Wall clock time and date at job start Tue Mar 31 2020 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 115.55210 * 2 1 4 4 C 1.53075 * 117.51282 * 145.72461 * 2 1 3 5 5 C 1.52995 * 117.49763 * 214.33297 * 2 1 3 6 6 H 1.08997 * 117.49800 * 359.97438 * 5 2 1 7 7 C 1.53005 * 117.50082 * 144.99570 * 5 2 1 8 8 N 1.46903 * 109.47284 * 185.94902 * 7 5 2 9 9 C 1.46892 * 110.99821 * 295.84717 * 8 7 5 10 10 C 1.50697 * 109.47243 * 293.98894 * 9 8 7 11 11 H 1.07997 * 120.00367 * 4.86162 * 10 9 8 12 12 C 1.37885 * 120.00267 * 184.86228 * 10 9 8 13 13 N 1.31513 * 119.99439 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99992 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47174 * 90.00069 * 14 12 10 16 16 H 1.48502 * 109.46783 * 209.99862 * 14 12 10 17 17 H 1.48493 * 109.47367 * 329.99542 * 14 12 10 18 18 C 1.46894 * 110.99726 * 171.88791 * 8 7 5 19 19 C 1.52996 * 109.47023 * 189.99926 * 18 8 7 20 20 N 1.46898 * 109.47401 * 180.02562 * 19 18 8 21 21 C 1.47020 * 111.00010 * 293.64061 * 20 19 18 22 22 C 1.53100 * 109.25691 * 177.60643 * 21 20 19 23 23 O 1.43020 * 109.25892 * 56.84823 * 22 21 20 24 24 C 1.43017 * 113.73495 * 301.32601 * 23 22 21 25 25 C 1.47018 * 111.00412 * 170.00372 * 20 19 18 26 26 H 1.08996 * 109.47184 * 205.66946 * 1 2 3 27 27 H 1.09008 * 109.46899 * 325.66902 * 1 2 3 28 28 H 1.08998 * 109.47150 * 85.66077 * 1 2 3 29 29 H 1.08996 * 117.49406 * 359.97438 * 4 2 1 30 30 H 1.08997 * 117.51054 * 214.95004 * 4 2 1 31 31 H 1.09007 * 109.46909 * 65.95227 * 7 5 2 32 32 H 1.09003 * 109.47085 * 305.95288 * 7 5 2 33 33 H 1.09000 * 109.47564 * 53.99634 * 9 8 7 34 34 H 1.09004 * 109.46778 * 173.99350 * 9 8 7 35 35 H 0.96999 * 119.99767 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.46704 * 70.00763 * 18 8 7 37 37 H 1.08996 * 109.47968 * 310.00236 * 18 8 7 38 38 H 1.08997 * 109.47363 * 60.00586 * 19 18 8 39 39 H 1.08997 * 109.47373 * 300.00514 * 19 18 8 40 40 H 1.09003 * 109.50049 * 297.53991 * 21 20 19 41 41 H 1.08991 * 109.50600 * 57.66598 * 21 20 19 42 42 H 1.08998 * 109.50746 * 296.91346 * 22 21 20 43 43 H 1.08995 * 109.50239 * 176.78195 * 22 21 20 44 44 H 1.08997 * 109.50506 * 298.73780 * 24 23 22 45 45 H 1.08996 * 109.50102 * 178.60739 * 24 23 22 46 46 H 1.09005 * 109.50497 * 302.32748 * 25 20 19 47 47 H 1.08995 * 109.50856 * 62.45507 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2371 -1.1219 0.7646 5 6 2.2364 -1.1207 -0.7654 6 1 1.6111 -1.8582 -1.2686 7 6 3.5487 -0.7753 -1.4723 8 7 3.9976 -1.9292 -2.2627 9 6 4.3133 -3.0712 -1.3944 10 6 5.5070 -2.7362 -0.5379 11 1 5.9352 -1.7453 -0.5721 12 6 6.0527 -3.6947 0.2896 13 7 5.5310 -4.9012 0.3317 14 14 7.5319 -3.2791 1.3519 15 1 7.0690 -2.7645 2.6656 16 1 8.3510 -4.5003 1.5593 17 1 8.3518 -2.2423 0.6751 18 6 5.1474 -1.5748 -3.1054 19 6 5.4292 -2.7126 -4.0886 20 7 6.5794 -2.3585 -4.9309 21 6 6.2615 -1.2201 -5.8052 22 6 7.5028 -0.8473 -6.6202 23 8 7.9433 -1.9904 -7.3583 24 6 8.2622 -3.1175 -6.5377 25 6 7.0286 -3.5134 -5.7220 26 1 -0.3633 -0.9262 0.4451 27 1 -0.3633 0.8487 0.5796 28 1 -0.3633 0.0778 -1.0247 29 1 1.6120 -1.8595 1.2678 30 1 3.1724 -0.8765 1.2675 31 1 4.3068 -0.5265 -0.7296 32 1 3.3923 0.0783 -2.1319 33 1 3.4575 -3.2896 -0.7557 34 1 4.5400 -3.9428 -2.0086 35 1 5.9146 -5.5754 0.9141 36 1 6.0228 -1.4133 -2.4762 37 1 4.9248 -0.6628 -3.6592 38 1 4.5539 -2.8742 -4.7177 39 1 5.6519 -3.6246 -3.5348 40 1 5.4516 -1.4952 -6.4808 41 1 5.9559 -0.3686 -5.1974 42 1 8.2956 -0.5210 -5.9472 43 1 7.2560 -0.0411 -7.3109 44 1 9.0771 -2.8571 -5.8623 45 1 8.5647 -3.9531 -7.1688 46 1 7.2830 -4.3358 -5.0533 47 1 6.2310 -3.8251 -6.3962 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351323870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:34 Heat of formation + Delta-G solvation = -15.052603 kcal Electronic energy + Delta-G solvation = -23244.348403 eV Core-core repulsion = 20041.861558 eV Total energy + Delta-G solvation = -3202.486845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.42674 -38.07639 -36.42851 -34.98107 -32.38679 -31.12064 -29.75596 -28.34579 -27.07738 -26.00848 -24.16010 -23.79980 -22.58637 -20.66614 -20.23905 -19.67563 -19.33625 -16.49802 -16.34327 -16.00833 -15.27743 -15.04219 -14.94705 -14.68031 -14.38609 -14.29127 -14.02770 -13.42280 -13.15942 -12.86162 -12.72496 -12.36219 -12.14381 -11.95425 -11.64939 -11.37660 -11.33646 -11.26621 -11.10743 -10.91756 -10.81801 -10.61854 -10.49201 -10.19892 -10.00574 -9.90895 -9.60367 -9.56394 -9.33326 -9.10197 -8.38568 -8.09681 -7.16091 -5.99846 -4.06914 3.27939 3.35286 3.38606 3.83975 4.02300 4.28430 4.42985 4.91002 4.99985 5.13368 5.16271 5.24042 5.29581 5.31877 5.37008 5.40139 5.53792 5.59724 5.64777 5.66051 5.77502 5.88853 5.94746 5.94820 6.03570 6.04263 6.09932 6.16111 6.20919 6.24346 6.30789 6.46204 6.54915 6.59656 6.69947 6.86709 6.95270 7.12919 7.24156 7.30497 7.36461 7.57634 7.93613 8.09404 8.31798 8.32788 9.01862 9.58642 11.05346 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011898 B = 0.005295 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.833083 B = 5286.640469 C = 7044.534430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.170 4.170 3 H 0.095 0.905 4 C -0.164 4.164 5 C -0.120 4.120 6 H 0.103 0.897 7 C 0.095 3.905 8 N -0.543 5.543 9 C 0.186 3.814 10 C -0.538 4.538 11 H 0.054 0.946 12 C 0.067 3.933 13 N -0.891 5.891 14 Si 0.883 3.117 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.069 3.931 19 C 0.067 3.933 20 N -0.535 5.535 21 C 0.016 3.984 22 C 0.064 3.936 23 O -0.391 6.391 24 C 0.064 3.936 25 C 0.020 3.980 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.032 0.968 34 H 0.032 0.968 35 H 0.261 0.739 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.031 0.969 39 H 0.088 0.912 40 H 0.038 0.962 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.667 7.192 -8.958 11.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.189 4.189 3 H 0.113 0.887 4 C -0.201 4.201 5 C -0.139 4.139 6 H 0.121 0.879 7 C -0.034 4.034 8 N -0.267 5.267 9 C 0.060 3.940 10 C -0.577 4.577 11 H 0.072 0.928 12 C -0.135 4.135 13 N -0.530 5.530 14 Si 0.711 3.289 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.060 4.060 19 C -0.060 4.060 20 N -0.260 5.260 21 C -0.112 4.112 22 C -0.013 4.013 23 O -0.309 6.309 24 C -0.012 4.012 25 C -0.109 4.109 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.106 0.894 40 H 0.057 0.943 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.077 0.923 45 H 0.112 0.888 46 H 0.106 0.894 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.635 6.999 -9.081 11.581 hybrid contribution 0.848 0.029 1.148 1.428 sum -0.787 7.028 -7.932 10.627 Atomic orbital electron populations 1.21304 0.93569 1.01314 1.01219 1.22400 0.94583 0.94693 1.07227 0.88672 1.23095 1.01924 0.99898 0.95190 1.22222 0.98336 0.99811 0.93507 0.87907 1.21424 0.93895 0.92692 0.95378 1.62471 1.33239 1.07118 1.23904 1.19775 0.95347 0.88098 0.90731 1.21638 1.14513 0.97494 1.24077 0.92757 1.24892 0.96827 0.94961 0.96855 1.69938 1.41050 1.03202 1.38848 0.86732 0.83266 0.77908 0.80963 1.20798 1.21246 1.19976 1.21773 0.94195 0.95322 0.94663 1.22056 0.89456 1.00281 0.94239 1.62131 1.36524 1.05863 1.21512 1.22806 0.97082 0.95870 0.95460 1.22666 0.95582 0.88124 0.94938 1.87933 1.86515 1.22462 1.34037 1.22666 0.96180 0.88744 0.93660 1.22735 0.97424 0.94255 0.96448 0.92797 0.92895 0.92655 0.89561 0.88853 0.94033 0.93028 0.94998 0.95042 0.92975 0.92761 0.93636 0.95082 0.89405 0.94332 0.89474 0.92357 0.88882 0.92267 0.88766 0.89398 0.94320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 10.19 37.16 0.38 -1.07 16 2 C -0.17 -2.51 6.13 -90.58 -0.56 -3.07 16 3 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.16 -2.84 9.83 -26.69 -0.26 -3.10 16 5 C -0.12 -2.12 4.33 -90.62 -0.39 -2.51 16 6 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 7 C 0.09 1.79 5.07 -3.82 -0.02 1.77 16 8 N -0.54 -11.26 4.73 -236.08 -1.12 -12.38 16 9 C 0.19 4.59 4.68 -4.98 -0.02 4.57 16 10 C -0.54 -14.28 7.44 -34.44 -0.26 -14.54 16 11 H 0.05 1.46 5.89 -52.49 -0.31 1.15 16 12 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 13 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 14 Si 0.88 21.35 29.54 -169.99 -5.02 16.33 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.07 1.33 4.66 -3.83 -0.02 1.31 16 19 C 0.07 1.22 4.88 -3.83 -0.02 1.20 16 20 N -0.53 -8.58 4.73 -234.31 -1.11 -9.69 16 21 C 0.02 0.22 5.44 -3.71 -0.02 0.20 16 22 C 0.06 0.78 7.01 37.21 0.26 1.04 16 23 O -0.39 -5.37 10.83 -35.23 -0.38 -5.75 16 24 C 0.06 0.81 7.01 37.21 0.26 1.07 16 25 C 0.02 0.28 5.64 -3.71 -0.02 0.26 16 26 H 0.05 0.67 7.90 -51.93 -0.41 0.26 16 27 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.46 8.05 -51.93 -0.42 1.04 16 30 H 0.09 1.74 8.03 -51.93 -0.42 1.32 16 31 H 0.04 0.87 6.39 -51.92 -0.33 0.54 16 32 H 0.05 0.88 7.97 -51.93 -0.41 0.47 16 33 H 0.03 0.85 7.03 -51.93 -0.37 0.48 16 34 H 0.03 0.84 6.57 -51.93 -0.34 0.50 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.05 1.19 6.25 -51.93 -0.32 0.87 16 37 H 0.05 0.78 6.33 -51.93 -0.33 0.45 16 38 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 39 H 0.09 1.84 6.49 -51.93 -0.34 1.50 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 1.15 6.38 -51.93 -0.33 0.82 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.09 1.26 8.09 -51.93 -0.42 0.84 16 47 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -28.58 361.41 -10.76 -39.34 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.53 Total: 2.79 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -0.78 Total: -11.12 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -1.49 Total: -47.04 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.38 Total: -5.75 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.58 -10.76 -39.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351323870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.288 kcal (2) G-P(sol) polarization free energy of solvation -28.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds