Wall clock time and date at job start Tue Mar 31 2020 06:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 115.54651 * 2 1 4 4 C 1.52995 * 117.49847 * 214.29140 * 2 1 3 5 5 C 1.52996 * 117.49829 * 145.66728 * 2 1 3 6 6 H 1.08994 * 117.49673 * 215.00079 * 5 2 1 7 7 C 1.53001 * 117.49808 * 0.02562 * 5 2 1 8 8 N 1.46904 * 109.46672 * 184.40737 * 7 5 2 9 9 C 1.46899 * 110.99671 * 195.56197 * 8 7 5 10 10 C 1.50700 * 109.47344 * 67.18016 * 9 8 7 11 11 H 1.08001 * 120.00178 * 5.04853 * 10 9 8 12 12 C 1.37875 * 120.00175 * 185.04752 * 10 9 8 13 13 N 1.31512 * 120.00355 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 120.00065 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46879 * 89.99941 * 14 12 10 16 16 H 1.48499 * 109.47269 * 209.99907 * 14 12 10 17 17 H 1.48497 * 109.46858 * 330.00256 * 14 12 10 18 18 C 1.46895 * 111.00511 * 71.60827 * 8 7 5 19 19 C 1.52998 * 109.47562 * 189.99766 * 18 8 7 20 20 N 1.46903 * 109.47456 * 179.97438 * 19 18 8 21 21 C 1.47012 * 110.99706 * 293.63346 * 20 19 18 22 22 C 1.53096 * 109.25505 * 177.60573 * 21 20 19 23 23 O 1.43009 * 109.26034 * 56.85082 * 22 21 20 24 24 C 1.43016 * 113.73970 * 301.33159 * 23 22 21 25 25 C 1.47015 * 110.99651 * 170.00280 * 20 19 18 26 26 H 1.08994 * 109.47276 * 274.32547 * 1 2 3 27 27 H 1.08998 * 109.47437 * 34.33519 * 1 2 3 28 28 H 1.09009 * 109.46744 * 154.33250 * 1 2 3 29 29 H 1.08996 * 117.49951 * 145.01807 * 4 2 1 30 30 H 1.09001 * 117.50015 * 0.02562 * 4 2 1 31 31 H 1.08993 * 109.47388 * 64.40400 * 7 5 2 32 32 H 1.09000 * 109.46715 * 304.39905 * 7 5 2 33 33 H 1.08999 * 109.47504 * 187.18410 * 9 8 7 34 34 H 1.09003 * 109.47408 * 307.18260 * 9 8 7 35 35 H 0.96998 * 120.00522 * 179.97438 * 13 12 10 36 36 H 1.09008 * 109.46971 * 309.99861 * 18 8 7 37 37 H 1.08998 * 109.47368 * 69.99720 * 18 8 7 38 38 H 1.08996 * 109.47384 * 300.00239 * 19 18 8 39 39 H 1.09008 * 109.46725 * 59.99617 * 19 18 8 40 40 H 1.08999 * 109.50984 * 297.54433 * 21 20 19 41 41 H 1.09009 * 109.50309 * 57.67701 * 21 20 19 42 42 H 1.09004 * 109.50884 * 296.91387 * 22 21 20 43 43 H 1.09000 * 109.50720 * 176.78711 * 22 21 20 44 44 H 1.08997 * 109.50561 * 298.73223 * 24 23 22 45 45 H 1.08997 * 109.54273 * 178.62105 * 24 23 22 46 46 H 1.09005 * 109.50663 * 302.32153 * 25 20 19 47 47 H 1.08992 * 109.50809 * 62.45792 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1212 -0.7646 5 6 2.2365 -1.1207 0.7654 6 1 3.1713 -0.8745 1.2689 7 6 1.3588 -2.1559 1.4717 8 7 2.2091 -3.0812 2.2327 9 6 1.4630 -4.2869 2.6165 10 6 1.1243 -5.0823 1.3821 11 1 1.5016 -4.7716 0.4191 12 6 0.3328 -6.2068 1.4822 13 7 0.0377 -6.9013 0.4051 14 14 -0.3192 -6.7449 3.1481 15 1 -1.6339 -6.1008 3.3966 16 1 -0.4803 -8.2210 3.1634 17 1 0.6384 -6.3404 4.2085 18 6 2.7832 -2.4197 3.4120 19 6 3.8484 -3.3236 4.0358 20 7 4.4229 -2.6619 5.2148 21 6 5.1761 -1.4597 4.8293 22 6 5.7057 -0.7700 6.0894 23 8 6.5047 -1.6943 6.8326 24 6 5.8025 -2.8768 7.2249 25 6 5.2739 -3.5879 5.9762 26 1 -0.3633 0.0775 1.0247 27 1 -0.3634 0.8486 -0.5796 28 1 -0.3633 -0.9264 -0.4452 29 1 3.1715 -0.8756 -1.2680 30 1 1.6113 -1.8586 -1.2680 31 1 0.7871 -2.7141 0.7304 32 1 0.6745 -1.6487 2.1518 33 1 2.0734 -4.8948 3.2843 34 1 0.5437 -3.9985 3.1264 35 1 -0.5188 -7.6926 0.4756 36 1 3.2379 -1.4751 3.1133 37 1 1.9958 -2.2294 4.1412 38 1 3.3938 -4.2682 4.3344 39 1 4.6359 -3.5140 3.3065 40 1 6.0127 -1.7434 4.1907 41 1 4.5202 -0.7769 4.2891 42 1 4.8676 -0.4385 6.7024 43 1 6.3126 0.0899 5.8059 44 1 4.9672 -2.6066 7.8709 45 1 6.4788 -3.5410 7.7629 46 1 4.6893 -4.4586 6.2733 47 1 6.1119 -3.9056 5.3560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351323871.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:37 Heat of formation + Delta-G solvation = -10.253138 kcal Electronic energy + Delta-G solvation = -23184.694740 eV Core-core repulsion = 19982.416015 eV Total energy + Delta-G solvation = -3202.278725 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.62923 -38.29614 -36.59410 -35.15466 -32.47786 -31.30031 -29.77495 -28.65344 -27.76657 -26.42557 -24.32099 -23.96589 -22.07204 -21.19738 -20.45697 -19.87611 -18.84638 -16.96942 -16.60438 -16.20666 -15.75751 -15.24910 -15.12808 -14.90129 -14.50235 -14.38089 -13.78678 -13.59623 -13.38168 -13.13596 -12.61993 -12.54621 -12.35351 -12.18128 -12.12415 -11.81781 -11.53919 -11.47690 -11.22108 -11.10122 -10.87755 -10.80139 -10.65614 -10.50165 -9.98047 -9.84182 -9.74556 -9.54106 -9.33157 -9.24235 -8.58065 -8.35336 -7.37773 -6.06730 -4.03630 3.26194 3.34392 3.36396 3.65336 3.81821 4.09951 4.40329 4.74156 4.83092 4.94636 4.95291 5.03471 5.06548 5.18671 5.24699 5.25684 5.33992 5.40950 5.46019 5.52620 5.54502 5.62281 5.73065 5.76766 5.87529 5.90390 5.96104 6.01696 6.06374 6.16798 6.18096 6.24133 6.25776 6.36591 6.39313 6.57693 6.75322 6.88174 6.94800 6.97204 7.04554 7.06425 7.60923 7.91328 8.05293 8.65270 9.03528 9.55631 11.06359 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010789 B = 0.005594 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.688137 B = 5003.745455 C = 7166.936245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.163 4.163 3 H 0.095 0.905 4 C -0.170 4.170 5 C -0.134 4.134 6 H 0.097 0.903 7 C 0.095 3.905 8 N -0.525 5.525 9 C 0.161 3.839 10 C -0.508 4.508 11 H 0.081 0.919 12 C 0.069 3.931 13 N -0.900 5.900 14 Si 0.873 3.127 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.060 3.940 19 C 0.058 3.942 20 N -0.538 5.538 21 C 0.015 3.985 22 C 0.064 3.936 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.018 3.982 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.023 0.977 33 H 0.029 0.971 34 H -0.016 1.016 35 H 0.263 0.737 36 H 0.063 0.937 37 H 0.030 0.970 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.058 0.942 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 12.878 8.436 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.182 4.182 3 H 0.113 0.887 4 C -0.207 4.207 5 C -0.152 4.152 6 H 0.115 0.885 7 C -0.033 4.033 8 N -0.250 5.250 9 C 0.035 3.965 10 C -0.546 4.546 11 H 0.099 0.901 12 C -0.132 4.132 13 N -0.539 5.539 14 Si 0.700 3.300 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.193 1.193 18 C -0.069 4.069 19 C -0.069 4.069 20 N -0.264 5.264 21 C -0.113 4.113 22 C -0.013 4.013 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.111 4.111 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.002 0.998 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.113 0.887 44 H 0.076 0.924 45 H 0.114 0.886 46 H 0.104 0.896 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.970 12.727 8.420 17.217 hybrid contribution -0.677 -0.537 0.684 1.103 sum 7.293 12.190 9.105 16.873 Atomic orbital electron populations 1.21320 0.93155 1.01861 1.01527 1.22350 0.95328 0.94043 1.06484 0.88684 1.23092 1.01878 1.00890 0.94791 1.22383 1.00529 0.98358 0.93947 0.88478 1.21544 0.92839 0.91837 0.97059 1.61827 1.36617 1.06467 1.20040 1.20218 0.91135 0.87896 0.97237 1.21039 1.30319 1.08938 0.94347 0.90054 1.24892 0.95934 0.96297 0.96115 1.69888 1.38051 1.17906 1.28027 0.86903 0.79767 0.77968 0.85343 1.20363 1.21194 1.19263 1.21990 0.96365 0.96568 0.92006 1.22168 0.97169 0.97760 0.89795 1.62181 1.33657 1.06870 1.23712 1.22822 0.97227 0.93846 0.97407 1.22669 0.95144 0.91658 0.91810 1.87953 1.38551 1.30704 1.73545 1.22659 0.96630 0.86635 0.95281 1.22761 0.96261 0.96164 0.95882 0.92506 0.92857 0.92026 0.89622 0.88456 0.88878 0.95848 0.95269 0.99849 0.92690 0.91828 0.95210 0.90068 0.93732 0.93949 0.89408 0.92389 0.88692 0.92357 0.88626 0.89560 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 9.20 37.16 0.34 -1.24 16 2 C -0.16 -2.20 6.41 -90.62 -0.58 -2.78 16 3 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.17 -2.54 9.82 -26.73 -0.26 -2.80 16 5 C -0.13 -2.10 5.65 -90.62 -0.51 -2.61 16 6 H 0.10 1.48 6.76 -51.93 -0.35 1.13 16 7 C 0.10 1.79 4.18 -3.82 -0.02 1.77 16 8 N -0.53 -10.67 4.45 -236.07 -1.05 -11.72 16 9 C 0.16 3.83 3.65 -4.98 -0.02 3.81 16 10 C -0.51 -14.14 8.75 -34.44 -0.30 -14.44 16 11 H 0.08 2.48 7.77 -52.49 -0.41 2.07 16 12 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 14 Si 0.87 21.35 27.37 -169.99 -4.65 16.70 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.31 6.69 56.52 0.38 -5.93 16 18 C 0.06 1.01 4.73 -3.83 -0.02 0.99 16 19 C 0.06 0.94 4.91 -3.82 -0.02 0.92 16 20 N -0.54 -7.41 4.73 -234.30 -1.11 -8.52 16 21 C 0.02 0.18 5.44 -3.71 -0.02 0.16 16 22 C 0.06 0.68 7.01 37.21 0.26 0.94 16 23 O -0.39 -4.76 10.83 -35.23 -0.38 -5.14 16 24 C 0.06 0.70 7.01 37.21 0.26 0.96 16 25 C 0.02 0.22 5.65 -3.71 -0.02 0.20 16 26 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.87 7.90 -51.92 -0.41 0.46 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.10 1.59 7.94 -51.93 -0.41 1.18 16 31 H 0.09 2.01 6.51 -51.93 -0.34 1.67 16 32 H 0.02 0.43 7.71 -51.93 -0.40 0.03 16 33 H 0.03 0.70 5.46 -51.93 -0.28 0.42 16 34 H -0.02 -0.39 7.26 -51.93 -0.38 -0.77 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.06 0.97 4.86 -51.92 -0.25 0.72 16 37 H 0.03 0.53 8.12 -51.93 -0.42 0.10 16 38 H 0.08 1.44 6.24 -51.93 -0.32 1.12 16 39 H 0.04 0.75 8.12 -51.92 -0.42 0.33 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 1.00 6.38 -51.92 -0.33 0.67 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 47 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 358.65 15.07 5.40 5.40 Total: -1.00 -30.03 358.65 -10.54 -40.57 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -8.52 Total: 1.40 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -1.00 Total: -12.24 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -1.38 Total: -46.70 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.38 Total: -5.14 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.65 Total: 16.70 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.03 -10.54 -40.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351323871.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.320 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds