Wall clock time and date at job start Tue Mar 31 2020 06:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 115.55329 * 2 1 4 4 C 1.52995 * 117.51797 * 214.29332 * 2 1 3 5 5 C 1.52996 * 60.00380 * 252.51825 * 4 2 1 6 6 H 1.09005 * 117.49347 * 107.48519 * 5 4 2 7 7 C 1.53003 * 117.50336 * 252.50803 * 5 4 2 8 8 N 1.46897 * 109.47113 * 243.62432 * 7 5 4 9 9 C 1.46897 * 110.99741 * 293.95282 * 8 7 5 10 10 C 1.50704 * 109.46917 * 163.87862 * 9 8 7 11 11 H 1.08000 * 120.00073 * 354.87666 * 10 9 8 12 12 C 1.37880 * 120.00105 * 174.88249 * 10 9 8 13 13 N 1.31510 * 120.00231 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99780 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47061 * 90.00202 * 14 12 10 16 16 H 1.48496 * 109.47174 * 210.00293 * 14 12 10 17 17 H 1.48497 * 109.47386 * 330.00228 * 14 12 10 18 18 C 1.46896 * 110.99955 * 170.00124 * 8 7 5 19 19 C 1.53006 * 109.46737 * 283.18432 * 18 8 7 20 20 N 1.46903 * 109.46955 * 184.18772 * 19 18 8 21 21 C 1.47015 * 110.99806 * 293.63470 * 20 19 18 22 22 C 1.53102 * 109.25591 * 177.60865 * 21 20 19 23 23 O 1.43012 * 109.26149 * 56.84572 * 22 21 20 24 24 C 1.43020 * 113.73818 * 301.33289 * 23 22 21 25 25 C 1.47016 * 111.00160 * 169.99842 * 20 19 18 26 26 H 1.09008 * 109.47120 * 274.33027 * 1 2 3 27 27 H 1.09004 * 109.47081 * 34.33133 * 1 2 3 28 28 H 1.08996 * 109.47076 * 154.33404 * 1 2 3 29 29 H 1.09010 * 117.49866 * 145.03286 * 4 2 1 30 30 H 1.08996 * 117.50001 * 0.02562 * 4 2 1 31 31 H 1.08997 * 109.46517 * 3.62111 * 7 5 4 32 32 H 1.08997 * 109.46725 * 123.62048 * 7 5 4 33 33 H 1.09001 * 109.47420 * 283.87146 * 9 8 7 34 34 H 1.08994 * 109.47404 * 43.87958 * 9 8 7 35 35 H 0.96999 * 120.00179 * 179.97438 * 13 12 10 36 36 H 1.09003 * 109.47323 * 43.17388 * 18 8 7 37 37 H 1.08991 * 109.47282 * 163.18405 * 18 8 7 38 38 H 1.08997 * 109.47149 * 304.18297 * 19 18 8 39 39 H 1.08998 * 109.47692 * 64.18964 * 19 18 8 40 40 H 1.08996 * 109.50756 * 297.54091 * 21 20 19 41 41 H 1.08993 * 109.50902 * 57.67529 * 21 20 19 42 42 H 1.09000 * 109.50540 * 296.91236 * 22 21 20 43 43 H 1.09005 * 109.54201 * 176.80604 * 22 21 20 44 44 H 1.08997 * 109.50405 * 298.72924 * 24 23 22 45 45 H 1.09001 * 109.53925 * 178.62303 * 24 23 22 46 46 H 1.09000 * 109.50168 * 302.32692 * 25 20 19 47 47 H 1.08995 * 109.50506 * 62.41411 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2368 -1.1210 -0.7645 5 6 2.2364 -1.1207 0.7655 6 1 1.6111 -1.8582 1.2687 7 6 3.5487 -0.7753 1.4723 8 7 4.0094 -1.9369 2.2445 9 6 3.0864 -2.2354 3.3476 10 6 3.3527 -3.6263 3.8630 11 1 4.0720 -4.2586 3.3638 12 6 2.6781 -4.0915 4.9718 13 7 2.9101 -5.3055 5.4213 14 14 1.4344 -2.9976 5.8355 15 1 0.0912 -3.2075 5.2379 16 1 1.3926 -3.3401 7.2798 17 1 1.8306 -1.5754 5.6754 18 6 5.3756 -1.7295 2.7428 19 6 6.3721 -1.9364 1.6003 20 7 7.7419 -1.8279 2.1197 21 6 8.0247 -0.4600 2.5781 22 6 9.4379 -0.4061 3.1647 23 8 10.3746 -0.8517 2.1803 24 6 10.1292 -2.1806 1.7119 25 6 8.7232 -2.2524 1.1105 26 1 -0.3634 0.0776 1.0248 27 1 -0.3633 0.8487 -0.5796 28 1 -0.3633 -0.9262 -0.4451 29 1 3.1721 -0.8751 -1.2676 30 1 1.6119 -1.8585 -1.2680 31 1 4.3020 -0.5102 0.7305 32 1 3.3883 0.0675 2.1446 33 1 3.2363 -1.5151 4.1518 34 1 2.0591 -2.1713 2.9891 35 1 2.4357 -5.6327 6.2016 36 1 5.4714 -0.7146 3.1290 37 1 5.5838 -2.4428 3.5401 38 1 6.2258 -2.9250 1.1652 39 1 6.2120 -1.1758 0.8362 40 1 7.9538 0.2281 1.7358 41 1 7.3021 -0.1758 3.3430 42 1 9.4937 -1.0537 4.0397 43 1 9.6736 0.6180 3.4543 44 1 10.2052 -2.8797 2.5446 45 1 10.8645 -2.4403 0.9503 46 1 8.5102 -3.2766 0.8042 47 1 8.6629 -1.5934 0.2445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351323869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:31 Heat of formation + Delta-G solvation = -10.180763 kcal Electronic energy + Delta-G solvation = -23035.969187 eV Core-core repulsion = 19833.693601 eV Total energy + Delta-G solvation = -3202.275586 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.55442 -38.29216 -36.55191 -35.16296 -32.45214 -31.22805 -29.86382 -29.07192 -27.54084 -26.24553 -24.17000 -24.00000 -21.86777 -21.17544 -20.36662 -20.08225 -19.39596 -16.91068 -16.54723 -16.13855 -15.35372 -15.17211 -15.06943 -14.89161 -14.68342 -14.26492 -13.95121 -13.68073 -13.27482 -13.07464 -12.81545 -12.57892 -12.40280 -12.25071 -11.98586 -11.92872 -11.68386 -11.41057 -11.26902 -10.98205 -10.93979 -10.68582 -10.53335 -10.28562 -10.22336 -9.90575 -9.67238 -9.59841 -9.45415 -9.26885 -8.54312 -8.26346 -7.36807 -6.02848 -3.99404 3.28208 3.36011 3.37638 3.72092 3.87313 3.99879 4.43009 4.65565 4.86490 4.98550 5.02485 5.07652 5.11528 5.13217 5.22471 5.27435 5.29535 5.42831 5.46981 5.53278 5.59110 5.70983 5.75660 5.77868 5.82353 5.84105 5.88012 5.95197 5.96894 6.02404 6.03662 6.08116 6.12809 6.39885 6.41279 6.58576 6.65533 6.91340 6.96183 7.02405 7.13387 7.16590 7.64777 7.90489 8.05863 8.68508 9.08662 9.59264 11.10415 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010916 B = 0.005222 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.449055 B = 5360.298399 C = 7256.080960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.164 4.164 3 H 0.097 0.903 4 C -0.171 4.171 5 C -0.133 4.133 6 H 0.115 0.885 7 C 0.085 3.915 8 N -0.523 5.523 9 C 0.161 3.839 10 C -0.504 4.504 11 H 0.082 0.918 12 C 0.069 3.931 13 N -0.900 5.900 14 Si 0.870 3.130 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.068 3.932 19 C 0.066 3.934 20 N -0.534 5.534 21 C 0.016 3.984 22 C 0.064 3.936 23 O -0.390 6.390 24 C 0.064 3.936 25 C 0.020 3.980 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.024 0.976 33 H -0.011 1.011 34 H 0.027 0.973 35 H 0.263 0.737 36 H 0.017 0.983 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.024 0.976 40 H 0.037 0.963 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.886 11.106 -9.512 16.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.183 4.183 3 H 0.115 0.885 4 C -0.208 4.208 5 C -0.151 4.151 6 H 0.133 0.867 7 C -0.044 4.044 8 N -0.248 5.248 9 C 0.035 3.965 10 C -0.543 4.543 11 H 0.100 0.900 12 C -0.133 4.133 13 N -0.539 5.539 14 Si 0.697 3.303 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.193 1.193 18 C -0.060 4.060 19 C -0.062 4.062 20 N -0.260 5.260 21 C -0.113 4.113 22 C -0.013 4.013 23 O -0.309 6.309 24 C -0.013 4.013 25 C -0.108 4.108 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.007 0.993 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.043 0.957 40 H 0.055 0.945 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.079 0.921 45 H 0.113 0.887 46 H 0.106 0.894 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.028 10.363 -9.335 15.618 hybrid contribution -1.135 1.552 0.434 1.971 sum 5.893 11.915 -8.901 15.997 Atomic orbital electron populations 1.21331 0.93179 1.01520 1.01708 1.22372 0.95052 0.94518 1.06377 0.88522 1.23091 1.01901 1.00819 0.94980 1.22508 0.98630 1.00636 0.93344 0.86701 1.21650 0.94250 0.92159 0.96323 1.61759 1.01881 1.34905 1.26209 1.20249 0.91857 0.97085 0.87350 1.21039 1.24363 0.97353 1.11516 0.90028 1.24887 0.96685 0.94862 0.96829 1.69891 1.42680 1.16510 1.24838 0.86942 0.82437 0.81638 0.79233 1.20209 1.21235 1.19282 1.21935 0.87829 0.99355 0.96914 1.22120 0.86019 1.01688 0.96334 1.62113 1.03084 1.22874 1.37885 1.22821 0.98172 0.89863 1.00396 1.22673 0.87413 1.00213 0.91040 1.87939 1.52689 1.31325 1.58939 1.22666 0.95342 0.84326 0.98997 1.22747 0.92892 1.01697 0.93510 0.92332 0.92677 0.92557 0.89415 0.89159 0.92030 0.95757 0.99302 0.95499 0.92741 0.96450 0.88356 0.89655 0.95738 0.94458 0.89300 0.92050 0.88758 0.92076 0.88715 0.89440 0.94404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 10.19 37.15 0.38 -1.04 16 2 C -0.16 -2.16 6.13 -90.62 -0.56 -2.72 16 3 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 4 C -0.17 -2.31 9.82 -26.74 -0.26 -2.57 16 5 C -0.13 -2.14 5.31 -90.62 -0.48 -2.62 16 6 H 0.12 2.13 6.40 -51.93 -0.33 1.79 16 7 C 0.08 1.43 5.06 -3.82 -0.02 1.42 16 8 N -0.52 -10.61 4.37 -236.08 -1.03 -11.65 16 9 C 0.16 3.82 3.66 -4.98 -0.02 3.80 16 10 C -0.50 -14.13 8.86 -34.44 -0.31 -14.44 16 11 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 12 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 14 Si 0.87 21.38 27.57 -169.99 -4.69 16.69 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 17 H -0.27 -6.37 6.40 56.52 0.36 -6.01 16 18 C 0.07 1.27 4.66 -3.82 -0.02 1.25 16 19 C 0.07 1.05 5.02 -3.82 -0.02 1.03 16 20 N -0.53 -7.76 4.73 -234.31 -1.11 -8.87 16 21 C 0.02 0.20 5.44 -3.71 -0.02 0.18 16 22 C 0.06 0.74 7.01 37.21 0.26 1.01 16 23 O -0.39 -5.03 10.83 -35.23 -0.38 -5.41 16 24 C 0.06 0.72 7.01 37.21 0.26 0.98 16 25 C 0.02 0.25 5.65 -3.71 -0.02 0.23 16 26 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.65 7.90 -51.93 -0.41 0.24 16 29 H 0.09 1.11 8.03 -51.92 -0.42 0.69 16 30 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 31 H 0.06 0.95 6.50 -51.93 -0.34 0.61 16 32 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 33 H -0.01 -0.26 6.75 -51.93 -0.35 -0.61 16 34 H 0.03 0.64 5.70 -51.93 -0.30 0.35 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.02 0.31 6.56 -51.93 -0.34 -0.03 16 37 H 0.10 2.16 7.12 -51.93 -0.37 1.79 16 38 H 0.09 1.45 8.04 -51.93 -0.42 1.04 16 39 H 0.02 0.37 6.95 -51.93 -0.36 0.01 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 1.17 6.47 -51.93 -0.34 0.83 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 47 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -30.33 361.65 -10.53 -40.86 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -8.63 Total: 1.23 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -0.92 Total: -11.61 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -1.37 Total: -47.21 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.38 Total: -5.41 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.69 Total: 16.69 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.33 -10.53 -40.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351323869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.682 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds