Wall clock time and date at job start Tue Mar 31 2020 06:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.44915 * 2 1 4 4 C 1.53035 * 109.46669 * 240.02785 * 2 1 3 5 5 C 1.53120 * 109.27928 * 180.80454 * 4 2 1 6 6 H 1.08997 * 109.57390 * 297.71483 * 5 4 2 7 7 C 1.53001 * 109.52086 * 177.55862 * 5 4 2 8 8 C 1.53001 * 109.47002 * 300.31479 * 7 5 4 9 9 C 1.53001 * 109.47313 * 60.31590 * 7 5 4 10 10 C 1.52998 * 109.47087 * 180.31455 * 7 5 4 11 11 C 1.53110 * 109.15837 * 57.65263 * 5 4 2 12 12 C 1.53036 * 109.28310 * 302.34040 * 11 5 4 13 13 N 1.46846 * 109.46408 * 119.96932 * 2 1 3 14 14 C 1.46899 * 110.99960 * 305.86020 * 13 2 1 15 15 C 1.50698 * 109.47365 * 301.83422 * 14 13 2 16 16 O 1.21295 * 119.99790 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00201 * 180.02562 * 15 14 13 18 18 C 1.37094 * 119.99695 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00563 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99824 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99961 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00235 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 59.99469 * 22 20 18 24 24 H 1.48503 * 109.47261 * 299.99650 * 22 20 18 25 25 H 1.48500 * 109.47454 * 179.97438 * 22 20 18 26 26 H 1.08993 * 109.47248 * 300.03075 * 1 2 3 27 27 H 1.09003 * 109.46845 * 60.02712 * 1 2 3 28 28 H 1.09004 * 109.47053 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.50322 * 60.85835 * 4 2 1 30 30 H 1.09002 * 109.53047 * 300.76672 * 4 2 1 31 31 H 1.09002 * 109.47210 * 60.00342 * 8 7 5 32 32 H 1.08998 * 109.47237 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.47345 * 300.00331 * 8 7 5 34 34 H 1.09000 * 109.46796 * 59.99843 * 9 7 5 35 35 H 1.08998 * 109.47069 * 180.02562 * 9 7 5 36 36 H 1.09002 * 109.47172 * 299.99825 * 9 7 5 37 37 H 1.09005 * 109.46775 * 60.00004 * 10 7 5 38 38 H 1.08998 * 109.47096 * 179.97438 * 10 7 5 39 39 H 1.09000 * 109.47284 * 300.00317 * 10 7 5 40 40 H 1.09009 * 109.49948 * 182.40390 * 11 5 4 41 41 H 1.09000 * 109.50973 * 62.29024 * 11 5 4 42 42 H 1.08997 * 109.46100 * 299.17188 * 12 11 5 43 43 H 1.08998 * 109.46746 * 179.19698 * 12 11 5 44 44 H 1.09002 * 109.47043 * 181.83214 * 14 13 2 45 45 H 1.09001 * 109.47354 * 61.83153 * 14 13 2 46 46 H 0.96991 * 119.99747 * 359.97438 * 17 15 14 47 47 H 0.97001 * 119.99677 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0279 0.0000 4 6 2.0400 -0.7208 -1.2499 5 6 3.5711 -0.7359 -1.2355 6 1 3.9467 0.2868 -1.2677 7 6 4.0862 -1.5083 -2.4516 8 6 3.5558 -2.9427 -2.4069 9 6 3.6022 -0.8252 -3.7322 10 6 5.6159 -1.5294 -2.4319 11 6 4.0548 -1.4186 0.0468 12 6 3.4865 -0.6775 1.2592 13 7 2.0193 -0.6916 1.1994 14 6 1.4373 -0.1104 2.4165 15 6 1.7791 1.3556 2.4863 16 8 2.4428 1.8660 1.6087 17 7 1.3482 2.0994 3.5244 18 6 1.6588 3.4332 3.5875 19 1 2.2491 3.8879 2.8056 20 6 1.2151 4.2000 4.6580 21 7 0.4973 3.6467 5.6096 22 14 1.6388 6.0172 4.7444 23 1 1.0875 6.7113 3.5530 24 1 3.1146 6.1806 4.7736 25 1 1.0510 6.6046 5.9751 26 1 -0.3633 0.5143 0.8896 27 1 -0.3633 0.5134 -0.8903 28 1 -0.3633 -1.0277 0.0005 29 1 1.6896 -0.1982 -2.1399 30 1 1.6660 -1.7446 -1.2583 31 1 2.4659 -2.9277 -2.4211 32 1 3.9231 -3.4931 -3.2730 33 1 3.9006 -3.4294 -1.4946 34 1 3.9801 0.1967 -3.7640 35 1 3.9688 -1.3757 -4.5986 36 1 2.5123 -0.8101 -3.7463 37 1 5.9608 -2.0161 -1.5195 38 1 5.9829 -2.0800 -3.2980 39 1 5.9939 -0.5075 -2.4636 40 1 5.1440 -1.3945 0.0833 41 1 3.7126 -2.4534 0.0596 42 1 3.8403 0.3534 1.2532 43 1 3.8175 -1.1697 2.1737 44 1 1.8413 -0.6198 3.2915 45 1 0.3541 -0.2302 2.3943 46 1 0.8179 1.6912 4.2264 47 1 0.2776 2.7029 5.5649 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347594819.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:24 Heat of formation + Delta-G solvation = -53.343075 kcal Electronic energy + Delta-G solvation = -24000.125322 eV Core-core repulsion = 20795.978077 eV Total energy + Delta-G solvation = -3204.147244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.08916 -38.43377 -36.33607 -34.21943 -32.10186 -31.81392 -31.02244 -27.91529 -27.37334 -27.02325 -26.06580 -24.31171 -22.79068 -21.54826 -20.04292 -19.19975 -18.17501 -17.87536 -16.22087 -15.68254 -15.32097 -14.81137 -14.62290 -14.40480 -14.20561 -13.84966 -13.76881 -13.55030 -13.27102 -13.06727 -12.43266 -12.23915 -11.96091 -11.92787 -11.78443 -11.64263 -11.37184 -11.24487 -11.14959 -11.03807 -10.96943 -10.95396 -10.89379 -10.29794 -10.23178 -10.12342 -9.88037 -9.80921 -9.65644 -9.44681 -9.18062 -8.05184 -7.34042 -6.78623 -3.91525 3.27471 3.32367 3.52545 3.79515 4.23966 4.34991 4.70507 4.76341 4.82293 4.89530 5.20458 5.22872 5.29709 5.34057 5.49427 5.53588 5.59305 5.64152 5.71152 5.78024 5.79947 5.86984 5.88071 5.92093 5.94162 5.98274 6.00568 6.04998 6.08758 6.12596 6.15036 6.20789 6.22588 6.31881 6.43498 6.47384 6.53491 6.56809 6.69099 6.92752 7.45647 7.58561 7.77126 8.05514 8.56259 8.77034 9.44651 9.84252 10.64540 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.003946 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.590718 B = 7094.356365 C = 7324.115974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.057 3.943 3 H 0.090 0.910 4 C -0.102 4.102 5 C -0.075 4.075 6 H 0.067 0.933 7 C -0.064 4.064 8 C -0.143 4.143 9 C -0.142 4.142 10 C -0.142 4.142 11 C -0.108 4.108 12 C 0.042 3.958 13 N -0.507 5.507 14 C 0.037 3.963 15 C 0.411 3.589 16 O -0.585 6.585 17 N -0.571 5.571 18 C -0.384 4.384 19 H 0.098 0.902 20 C -0.008 4.008 21 N -0.899 5.899 22 Si 1.090 2.910 23 H -0.284 1.284 24 H -0.284 1.284 25 H -0.279 1.279 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.376 0.624 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.963 -11.899 -12.688 17.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.051 4.051 3 H 0.108 0.892 4 C -0.139 4.139 5 C -0.093 4.093 6 H 0.086 0.914 7 C -0.064 4.064 8 C -0.200 4.200 9 C -0.200 4.200 10 C -0.200 4.200 11 C -0.145 4.145 12 C -0.085 4.085 13 N -0.231 5.231 14 C -0.095 4.095 15 C 0.198 3.802 16 O -0.472 6.472 17 N -0.208 5.208 18 C -0.513 4.513 19 H 0.115 0.885 20 C -0.211 4.211 21 N -0.538 5.538 22 Si 0.916 3.084 23 H -0.210 1.210 24 H -0.210 1.210 25 H -0.204 1.204 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.209 0.791 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.064 -10.655 -12.384 16.835 hybrid contribution 0.091 -0.810 -0.342 0.884 sum 4.155 -11.465 -12.727 17.626 Atomic orbital electron populations 1.21853 0.95599 1.01174 1.01448 1.21980 0.94334 0.99515 0.89250 0.89213 1.21726 0.94738 1.00692 0.96794 1.21175 0.95698 0.99040 0.93412 0.91410 1.20533 0.95173 0.95532 0.95160 1.21963 1.01230 0.95505 1.01260 1.21915 1.01327 1.00229 0.96495 1.21916 0.95026 1.01610 1.01408 1.21685 0.99215 0.99714 0.93905 1.22194 0.87882 1.01078 0.97395 1.62449 1.07328 1.52134 1.01142 1.22104 1.01140 0.91962 0.94255 1.21089 0.85656 0.89176 0.84326 1.90390 1.43592 1.73703 1.39485 1.42145 1.47448 1.09997 1.21166 1.20534 1.35083 0.84794 1.10905 0.88454 1.26506 0.95262 1.07509 0.91827 1.70901 1.35759 1.13779 1.33316 0.83148 0.76397 0.72360 0.76486 1.21027 1.21033 1.20354 0.92775 0.92885 0.92765 0.92155 0.91665 0.92322 0.93447 0.92354 0.92812 0.93200 0.92375 0.92395 0.93195 0.92819 0.92079 0.91537 0.91725 0.92138 0.89819 0.89197 0.79139 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.76 37.16 0.33 -1.89 16 2 C 0.06 0.96 1.95 -67.72 -0.13 0.82 16 3 H 0.09 1.88 5.36 -51.92 -0.28 1.61 16 4 C -0.10 -1.40 3.94 -26.65 -0.11 -1.51 16 5 C -0.07 -0.98 1.62 -90.50 -0.15 -1.13 16 6 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 7 C -0.06 -0.68 0.57 -154.51 -0.09 -0.77 16 8 C -0.14 -1.41 7.77 37.16 0.29 -1.13 16 9 C -0.14 -1.45 8.13 37.16 0.30 -1.15 16 10 C -0.14 -1.43 8.12 37.16 0.30 -1.13 16 11 C -0.11 -1.45 4.66 -26.66 -0.12 -1.57 16 12 C 0.04 0.71 5.10 -3.83 -0.02 0.69 16 13 N -0.51 -8.53 4.69 -228.12 -1.07 -9.61 16 14 C 0.04 0.67 5.30 -4.98 -0.03 0.65 16 15 C 0.41 9.48 7.04 -10.99 -0.08 9.40 16 16 O -0.59 -15.09 11.20 5.54 0.06 -15.02 16 17 N -0.57 -14.25 5.28 -10.96 -0.06 -14.31 16 18 C -0.38 -10.72 9.68 -14.93 -0.14 -10.87 16 19 H 0.10 2.89 7.16 -52.48 -0.38 2.51 16 20 C -0.01 -0.22 5.50 -17.47 -0.10 -0.32 16 21 N -0.90 -25.17 13.68 55.50 0.76 -24.41 16 22 Si 1.09 24.28 29.92 -169.99 -5.09 19.20 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H 0.05 0.92 6.24 -51.93 -0.32 0.59 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.79 6.58 -51.93 -0.34 0.45 16 30 H 0.06 0.86 6.30 -51.93 -0.33 0.53 16 31 H 0.06 0.60 6.37 -51.93 -0.33 0.26 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.59 6.38 -51.93 -0.33 0.26 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.59 6.50 -51.93 -0.34 0.25 16 37 H 0.06 0.58 6.49 -51.93 -0.34 0.24 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.76 6.58 -51.92 -0.34 0.42 16 41 H 0.07 0.86 6.31 -51.93 -0.33 0.53 16 42 H 0.06 1.31 6.00 -51.93 -0.31 1.00 16 43 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 44 H 0.08 1.39 8.06 -51.93 -0.42 0.97 16 45 H 0.09 1.50 6.32 -51.93 -0.33 1.17 16 46 H 0.38 8.75 6.73 -40.82 -0.27 8.48 16 47 H 0.26 7.05 6.77 -40.82 -0.28 6.78 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -30.03 341.62 -7.85 -37.88 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -7.86 Total: 11.02 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 0.26 Total: -9.90 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.37 Total: -48.32 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.06 Total: -15.02 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.09 Total: 19.20 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.03 -7.85 -37.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347594819.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.466 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds