.42047 1.30955 1.85238 1.42049 1.43510 1.31404 1.06634 1.18996 1.25136 1.14743 0.86671 0.92776 1.26105 0.99485 1.01914 0.93902 1.69808 1.44049 1.43365 1.00482 0.85361 0.78964 0.77789 0.79381 1.18098 1.20000 1.15618 0.92492 0.90144 0.92801 0.92110 0.89212 0.92288 0.92422 0.91984 0.93419 0.92213 0.92343 0.92458 0.92334 0.93911 0.92848 0.91574 0.94562 0.93153 0.86562 0.90960 0.77624 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.32 8.18 71.98 0.59 -2.73 16 2 C 0.08 1.68 2.92 44.94 0.13 1.81 16 3 H 0.09 1.79 8.02 -2.39 -0.02 1.77 16 4 C -0.10 -1.98 4.18 30.65 0.13 -1.85 16 5 C -0.07 -1.34 1.30 -10.71 -0.01 -1.36 16 6 H 0.07 1.38 6.56 -2.39 -0.02 1.37 16 7 C -0.06 -1.03 0.57 -52.18 -0.03 -1.06 16 8 C -0.14 -1.82 8.12 71.98 0.58 -1.24 16 9 C -0.14 -2.36 8.13 71.98 0.59 -1.78 16 10 C -0.14 -2.74 7.77 71.98 0.56 -2.18 16 11 C -0.10 -2.80 4.67 30.64 0.14 -2.65 16 12 C 0.05 1.72 4.81 86.32 0.42 2.13 16 13 N -0.53 -16.46 4.34 -875.65 -3.80 -20.27 16 14 C 0.05 1.77 4.91 85.56 0.42 2.19 16 15 C 0.45 21.07 7.46 87.66 0.65 21.72 16 16 O -0.60 -34.24 13.90 -3.07 -0.04 -34.28 16 17 N -0.59 -28.76 5.09 -306.98 -1.56 -30.33 16 18 C -0.33 -19.50 10.16 84.04 0.85 -18.64 16 19 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 20 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 21 N -0.94 -57.31 13.96 21.66 0.30 -57.00 16 22 Si 0.97 39.46 27.74 68.60 1.90 41.36 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.23 -8.05 6.52 99.48 0.65 -7.40 16 26 H 0.06 1.11 4.80 -2.39 -0.01 1.10 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 0.99 6.77 -2.39 -0.02 0.97 16 29 H 0.06 1.37 6.32 -2.39 -0.02 1.36 16 30 H 0.09 1.31 6.57 -2.39 -0.02 1.30 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.77 6.49 -2.39 -0.02 0.76 16 34 H 0.05 0.90 6.50 -2.39 -0.02 0.88 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 37 H 0.06 1.09 6.38 -2.39 -0.02 1.08 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.04 0.96 6.38 -2.39 -0.02 0.95 16 40 H 0.05 1.67 6.31 -2.39 -0.02 1.66 16 41 H 0.07 1.68 6.58 -2.38 -0.02 1.67 16 42 H 0.04 1.06 6.19 -2.39 -0.01 1.05 16 43 H 0.05 2.14 5.78 -2.38 -0.01 2.12 16 44 H 0.12 3.14 7.99 -2.39 -0.02 3.12 16 45 H 0.07 2.03 6.95 -2.39 -0.02 2.02 16 46 H 0.39 15.63 5.76 -92.71 -0.53 15.09 16 47 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -74.25 339.36 2.65 -71.60 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: 0.37 Total: 34.97 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 5.49 Total: -6.06 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -5.06 Total: -107.60 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -0.04 Total: -34.28 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 1.90 Total: 41.36 kcal Total: -74.25 2.65 -71.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347594811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.950 kcal (2) G-P(sol) polarization free energy of solvation -74.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds