Wall clock time and date at job start Tue Mar 31 2020 06:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 115.55800 * 2 1 4 4 C 1.52999 * 117.49813 * 145.68077 * 2 1 3 5 5 C 1.52989 * 117.49963 * 214.30546 * 2 1 3 6 6 H 1.09008 * 117.50166 * 145.02329 * 5 2 1 7 7 C 1.52995 * 117.52025 * 359.97438 * 5 2 1 8 8 N 1.46903 * 109.47325 * 168.67668 * 7 5 2 9 9 C 1.46893 * 110.99995 * 294.67341 * 8 7 5 10 10 C 1.50700 * 109.47463 * 293.95346 * 9 8 7 11 11 H 1.08005 * 119.99218 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00118 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00217 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99850 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47270 * 59.99541 * 14 12 10 16 16 H 1.48499 * 109.46965 * 180.02562 * 14 12 10 17 17 H 1.48512 * 109.46852 * 299.99772 * 14 12 10 18 18 C 1.46901 * 111.00002 * 58.63051 * 8 7 5 19 19 C 1.53000 * 109.47579 * 75.67007 * 18 8 7 20 20 N 1.46898 * 109.47458 * 177.04245 * 19 18 8 21 21 C 1.47014 * 110.99833 * 293.64154 * 20 19 18 22 22 C 1.53095 * 109.25729 * 177.60820 * 21 20 19 23 23 O 1.43014 * 109.26048 * 56.84339 * 22 21 20 24 24 C 1.43016 * 113.74079 * 301.32796 * 23 22 21 25 25 C 1.47008 * 111.00308 * 170.00201 * 20 19 18 26 26 H 1.08997 * 109.47552 * 205.68941 * 1 2 3 27 27 H 1.09003 * 109.47438 * 325.69428 * 1 2 3 28 28 H 1.09003 * 109.47171 * 85.69328 * 1 2 3 29 29 H 1.08998 * 117.50013 * 0.02562 * 4 2 1 30 30 H 1.09001 * 117.50073 * 214.97985 * 4 2 1 31 31 H 1.09004 * 109.47144 * 288.67698 * 7 5 2 32 32 H 1.08994 * 109.47602 * 48.67918 * 7 5 2 33 33 H 1.08998 * 109.47346 * 53.95459 * 9 8 7 34 34 H 1.09006 * 109.47195 * 173.94960 * 9 8 7 35 35 H 0.96999 * 120.00149 * 179.97438 * 13 12 10 36 36 H 1.09003 * 109.47137 * 195.67332 * 18 8 7 37 37 H 1.09004 * 109.46759 * 315.67318 * 18 8 7 38 38 H 1.08998 * 109.47104 * 297.04635 * 19 18 8 39 39 H 1.08999 * 109.46621 * 57.04065 * 19 18 8 40 40 H 1.09000 * 109.50551 * 297.53435 * 21 20 19 41 41 H 1.09002 * 109.51341 * 57.66874 * 21 20 19 42 42 H 1.09004 * 109.50604 * 296.90790 * 22 21 20 43 43 H 1.09006 * 109.54632 * 176.80348 * 22 21 20 44 44 H 1.08994 * 109.50937 * 298.74322 * 24 23 22 45 45 H 1.08994 * 109.54491 * 178.62254 * 24 23 22 46 46 H 1.09004 * 109.50606 * 302.33415 * 25 20 19 47 47 H 1.09005 * 109.50453 * 62.41317 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1209 0.7652 5 6 2.2364 -1.1210 -0.7648 6 1 3.1716 -0.8752 -1.2681 7 6 1.3593 -2.1568 -1.4708 8 7 2.1911 -2.9781 -2.3605 9 6 2.7510 -2.1702 -3.4521 10 6 1.6359 -1.6908 -4.3453 11 1 0.6135 -1.9600 -4.1243 12 6 1.9209 -0.9097 -5.4451 13 7 3.1659 -0.5825 -5.7145 14 14 0.5386 -0.3150 -6.5519 15 1 -0.4083 0.5111 -5.7607 16 1 1.1047 0.5006 -7.6562 17 1 -0.1795 -1.4847 -7.1190 18 6 3.2551 -3.6567 -1.6086 19 6 2.6601 -4.8324 -0.8310 20 7 3.7344 -5.5535 -0.1356 21 6 4.6416 -6.2002 -1.0948 22 6 5.7765 -6.8881 -0.3315 23 8 5.2213 -7.8193 0.6011 24 6 4.3334 -7.2232 1.5507 25 6 3.1838 -6.5387 0.8064 26 1 -0.3634 -0.9260 0.4455 27 1 -0.3634 0.8489 0.5792 28 1 -0.3634 0.0772 -1.0248 29 1 1.6112 -1.8585 1.2682 30 1 3.1715 -0.8750 1.2684 31 1 0.8817 -2.7956 -0.7278 32 1 0.5947 -1.6468 -2.0568 33 1 3.2774 -1.3115 -3.0355 34 1 3.4467 -2.7761 -4.0327 35 1 3.3665 -0.0333 -6.4884 36 1 4.0116 -4.0250 -2.3015 37 1 3.7120 -2.9542 -0.9115 38 1 1.9415 -4.4591 -0.1014 39 1 2.1575 -5.5083 -1.5229 40 1 4.0908 -6.9416 -1.6737 41 1 5.0575 -5.4489 -1.7661 42 1 6.3602 -6.1400 0.2049 43 1 6.4206 -7.4169 -1.0342 44 1 4.8750 -6.4847 2.1417 45 1 3.9329 -7.9938 2.2092 46 1 2.5354 -6.0344 1.5229 47 1 2.6090 -7.2850 0.2579 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351323868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:29 Heat of formation + Delta-G solvation = -13.035172 kcal Electronic energy + Delta-G solvation = -23324.293437 eV Core-core repulsion = 20121.894074 eV Total energy + Delta-G solvation = -3202.399363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.60550 -38.46668 -36.28359 -35.02504 -32.52464 -31.26560 -29.67447 -28.28625 -27.07397 -26.49128 -24.39689 -24.05698 -21.84363 -21.50168 -20.49417 -20.30597 -18.35596 -16.61131 -16.25237 -16.17619 -15.83378 -15.26638 -15.10029 -14.79330 -14.60952 -14.18427 -14.10234 -13.49591 -13.20415 -12.95059 -12.66535 -12.35597 -12.26445 -11.87263 -11.85686 -11.52069 -11.42050 -11.38022 -11.23164 -10.98240 -10.89582 -10.72230 -10.62682 -10.49141 -10.26990 -9.84808 -9.72076 -9.45643 -9.29063 -9.06321 -8.42224 -8.31832 -7.19562 -6.01410 -4.02021 3.33547 3.37772 3.40372 3.69676 3.86322 4.18540 4.44231 4.81018 4.95186 4.99271 5.05261 5.08924 5.11938 5.24033 5.29681 5.34752 5.35656 5.43581 5.49946 5.57412 5.63600 5.70584 5.72499 5.85355 5.91032 5.94839 6.02445 6.07086 6.10856 6.12434 6.29366 6.34119 6.40543 6.48356 6.52200 6.62160 6.89880 6.97591 7.04883 7.09735 7.33027 7.40140 7.81231 8.10894 8.22502 8.56922 9.04607 9.61699 11.09415 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.004509 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.903767 B = 6208.327625 C = 7483.367940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.154 4.154 3 H 0.095 0.905 4 C -0.182 4.182 5 C -0.164 4.164 6 H 0.105 0.895 7 C 0.098 3.902 8 N -0.534 5.534 9 C 0.193 3.807 10 C -0.504 4.504 11 H 0.061 0.939 12 C 0.057 3.943 13 N -0.899 5.899 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.057 3.943 19 C 0.065 3.935 20 N -0.537 5.537 21 C 0.014 3.986 22 C 0.064 3.936 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.019 3.981 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.086 0.914 33 H -0.003 1.003 34 H 0.026 0.974 35 H 0.261 0.739 36 H 0.062 0.938 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.043 0.957 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.811 -7.865 14.334 16.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.173 4.173 3 H 0.113 0.887 4 C -0.219 4.219 5 C -0.184 4.184 6 H 0.123 0.877 7 C -0.031 4.031 8 N -0.257 5.257 9 C 0.068 3.932 10 C -0.542 4.542 11 H 0.079 0.921 12 C -0.144 4.144 13 N -0.539 5.539 14 Si 0.723 3.277 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.072 4.072 19 C -0.063 4.063 20 N -0.263 5.263 21 C -0.114 4.114 22 C -0.013 4.013 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.110 4.110 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.015 0.985 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.076 0.924 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.933 -7.994 14.231 16.349 hybrid contribution -0.619 0.854 -0.815 1.333 sum 0.314 -7.140 13.416 15.201 Atomic orbital electron populations 1.21294 0.93236 1.00986 1.02061 1.22232 0.95177 0.94280 1.05606 0.88711 1.23090 1.01859 1.01735 0.95182 1.23185 1.02341 1.00235 0.92594 0.87740 1.21677 0.95738 0.91674 0.94013 1.62253 1.21502 1.31526 1.10417 1.19743 0.95217 0.90907 0.87306 1.21088 0.93665 1.30367 1.09116 0.92075 1.24949 0.95496 0.96312 0.97685 1.69941 1.17775 1.37932 1.28230 0.86611 0.82182 0.78755 0.80158 1.20289 1.21412 1.20237 1.21982 0.94092 0.94975 0.96110 1.22074 0.92077 0.95608 0.96512 1.62160 1.19319 1.26424 1.18373 1.22836 0.95273 0.98301 0.94966 1.22686 0.94660 0.92296 0.91637 1.87954 1.62669 1.35052 1.45123 1.22639 0.90304 0.97392 0.90889 1.22741 0.97182 0.94494 0.96543 0.92863 0.93001 0.91721 0.89480 0.89878 0.92950 0.89622 0.98492 0.95573 0.92945 0.91947 0.94109 0.91148 0.94140 0.93919 0.89014 0.92330 0.88576 0.92392 0.88779 0.89853 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.15 37.16 0.34 -1.30 16 2 C -0.15 -2.37 6.41 -90.63 -0.58 -2.95 16 3 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 4 C -0.18 -2.63 9.82 -26.73 -0.26 -2.89 16 5 C -0.16 -2.88 3.94 -90.63 -0.36 -3.23 16 6 H 0.10 2.12 6.18 -51.92 -0.32 1.80 16 7 C 0.10 1.83 4.53 -3.82 -0.02 1.81 16 8 N -0.53 -11.10 4.63 -236.07 -1.09 -12.19 16 9 C 0.19 4.89 4.54 -4.98 -0.02 4.87 16 10 C -0.50 -13.86 8.44 -34.44 -0.29 -14.15 16 11 H 0.06 1.67 7.14 -52.48 -0.37 1.29 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 14 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 18 C 0.06 1.02 4.85 -3.82 -0.02 1.00 16 19 C 0.07 0.98 5.01 -3.83 -0.02 0.96 16 20 N -0.54 -7.20 4.73 -234.31 -1.11 -8.31 16 21 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 22 C 0.06 0.72 7.01 37.21 0.26 0.98 16 23 O -0.39 -4.82 10.83 -35.23 -0.38 -5.20 16 24 C 0.06 0.67 7.01 37.21 0.26 0.93 16 25 C 0.02 0.21 5.64 -3.71 -0.02 0.19 16 26 H 0.05 0.68 7.90 -51.93 -0.41 0.27 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.97 7.67 -51.93 -0.40 0.58 16 29 H 0.09 1.18 7.94 -51.93 -0.41 0.76 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.88 6.72 -51.93 -0.35 0.53 16 32 H 0.09 1.78 6.03 -51.93 -0.31 1.47 16 33 H 0.00 -0.07 6.18 -51.93 -0.32 -0.39 16 34 H 0.03 0.72 7.83 -51.93 -0.41 0.31 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.06 1.15 5.98 -51.93 -0.31 0.84 16 37 H 0.04 0.74 6.44 -51.93 -0.33 0.40 16 38 H 0.07 1.04 6.96 -51.93 -0.36 0.67 16 39 H 0.04 0.66 8.12 -51.93 -0.42 0.23 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.22 6.33 -51.93 -0.33 0.89 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 47 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 358.66 15.07 5.40 5.40 Total: -1.00 -29.31 358.66 -10.73 -40.04 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -8.42 Total: 1.60 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -0.85 Total: -12.11 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -1.46 Total: -46.22 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.38 Total: -5.20 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.31 -10.73 -40.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351323868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.006 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds