Wall clock time and date at job start Tue Mar 31 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.43771 * 2 1 4 4 C 1.54892 * 110.48592 * 237.45771 * 2 1 3 5 5 C 1.54885 * 102.75046 * 203.24713 * 4 2 1 6 6 C 1.54273 * 104.19251 * 37.94548 * 5 4 2 7 7 C 1.53869 * 106.59806 * 336.38783 * 6 5 4 8 8 H 1.09003 * 110.03349 * 240.71458 * 7 6 5 9 9 N 1.46500 * 110.03335 * 119.28814 * 7 6 5 10 10 C 1.34776 * 120.00184 * 87.82963 * 9 7 6 11 11 O 1.21593 * 119.99822 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00228 * 180.02562 * 10 9 7 13 13 C 1.46501 * 120.00193 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47303 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46798 * 300.00188 * 14 13 12 16 16 C 1.53000 * 109.46916 * 59.99742 * 14 13 12 17 17 C 1.52998 * 109.47135 * 180.02562 * 14 13 12 18 18 C 1.50705 * 109.46786 * 179.97438 * 17 14 13 19 19 H 1.07999 * 120.00297 * 0.02562 * 18 17 14 20 20 C 1.37875 * 119.99582 * 179.97438 * 18 17 14 21 21 N 1.31518 * 120.00015 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00118 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47265 * 90.00089 * 22 20 18 24 24 H 1.48509 * 109.47051 * 209.99743 * 22 20 18 25 25 H 1.48494 * 109.47371 * 329.99590 * 22 20 18 26 26 H 1.08992 * 109.47134 * 179.29834 * 1 2 3 27 27 H 1.08998 * 109.47101 * 299.30158 * 1 2 3 28 28 H 1.09002 * 109.46834 * 59.29823 * 1 2 3 29 29 H 1.08999 * 110.75198 * 321.56765 * 4 2 1 30 30 H 1.08999 * 110.75410 * 84.74586 * 4 2 1 31 31 H 1.08998 * 110.48617 * 156.61766 * 5 4 2 32 32 H 1.08998 * 110.48834 * 279.13854 * 5 4 2 33 33 H 1.09002 * 110.03192 * 95.67784 * 6 5 4 34 34 H 1.09003 * 110.02871 * 217.05501 * 6 5 4 35 35 H 0.97000 * 120.00054 * 267.82792 * 9 7 6 36 36 H 0.97002 * 119.99580 * 0.02562 * 12 10 9 37 37 H 1.09004 * 109.47152 * 300.00539 * 13 12 10 38 38 H 1.09001 * 109.46887 * 60.00162 * 13 12 10 39 39 H 1.08998 * 109.47678 * 60.00313 * 15 14 13 40 40 H 1.09002 * 109.46818 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47368 * 299.99137 * 15 14 13 42 42 H 1.08996 * 109.47244 * 60.00437 * 16 14 13 43 43 H 1.09002 * 109.46667 * 179.97438 * 16 14 13 44 44 H 1.08998 * 109.47567 * 299.99691 * 16 14 13 45 45 H 1.08996 * 109.47149 * 299.99639 * 17 14 13 46 46 H 1.09001 * 109.47023 * 60.00015 * 17 14 13 47 47 H 0.96998 * 120.00118 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7805 -1.2232 5 6 3.4920 -1.1941 -0.7629 6 6 3.3201 -1.5377 0.7313 7 6 2.0727 -0.7785 1.2162 8 1 2.3437 -0.0853 2.0126 9 7 1.0638 -1.7259 1.6966 10 6 1.0806 -2.1348 2.9807 11 8 1.9329 -1.7170 3.7407 12 7 0.1527 -3.0067 3.4225 13 6 0.1707 -3.4508 4.8185 14 6 -0.9796 -4.4310 5.0567 15 6 -2.3105 -3.7375 4.7592 16 6 -0.8177 -5.6411 4.1345 17 6 -0.9612 -4.8943 6.5148 18 6 -2.0946 -5.8594 6.7495 19 1 -2.7611 -6.1169 5.9397 20 6 -2.2801 -6.4143 7.9979 21 7 -3.2689 -7.2569 8.2027 22 14 -1.1268 -5.9694 9.3985 23 1 -1.6578 -4.7848 10.1197 24 1 -1.0235 -7.1152 10.3376 25 1 0.2175 -5.6547 8.8519 26 1 -0.3633 -1.0275 -0.0126 27 1 -0.3633 0.5029 0.8962 28 1 -0.3633 0.5247 -0.8837 29 1 1.4593 -1.6595 -1.4229 30 1 2.1198 -0.1371 -2.1017 31 1 3.8337 -2.0675 -1.3182 32 1 4.1899 -0.3663 -0.8881 33 1 3.1749 -2.6111 0.8533 34 1 4.1969 -1.2137 1.2921 35 1 0.3836 -2.0588 1.0905 36 1 -0.5269 -3.3403 2.8161 37 1 1.1188 -3.9452 5.0304 38 1 0.0558 -2.5886 5.4755 39 1 -2.3239 -3.4072 3.7205 40 1 -3.1300 -4.4357 4.9293 41 1 -2.4259 -2.8755 5.4162 42 1 0.1304 -6.1352 4.3464 43 1 -1.6370 -6.3396 4.3045 44 1 -0.8311 -5.3107 3.0958 45 1 -0.0131 -5.3882 6.7271 46 1 -1.0768 -4.0320 7.1714 47 1 -3.3996 -7.6471 9.0811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352818971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:36 Heat of formation + Delta-G solvation = -78.082241 kcal Electronic energy + Delta-G solvation = -22979.860777 eV Core-core repulsion = 19774.640762 eV Total energy + Delta-G solvation = -3205.220015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38400 -39.60295 -38.45000 -35.19079 -34.54337 -33.71532 -32.18576 -29.79505 -28.76424 -27.97853 -27.18419 -25.86190 -24.36557 -22.16702 -21.45545 -20.44550 -20.18119 -19.08689 -18.87245 -17.25775 -16.55555 -16.43658 -16.28170 -15.87708 -15.47682 -15.31260 -15.06043 -14.91610 -14.60929 -14.20101 -14.14917 -13.92997 -13.67567 -13.17018 -12.95135 -12.84159 -12.72953 -12.56645 -12.29717 -12.15366 -11.98849 -11.82833 -11.77489 -11.70478 -11.50953 -11.47488 -11.40317 -11.35093 -11.12010 -10.90185 -10.70182 -10.29734 -9.69394 -8.22295 -6.22187 1.35909 1.38774 1.48959 1.78002 2.20961 2.39323 3.13283 3.36525 3.56377 3.72329 3.93612 3.94580 4.07789 4.17461 4.35685 4.45298 4.58761 4.59236 4.64166 4.65579 4.73338 4.78505 4.79014 4.86637 4.96499 5.00700 5.03064 5.09537 5.10222 5.22622 5.25850 5.30613 5.33900 5.37465 5.39734 5.41372 5.51825 5.52546 5.58779 5.69693 5.70477 5.77038 6.07313 6.38551 6.84571 7.15504 7.40665 7.64929 8.93301 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035074 B = 0.003172 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.129481 B = 8825.891029 C = 9094.559864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.093 0.907 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.136 4.136 7 C 0.158 3.842 8 H 0.063 0.937 9 N -0.724 5.724 10 C 0.697 3.303 11 O -0.641 6.641 12 N -0.727 5.727 13 C 0.159 3.841 14 C -0.057 4.057 15 C -0.122 4.122 16 C -0.122 4.122 17 C -0.004 4.004 18 C -0.501 4.501 19 H 0.053 0.947 20 C 0.006 3.994 21 N -0.951 5.951 22 Si 0.933 3.067 23 H -0.272 1.272 24 H -0.288 1.288 25 H -0.253 1.253 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.408 0.592 36 H 0.408 0.592 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.045 0.955 44 H 0.068 0.932 45 H 0.014 0.986 46 H 0.013 0.987 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.594 14.511 -22.115 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.111 0.889 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.175 4.175 7 C 0.053 3.947 8 H 0.081 0.919 9 N -0.382 5.382 10 C 0.397 3.603 11 O -0.522 6.522 12 N -0.383 5.383 13 C 0.034 3.966 14 C -0.058 4.058 15 C -0.179 4.179 16 C -0.179 4.179 17 C -0.041 4.041 18 C -0.539 4.539 19 H 0.072 0.928 20 C -0.190 4.190 21 N -0.593 5.593 22 Si 0.758 3.242 23 H -0.197 1.197 24 H -0.214 1.214 25 H -0.177 1.177 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.247 0.753 36 H 0.245 0.755 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.032 0.968 46 H 0.031 0.969 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.281 14.782 -21.300 27.890 hybrid contribution -0.323 -0.634 0.994 1.223 sum 9.957 14.147 -20.306 26.676 Atomic orbital electron populations 1.21736 0.93978 1.02105 1.02184 1.22253 0.96579 0.99591 0.93147 0.88897 1.22589 0.95472 1.00053 0.97115 1.22331 0.97909 1.01703 0.93753 1.22593 0.97457 1.00038 0.97425 1.21494 0.87259 0.89716 0.96262 0.91864 1.45247 1.35057 1.49155 1.08734 1.16200 0.81644 0.79527 0.82942 1.90879 1.41541 1.62680 1.57151 1.45027 1.32956 1.47699 1.12643 1.21090 0.97953 0.96515 0.81006 1.20553 0.94255 0.94636 0.96325 1.21687 0.96216 0.99409 1.00613 1.21683 1.01175 0.97003 0.98060 1.19566 0.95872 0.95368 0.93343 1.21368 1.12365 1.24075 0.96091 0.92845 1.25814 0.96680 0.95044 1.01456 1.70037 1.32904 1.32659 1.23699 0.85914 0.80916 0.77817 0.79539 1.19701 1.21445 1.17663 0.92031 0.93458 0.90898 0.90945 0.89764 0.91075 0.90768 0.92578 0.92482 0.75285 0.75480 0.93268 0.93130 0.91297 0.93566 0.93768 0.93847 0.93546 0.91315 0.96792 0.96901 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.55 71.98 0.62 -0.88 16 2 C -0.10 -1.14 3.41 -9.72 -0.03 -1.17 16 3 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.11 -1.07 6.33 31.88 0.20 -0.87 16 5 C -0.12 -1.40 6.83 31.67 0.22 -1.18 16 6 C -0.14 -2.45 6.59 31.32 0.21 -2.24 16 7 C 0.16 2.95 3.12 45.71 0.14 3.10 16 8 H 0.06 1.53 7.56 -2.39 -0.02 1.51 16 9 N -0.72 -14.34 4.35 -454.35 -1.98 -16.31 16 10 C 0.70 20.01 8.56 179.05 1.53 21.54 16 11 O -0.64 -24.56 16.00 -4.01 -0.06 -24.62 16 12 N -0.73 -19.19 4.96 -478.53 -2.37 -21.56 16 13 C 0.16 5.27 4.56 86.38 0.39 5.66 16 14 C -0.06 -2.04 0.54 -52.18 -0.03 -2.07 16 15 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 16 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 17 C 0.00 -0.16 3.11 29.85 0.09 -0.07 16 18 C -0.50 -27.29 8.20 25.60 0.21 -27.08 16 19 H 0.05 3.12 5.92 -2.91 -0.02 3.10 16 20 C 0.01 0.36 5.47 84.65 0.46 0.82 16 21 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 22 Si 0.93 44.79 27.47 68.60 1.88 46.68 16 23 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 25 H -0.25 -11.53 6.54 99.48 0.65 -10.87 16 26 H 0.06 0.56 6.14 -2.39 -0.01 0.54 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.64 8.06 -2.39 -0.02 0.62 16 30 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 1.16 7.92 -2.39 -0.02 1.14 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.41 5.70 6.43 -92.71 -0.60 5.11 16 36 H 0.41 8.38 6.18 -92.71 -0.57 7.80 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 40 H 0.05 1.78 6.62 -2.39 -0.02 1.77 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.05 1.79 6.62 -2.39 -0.02 1.78 16 44 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 45 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 46 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 47 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -69.96 356.66 2.67 -67.29 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -0.28 Total: 18.48 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 5.17 Total: -11.41 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -4.05 Total: -96.42 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.06 Total: -24.62 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.68 kcal Total: -69.96 2.67 -67.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352818971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.789 kcal (2) G-P(sol) polarization free energy of solvation -69.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds