Wall clock time and date at job start Tue Mar 31 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.43771 * 2 1 4 4 C 1.54892 * 110.48592 * 237.45771 * 2 1 3 5 5 C 1.54885 * 102.75046 * 203.24713 * 4 2 1 6 6 C 1.54273 * 104.19251 * 37.94548 * 5 4 2 7 7 C 1.53869 * 106.59806 * 336.38783 * 6 5 4 8 8 H 1.09003 * 110.03349 * 240.71458 * 7 6 5 9 9 N 1.46500 * 110.03335 * 119.28814 * 7 6 5 10 10 C 1.34776 * 120.00184 * 87.82963 * 9 7 6 11 11 O 1.21593 * 119.99822 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00228 * 180.02562 * 10 9 7 13 13 C 1.46501 * 120.00193 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47303 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46798 * 300.00188 * 14 13 12 16 16 C 1.53000 * 109.46916 * 59.99742 * 14 13 12 17 17 C 1.52998 * 109.47135 * 180.02562 * 14 13 12 18 18 C 1.50705 * 109.46786 * 179.97438 * 17 14 13 19 19 H 1.07999 * 120.00297 * 0.02562 * 18 17 14 20 20 C 1.37875 * 119.99582 * 179.97438 * 18 17 14 21 21 N 1.31518 * 120.00015 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00118 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47265 * 90.00089 * 22 20 18 24 24 H 1.48509 * 109.47051 * 209.99743 * 22 20 18 25 25 H 1.48494 * 109.47371 * 329.99590 * 22 20 18 26 26 H 1.08992 * 109.47134 * 179.29834 * 1 2 3 27 27 H 1.08998 * 109.47101 * 299.30158 * 1 2 3 28 28 H 1.09002 * 109.46834 * 59.29823 * 1 2 3 29 29 H 1.08999 * 110.75198 * 321.56765 * 4 2 1 30 30 H 1.08999 * 110.75410 * 84.74586 * 4 2 1 31 31 H 1.08998 * 110.48617 * 156.61766 * 5 4 2 32 32 H 1.08998 * 110.48834 * 279.13854 * 5 4 2 33 33 H 1.09002 * 110.03192 * 95.67784 * 6 5 4 34 34 H 1.09003 * 110.02871 * 217.05501 * 6 5 4 35 35 H 0.97000 * 120.00054 * 267.82792 * 9 7 6 36 36 H 0.97002 * 119.99580 * 0.02562 * 12 10 9 37 37 H 1.09004 * 109.47152 * 300.00539 * 13 12 10 38 38 H 1.09001 * 109.46887 * 60.00162 * 13 12 10 39 39 H 1.08998 * 109.47678 * 60.00313 * 15 14 13 40 40 H 1.09002 * 109.46818 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47368 * 299.99137 * 15 14 13 42 42 H 1.08996 * 109.47244 * 60.00437 * 16 14 13 43 43 H 1.09002 * 109.46667 * 179.97438 * 16 14 13 44 44 H 1.08998 * 109.47567 * 299.99691 * 16 14 13 45 45 H 1.08996 * 109.47149 * 299.99639 * 17 14 13 46 46 H 1.09001 * 109.47023 * 60.00015 * 17 14 13 47 47 H 0.96998 * 120.00118 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7805 -1.2232 5 6 3.4920 -1.1941 -0.7629 6 6 3.3201 -1.5377 0.7313 7 6 2.0727 -0.7785 1.2162 8 1 2.3437 -0.0853 2.0126 9 7 1.0638 -1.7259 1.6966 10 6 1.0806 -2.1348 2.9807 11 8 1.9329 -1.7170 3.7407 12 7 0.1527 -3.0067 3.4225 13 6 0.1707 -3.4508 4.8185 14 6 -0.9796 -4.4310 5.0567 15 6 -2.3105 -3.7375 4.7592 16 6 -0.8177 -5.6411 4.1345 17 6 -0.9612 -4.8943 6.5148 18 6 -2.0946 -5.8594 6.7495 19 1 -2.7611 -6.1169 5.9397 20 6 -2.2801 -6.4143 7.9979 21 7 -3.2689 -7.2569 8.2027 22 14 -1.1268 -5.9694 9.3985 23 1 -1.6578 -4.7848 10.1197 24 1 -1.0235 -7.1152 10.3376 25 1 0.2175 -5.6547 8.8519 26 1 -0.3633 -1.0275 -0.0126 27 1 -0.3633 0.5029 0.8962 28 1 -0.3633 0.5247 -0.8837 29 1 1.4593 -1.6595 -1.4229 30 1 2.1198 -0.1371 -2.1017 31 1 3.8337 -2.0675 -1.3182 32 1 4.1899 -0.3663 -0.8881 33 1 3.1749 -2.6111 0.8533 34 1 4.1969 -1.2137 1.2921 35 1 0.3836 -2.0588 1.0905 36 1 -0.5269 -3.3403 2.8161 37 1 1.1188 -3.9452 5.0304 38 1 0.0558 -2.5886 5.4755 39 1 -2.3239 -3.4072 3.7205 40 1 -3.1300 -4.4357 4.9293 41 1 -2.4259 -2.8755 5.4162 42 1 0.1304 -6.1352 4.3464 43 1 -1.6370 -6.3396 4.3045 44 1 -0.8311 -5.3107 3.0958 45 1 -0.0131 -5.3882 6.7271 46 1 -1.0768 -4.0320 7.1714 47 1 -3.3996 -7.6471 9.0811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352818971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:37 Heat of formation + Delta-G solvation = -58.544610 kcal Electronic energy + Delta-G solvation = -22979.013562 eV Core-core repulsion = 19774.640762 eV Total energy + Delta-G solvation = -3204.372800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.32071 -38.59360 -37.07292 -33.72474 -33.27390 -31.99304 -31.57522 -28.20815 -27.60537 -26.53727 -25.93125 -25.18359 -22.55193 -20.99758 -20.80240 -19.63394 -18.91264 -17.68127 -16.84293 -16.24856 -15.62459 -15.34670 -15.03669 -14.42797 -14.28813 -14.02773 -13.82786 -13.67323 -13.39966 -13.07235 -12.69386 -12.56418 -12.40395 -12.24775 -11.92162 -11.40420 -11.25210 -11.19445 -11.09914 -11.07031 -10.99445 -10.88289 -10.78184 -10.59802 -10.45602 -10.04151 -9.94651 -9.73025 -9.48891 -9.13773 -8.97658 -8.57408 -8.52068 -6.03116 -4.00254 2.87231 3.33034 3.40344 3.40941 3.45603 4.17145 4.34361 4.41089 4.47140 4.54097 4.96464 5.10068 5.14861 5.22275 5.29852 5.30589 5.39241 5.41825 5.44914 5.57298 5.57575 5.65991 5.66682 5.77837 5.86338 5.96152 5.98573 6.10047 6.14752 6.15390 6.22190 6.35881 6.54252 6.59687 6.61530 6.77096 6.93613 7.03336 7.06005 7.10639 7.22842 7.39219 7.79698 8.19405 8.54058 8.80242 9.00973 9.59790 11.09652 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035074 B = 0.003172 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.129481 B = 8825.891029 C = 9094.559864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.121 4.121 5 C -0.124 4.124 6 C -0.136 4.136 7 C 0.164 3.836 8 H 0.089 0.911 9 N -0.744 5.744 10 C 0.699 3.301 11 O -0.596 6.596 12 N -0.738 5.738 13 C 0.145 3.855 14 C -0.063 4.063 15 C -0.127 4.127 16 C -0.127 4.127 17 C -0.002 4.002 18 C -0.510 4.510 19 H 0.078 0.922 20 C 0.066 3.934 21 N -0.905 5.905 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.393 0.607 36 H 0.394 0.606 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.030 0.970 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.030 0.970 45 H 0.018 0.982 46 H 0.014 0.986 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.827 13.106 -19.816 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.104 0.896 4 C -0.159 4.159 5 C -0.162 4.162 6 C -0.175 4.175 7 C 0.058 3.942 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.399 3.601 11 O -0.474 6.474 12 N -0.393 5.393 13 C 0.021 3.979 14 C -0.063 4.063 15 C -0.185 4.185 16 C -0.185 4.185 17 C -0.040 4.040 18 C -0.548 4.548 19 H 0.096 0.904 20 C -0.135 4.135 21 N -0.544 5.544 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.189 1.189 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.229 0.771 36 H 0.229 0.771 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.037 0.963 46 H 0.032 0.968 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.530 13.367 -18.935 25.061 hybrid contribution -0.075 -0.213 0.357 0.423 sum 9.455 13.154 -18.577 24.649 Atomic orbital electron populations 1.21731 0.94576 1.01651 1.02064 1.22277 0.96162 0.99568 0.94346 0.89622 1.22599 0.96332 0.99759 0.97173 1.22351 0.96931 1.01095 0.95849 1.22631 0.98195 1.01147 0.95521 1.21365 0.86975 0.90029 0.95829 0.89291 1.45393 1.34804 1.49866 1.10071 1.16052 0.82212 0.79744 0.82090 1.90902 1.39785 1.61150 1.55609 1.45327 1.32584 1.47799 1.13591 1.21474 0.99364 0.97510 0.79503 1.20694 0.92982 0.93741 0.98920 1.21763 0.98057 1.00409 0.98243 1.21757 1.02548 0.98071 0.96077 1.19590 0.97906 0.96459 0.90030 1.21085 1.12243 1.24426 0.97052 0.90411 1.24998 0.95083 0.94747 0.98622 1.69904 1.30715 1.30750 1.23025 0.86858 0.82376 0.78024 0.82516 1.20372 1.21532 1.18948 0.92655 0.92173 0.92411 0.91402 0.91464 0.91687 0.91586 0.91183 0.91237 0.77068 0.77146 0.92119 0.92111 0.95088 0.90968 0.93435 0.93437 0.90967 0.95086 0.96345 0.96788 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.55 37.16 0.32 -0.64 16 2 C -0.10 -0.75 3.41 -88.96 -0.30 -1.05 16 3 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.12 -0.77 6.33 -24.74 -0.16 -0.92 16 5 C -0.12 -0.88 6.83 -25.07 -0.17 -1.05 16 6 C -0.14 -1.29 6.59 -25.61 -0.17 -1.46 16 7 C 0.16 1.63 3.12 -66.82 -0.21 1.42 16 8 H 0.09 1.07 7.56 -51.93 -0.39 0.68 16 9 N -0.74 -8.05 4.35 -57.58 -0.25 -8.30 16 10 C 0.70 10.50 8.56 -86.92 -0.74 9.76 16 11 O -0.60 -11.48 16.00 5.28 0.08 -11.39 16 12 N -0.74 -10.53 4.96 -65.22 -0.32 -10.85 16 13 C 0.15 2.50 4.56 -4.04 -0.02 2.48 16 14 C -0.06 -1.16 0.54 -154.51 -0.08 -1.24 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 17 C 0.00 -0.05 3.11 -27.88 -0.09 -0.13 16 18 C -0.51 -13.69 8.20 -34.44 -0.28 -13.97 16 19 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 20 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 21 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 22 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 26 H 0.05 0.35 6.14 -51.93 -0.32 0.03 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.76 7.92 -51.93 -0.41 0.35 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.39 3.34 6.43 -40.82 -0.26 3.07 16 36 H 0.39 4.72 6.18 -40.82 -0.25 4.47 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 40 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 44 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 45 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 46 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -31.53 356.66 -8.77 -40.30 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -8.35 Total: 3.31 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -1.41 Total: -8.85 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.20 Total: -45.70 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.53 -8.77 -40.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352818971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.249 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds