Wall clock time and date at job start Tue Mar 31 2020 06:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46272 * 2 1 4 4 C 1.53030 * 109.46466 * 119.96643 * 2 1 3 5 5 C 1.53203 * 109.30370 * 179.19801 * 4 2 1 6 6 H 1.08997 * 109.51203 * 62.24423 * 5 4 2 7 7 C 1.52996 * 109.57845 * 182.46080 * 5 4 2 8 8 C 1.52999 * 109.47101 * 179.66204 * 7 5 4 9 9 C 1.52999 * 109.47314 * 299.66146 * 7 5 4 10 10 C 1.53007 * 109.47054 * 59.66428 * 7 5 4 11 11 C 1.53123 * 109.11533 * 302.37368 * 5 4 2 12 12 C 1.53039 * 109.31189 * 57.63615 * 11 5 4 13 13 N 1.46846 * 109.46518 * 240.02379 * 2 1 3 14 14 C 1.46902 * 111.00121 * 54.14314 * 13 2 1 15 15 C 1.50703 * 109.47091 * 58.16143 * 14 13 2 16 16 O 1.21294 * 119.99801 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00040 * 179.97438 * 15 14 13 18 18 C 1.37091 * 119.99972 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00501 * 359.97438 * 18 17 15 20 20 C 1.38964 * 120.00071 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99594 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99933 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47503 * 59.99700 * 22 20 18 24 24 H 1.48502 * 109.46761 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47126 * 299.99471 * 22 20 18 26 26 H 1.09004 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47756 * 299.97565 * 1 2 3 28 28 H 1.09000 * 109.47263 * 59.98208 * 1 2 3 29 29 H 1.08997 * 109.50569 * 299.14470 * 4 2 1 30 30 H 1.09007 * 109.50504 * 59.21648 * 4 2 1 31 31 H 1.08995 * 109.47455 * 60.00097 * 8 7 5 32 32 H 1.09002 * 109.47366 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.47128 * 300.00032 * 8 7 5 34 34 H 1.08998 * 109.46789 * 60.00252 * 9 7 5 35 35 H 1.08997 * 109.46971 * 179.97438 * 9 7 5 36 36 H 1.08995 * 109.47252 * 300.00227 * 9 7 5 37 37 H 1.09002 * 109.46812 * 59.99869 * 10 7 5 38 38 H 1.09002 * 109.46922 * 180.02562 * 10 7 5 39 39 H 1.08995 * 109.46800 * 299.99914 * 10 7 5 40 40 H 1.09002 * 109.50371 * 297.67165 * 11 5 4 41 41 H 1.09003 * 109.50070 * 177.59325 * 11 5 4 42 42 H 1.09000 * 109.46148 * 60.81334 * 12 11 5 43 43 H 1.09002 * 109.46208 * 180.79044 * 12 11 5 44 44 H 1.09000 * 109.47271 * 178.16197 * 14 13 2 45 45 H 1.09002 * 109.46988 * 298.16373 * 14 13 2 46 46 H 0.96998 * 119.99758 * 0.02562 * 17 15 14 47 47 H 0.97001 * 119.99700 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7207 1.2500 5 6 3.5718 -0.7361 1.2362 6 1 3.9464 0.2870 1.2677 7 6 4.0877 -1.5086 2.4518 8 6 5.6174 -1.5296 2.4311 9 6 3.6044 -0.8256 3.7328 10 6 3.5572 -2.9431 2.4073 11 6 4.0548 -1.4186 -0.0466 12 6 3.4865 -0.6776 -1.2590 13 7 2.0193 -0.6918 -1.1993 14 6 1.4373 -0.1107 -2.4166 15 6 1.7791 1.3554 -2.4864 16 8 2.4427 1.8658 -1.6087 17 7 1.3484 2.0991 -3.5246 18 6 1.6598 3.4326 -3.5883 19 1 2.2499 3.8874 -2.8065 20 6 1.2152 4.1996 -4.6585 21 7 0.4967 3.6464 -5.6095 22 14 1.6402 6.0165 -4.7457 23 1 3.1158 6.1788 -4.7766 24 1 1.0521 6.6038 -5.9764 25 1 1.0906 6.7112 -3.5537 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5134 0.8901 28 1 -0.3634 0.5141 -0.8898 29 1 1.6894 -0.1980 2.1399 30 1 1.6653 -1.7444 1.2581 31 1 5.9953 -0.5078 2.4628 32 1 5.9850 -2.0804 3.2970 33 1 5.9617 -2.0162 1.5185 34 1 2.5146 -0.8107 3.7476 35 1 3.9716 -1.3763 4.5988 36 1 3.9822 0.1962 3.7645 37 1 3.9016 -3.4296 1.4947 38 1 3.9244 -3.4933 3.2736 39 1 2.4675 -2.9280 2.4220 40 1 3.7126 -2.4534 -0.0593 41 1 5.1440 -1.3950 -0.0834 42 1 3.8404 0.3534 -1.2531 43 1 3.8175 -1.1699 -2.1735 44 1 1.8414 -0.6200 -3.2914 45 1 0.3541 -0.2305 -2.3944 46 1 0.8180 1.6908 -4.2266 47 1 0.1861 4.1818 -6.3563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347594815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:22 Heat of formation + Delta-G solvation = -54.295858 kcal Electronic energy + Delta-G solvation = -23958.753928 eV Core-core repulsion = 20754.565368 eV Total energy + Delta-G solvation = -3204.188560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.01091 -38.32218 -36.20115 -33.88073 -32.03796 -31.74900 -31.16475 -27.87435 -27.34457 -27.04251 -26.04736 -24.48991 -22.72635 -21.48223 -19.82385 -18.97252 -18.13637 -17.75967 -15.93072 -15.53485 -15.23318 -14.78015 -14.53514 -14.41118 -14.15132 -13.86805 -13.78985 -13.27691 -13.21818 -12.98848 -12.28154 -12.18963 -11.91489 -11.89098 -11.78203 -11.61829 -11.48026 -11.29754 -11.14681 -10.99405 -10.94729 -10.91479 -10.84131 -10.47085 -10.25260 -10.21768 -10.05690 -9.75572 -9.60609 -9.40476 -9.11859 -7.97907 -7.27176 -6.44085 -3.85379 3.16860 3.23348 3.27596 3.85984 4.15544 4.42958 4.74875 4.80098 4.86161 5.07131 5.21867 5.28096 5.34247 5.39237 5.55323 5.58192 5.62801 5.67752 5.75612 5.82888 5.85381 5.92950 5.95813 5.96685 5.99863 6.03709 6.11717 6.13965 6.16260 6.19334 6.23943 6.28258 6.29362 6.36910 6.50134 6.52303 6.59005 6.63200 6.75368 6.99968 7.51827 7.54814 7.66567 8.02948 8.58285 9.14594 9.51564 10.02755 10.72400 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.003929 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.435311 B = 7123.921283 C = 7351.604128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.057 3.943 3 H 0.091 0.909 4 C -0.102 4.102 5 C -0.075 4.075 6 H 0.067 0.933 7 C -0.064 4.064 8 C -0.142 4.142 9 C -0.142 4.142 10 C -0.142 4.142 11 C -0.108 4.108 12 C 0.043 3.957 13 N -0.508 5.508 14 C 0.038 3.962 15 C 0.409 3.591 16 O -0.592 6.592 17 N -0.558 5.558 18 C -0.302 4.302 19 H 0.101 0.899 20 C 0.024 3.976 21 N -0.899 5.899 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.392 0.608 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.648 -11.698 12.065 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.051 4.051 3 H 0.108 0.892 4 C -0.140 4.140 5 C -0.093 4.093 6 H 0.086 0.914 7 C -0.064 4.064 8 C -0.200 4.200 9 C -0.200 4.200 10 C -0.199 4.199 11 C -0.145 4.145 12 C -0.085 4.085 13 N -0.231 5.231 14 C -0.094 4.094 15 C 0.194 3.806 16 O -0.479 6.479 17 N -0.193 5.193 18 C -0.432 4.432 19 H 0.119 0.881 20 C -0.178 4.178 21 N -0.540 5.540 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.199 1.199 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.226 0.774 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.849 -11.768 12.496 17.591 hybrid contribution 0.054 1.576 -0.751 1.747 sum 3.902 -10.192 11.745 16.033 Atomic orbital electron populations 1.21853 0.95615 1.01145 1.01475 1.21970 0.94324 0.99540 0.89231 0.89157 1.21740 0.94694 1.00674 0.96853 1.21188 0.95729 0.99014 0.93383 0.91414 1.20532 0.95144 0.95537 0.95184 1.21915 0.95057 1.01590 1.01388 1.21912 1.01336 1.00214 0.96494 1.21964 1.01241 0.95512 1.01231 1.21688 0.99167 0.99714 0.93966 1.22191 0.87973 1.01072 0.97298 1.62452 1.07260 1.52203 1.01224 1.22098 1.01153 0.92102 0.94076 1.21147 0.85656 0.89270 0.84478 1.90382 1.43994 1.73765 1.39774 1.42059 1.46771 1.09517 1.20995 1.19656 1.31542 0.84373 1.07626 0.88100 1.25271 0.96572 1.00555 0.95392 1.69603 1.35919 1.37344 1.11160 0.85938 0.78841 0.81999 0.77569 1.19924 1.20917 1.19909 0.92830 0.92981 0.92615 0.92234 0.91719 0.92833 0.93239 0.92386 0.92369 0.93244 0.92826 0.92336 0.93493 0.92319 0.91585 0.92154 0.91681 0.92136 0.89766 0.89157 0.77436 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.76 37.15 0.33 -1.90 16 2 C 0.06 0.96 1.95 -67.73 -0.13 0.83 16 3 H 0.09 1.89 5.36 -51.93 -0.28 1.61 16 4 C -0.10 -1.41 3.94 -26.61 -0.10 -1.51 16 5 C -0.07 -0.99 1.62 -90.45 -0.15 -1.13 16 6 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 7 C -0.06 -0.69 0.57 -154.51 -0.09 -0.78 16 8 C -0.14 -1.44 8.12 37.16 0.30 -1.14 16 9 C -0.14 -1.46 8.13 37.16 0.30 -1.15 16 10 C -0.14 -1.43 7.77 37.16 0.29 -1.14 16 11 C -0.11 -1.46 4.66 -26.65 -0.12 -1.58 16 12 C 0.04 0.71 5.10 -3.83 -0.02 0.69 16 13 N -0.51 -8.59 4.69 -228.12 -1.07 -9.66 16 14 C 0.04 0.68 5.30 -4.97 -0.03 0.65 16 15 C 0.41 9.40 7.04 -10.98 -0.08 9.32 16 16 O -0.59 -15.14 11.20 5.55 0.06 -15.07 16 17 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 18 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 19 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 20 C 0.02 0.64 5.50 -17.46 -0.10 0.55 16 21 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 22 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.95 6.24 -51.93 -0.32 0.62 16 29 H 0.06 0.78 6.59 -51.93 -0.34 0.44 16 30 H 0.06 0.86 6.31 -51.92 -0.33 0.53 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.58 6.49 -51.93 -0.34 0.24 16 34 H 0.06 0.60 6.50 -51.93 -0.34 0.26 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.59 6.38 -51.93 -0.33 0.26 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.60 6.38 -51.93 -0.33 0.27 16 40 H 0.07 0.86 6.31 -51.93 -0.33 0.53 16 41 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 42 H 0.07 1.31 6.00 -51.93 -0.31 1.00 16 43 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 44 H 0.08 1.41 8.06 -51.93 -0.42 0.99 16 45 H 0.09 1.52 6.32 -51.93 -0.33 1.20 16 46 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 47 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -28.65 343.35 -7.90 -36.55 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -7.97 Total: 11.56 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 0.26 Total: -6.80 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.40 Total: -47.43 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.06 Total: -15.07 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.65 -7.90 -36.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347594815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.741 kcal (2) G-P(sol) polarization free energy of solvation -28.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds