Wall clock time and date at job start Tue Mar 31 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.54156 * 2 1 4 4 C 1.55007 * 110.52543 * 122.66549 * 2 1 3 5 5 C 1.54889 * 102.75653 * 156.61610 * 4 2 1 6 6 C 1.54262 * 104.19518 * 322.04442 * 5 4 2 7 7 C 1.53873 * 106.59772 * 23.61306 * 6 5 4 8 8 H 1.08996 * 110.03645 * 119.33325 * 7 6 5 9 9 N 1.46497 * 110.03152 * 240.71430 * 7 6 5 10 10 C 1.34787 * 120.00162 * 272.90856 * 9 7 6 11 11 O 1.21587 * 119.99399 * 359.97438 * 10 9 7 12 12 N 1.34767 * 120.00011 * 180.02562 * 10 9 7 13 13 C 1.46500 * 119.99818 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47373 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46943 * 60.00098 * 14 13 12 16 16 C 1.52997 * 109.46974 * 300.00163 * 14 13 12 17 17 C 1.52999 * 109.46997 * 180.02562 * 14 13 12 18 18 C 1.50706 * 109.46573 * 180.02562 * 17 14 13 19 19 H 1.07995 * 120.00167 * 359.72054 * 18 17 14 20 20 C 1.37879 * 119.99394 * 179.97438 * 18 17 14 21 21 N 1.31514 * 120.00338 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99424 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47474 * 90.00322 * 22 20 18 24 24 H 1.48507 * 109.46754 * 210.00056 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99887 * 22 20 18 26 26 H 1.09007 * 109.46894 * 182.60832 * 1 2 3 27 27 H 1.09001 * 109.47357 * 302.61045 * 1 2 3 28 28 H 1.09003 * 109.46727 * 62.61169 * 1 2 3 29 29 H 1.08997 * 110.76314 * 38.29502 * 4 2 1 30 30 H 1.09008 * 110.90678 * 274.99915 * 4 2 1 31 31 H 1.09010 * 110.48691 * 203.37018 * 5 4 2 32 32 H 1.09005 * 110.48718 * 80.72638 * 5 4 2 33 33 H 1.09000 * 110.03646 * 264.32781 * 6 5 4 34 34 H 1.09007 * 110.07019 * 142.91888 * 6 5 4 35 35 H 0.97003 * 120.00501 * 92.90280 * 9 7 6 36 36 H 0.97003 * 120.00651 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.47175 * 59.99847 * 13 12 10 38 38 H 1.08996 * 109.47197 * 300.00089 * 13 12 10 39 39 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.46832 * 300.00025 * 15 14 13 41 41 H 1.08992 * 109.47303 * 59.99728 * 15 14 13 42 42 H 1.09000 * 109.47140 * 299.99606 * 16 14 13 43 43 H 1.09001 * 109.47375 * 59.99624 * 16 14 13 44 44 H 1.09002 * 109.47497 * 179.97438 * 16 14 13 45 45 H 1.09000 * 109.47486 * 60.00167 * 17 14 13 46 46 H 1.09001 * 109.47362 * 299.99445 * 17 14 13 47 47 H 0.96996 * 119.99730 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0735 -0.7835 1.2221 5 6 3.4919 -1.1987 0.7588 6 6 3.3171 -1.5404 -0.7353 7 6 2.0700 -0.7787 -1.2173 8 1 2.3404 -0.0857 -2.0139 9 7 1.0588 -1.7241 -1.6969 10 6 1.0817 -2.1432 -2.9778 11 8 1.9414 -1.7362 -3.7352 12 7 0.1512 -3.0124 -3.4191 13 6 0.1759 -3.4675 -4.8114 14 6 -0.9792 -4.4421 -5.0500 15 6 -2.3076 -3.7376 -4.7672 16 6 -0.8317 -5.6459 -4.1173 17 6 -0.9531 -4.9178 -6.5039 18 6 -2.0912 -5.8773 -6.7390 19 1 -2.7629 -6.1266 -5.9310 20 6 -2.2717 -6.4408 -7.9844 21 7 -1.4504 -6.1413 -8.9670 22 14 -3.6828 -7.6295 -8.2760 23 1 -4.8829 -6.8745 -8.7178 24 1 -3.2981 -8.6063 -9.3264 25 1 -3.9892 -8.3528 -7.0158 26 1 -0.3633 -1.0267 0.0468 27 1 -0.3634 0.5538 0.8657 28 1 -0.3633 0.4728 -0.9125 29 1 1.4598 -1.6619 1.4219 30 1 2.1268 -0.1429 2.1025 31 1 3.8334 -2.0733 1.3127 32 1 4.1909 -0.3713 0.8817 33 1 3.1700 -2.6134 -0.8583 34 1 4.1928 -1.2169 -1.2980 35 1 0.3728 -2.0486 -1.0927 36 1 -0.5348 -3.3369 -2.8149 37 1 1.1220 -3.9698 -5.0128 38 1 0.0712 -2.6098 -5.4759 39 1 -3.1305 -4.4321 -4.9367 40 1 -2.3259 -3.3991 -3.7312 41 1 -2.4127 -2.8800 -5.4315 42 1 0.1147 -6.1478 -4.3189 43 1 -0.8500 -5.3074 -3.0814 44 1 -1.6548 -6.3401 -4.2869 45 1 -0.0067 -5.4198 -6.7051 46 1 -1.0581 -4.0604 -7.1687 47 1 -1.5772 -6.5381 -9.8429 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352818972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:39 Heat of formation + Delta-G solvation = -62.086817 kcal Electronic energy + Delta-G solvation = -22929.736451 eV Core-core repulsion = 19725.210049 eV Total energy + Delta-G solvation = -3204.526402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.26195 -38.52441 -36.95670 -33.66569 -33.24220 -31.95617 -31.54239 -28.04255 -27.01800 -26.48796 -25.87711 -25.15337 -22.89492 -21.00039 -20.77422 -19.59630 -18.86199 -17.67276 -16.38262 -16.13349 -15.56753 -15.27855 -14.97087 -14.53595 -14.27107 -14.03376 -13.90494 -13.56938 -13.13033 -12.96147 -12.72866 -12.52655 -12.25126 -12.04929 -11.85424 -11.36979 -11.21163 -11.10828 -11.04394 -10.99617 -10.85683 -10.84119 -10.74756 -10.61778 -10.37142 -10.23191 -9.95207 -9.84972 -9.17812 -9.07681 -8.90740 -8.49136 -8.34501 -5.98522 -3.99758 2.93750 3.31595 3.38615 3.40352 3.47285 4.20232 4.37218 4.43626 4.49136 4.58333 4.99245 5.13047 5.17352 5.25069 5.34373 5.36988 5.42556 5.47596 5.53760 5.60225 5.67507 5.68927 5.77779 5.80551 5.88765 5.99873 6.01825 6.13774 6.20517 6.25469 6.32674 6.44691 6.63622 6.64957 6.65162 6.84891 7.09000 7.09872 7.12025 7.19969 7.66412 7.79034 8.00414 8.26137 8.42324 8.87341 9.05159 9.63226 11.12984 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038427 B = 0.003000 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.479831 B = 9330.595268 C = 9537.145885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.086 0.914 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.136 4.136 7 C 0.164 3.836 8 H 0.089 0.911 9 N -0.745 5.745 10 C 0.698 3.302 11 O -0.595 6.595 12 N -0.738 5.738 13 C 0.147 3.853 14 C -0.072 4.072 15 C -0.125 4.125 16 C -0.126 4.126 17 C 0.036 3.964 18 C -0.511 4.511 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.393 0.607 36 H 0.392 0.608 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.028 0.972 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.028 0.972 44 H 0.066 0.934 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.648 10.524 21.249 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.104 0.896 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.175 4.175 7 C 0.058 3.942 8 H 0.107 0.893 9 N -0.402 5.402 10 C 0.398 3.602 11 O -0.473 6.473 12 N -0.393 5.393 13 C 0.024 3.976 14 C -0.073 4.073 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.001 4.001 18 C -0.549 4.549 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.200 1.200 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.228 0.772 36 H 0.227 0.773 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.085 0.915 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.479 10.848 20.317 23.675 hybrid contribution -1.354 -1.037 0.215 1.719 sum 4.125 9.812 20.532 23.126 Atomic orbital electron populations 1.21732 0.94604 1.01599 1.02087 1.22291 0.96133 0.99553 0.94345 0.89607 1.22619 0.96351 0.99718 0.97158 1.22358 0.96930 1.01064 0.95885 1.22631 0.98230 1.01155 0.95482 1.21363 0.86970 0.90063 0.95795 0.89338 1.45400 1.34298 1.50048 1.10486 1.16065 0.82336 0.79751 0.82024 1.90905 1.39332 1.61464 1.55630 1.45372 1.31912 1.47959 1.14083 1.21466 0.99435 0.97448 0.79261 1.20912 0.92620 0.93522 1.00242 1.21743 0.98156 1.00267 0.98105 1.21747 1.02312 0.98221 0.96007 1.19088 0.97446 0.96223 0.87377 1.21188 1.12536 1.25559 0.95616 0.92276 1.25015 0.96246 0.96861 0.96392 1.69966 1.37171 1.44176 1.02076 0.86654 0.82707 0.81061 0.77907 1.20789 1.21350 1.19963 0.92676 0.92447 0.92128 0.91427 0.91496 0.91696 0.91592 0.91190 0.91222 0.77151 0.77306 0.92111 0.92094 0.91537 0.95339 0.93387 0.93397 0.95346 0.91531 0.96330 0.96321 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.48 37.16 0.32 -0.68 16 2 C -0.10 -0.77 3.42 -88.90 -0.30 -1.08 16 3 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.12 -0.79 6.33 -24.67 -0.16 -0.95 16 5 C -0.12 -0.92 6.83 -25.07 -0.17 -1.09 16 6 C -0.14 -1.35 6.59 -25.62 -0.17 -1.51 16 7 C 0.16 1.69 3.10 -66.81 -0.21 1.49 16 8 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 9 N -0.74 -8.38 4.36 -57.58 -0.25 -8.63 16 10 C 0.70 10.92 8.56 -86.92 -0.74 10.17 16 11 O -0.59 -11.89 16.01 5.29 0.08 -11.81 16 12 N -0.74 -11.02 4.96 -65.22 -0.32 -11.34 16 13 C 0.15 2.68 4.56 -4.04 -0.02 2.67 16 14 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 17 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 18 C -0.51 -13.60 7.65 -34.44 -0.26 -13.86 16 19 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 22 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 H 0.05 0.35 6.21 -51.93 -0.32 0.03 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.44 8.04 -51.93 -0.42 0.02 16 30 H 0.07 0.38 8.14 -51.92 -0.42 -0.05 16 31 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.39 3.47 6.43 -40.82 -0.26 3.21 16 36 H 0.39 4.91 6.18 -40.82 -0.25 4.65 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 40 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 44 H 0.07 1.26 6.61 -51.93 -0.34 0.92 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -31.27 360.30 -9.15 -40.42 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -8.39 Total: 3.42 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -1.41 Total: -7.90 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.16 Total: -45.79 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.27 -9.15 -40.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352818972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.666 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds