Wall clock time and date at job start Tue Mar 31 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.53921 * 2 1 4 4 C 1.54897 * 110.48272 * 122.60881 * 2 1 3 5 5 C 1.54886 * 102.74687 * 156.62400 * 4 2 1 6 6 C 1.54268 * 104.19503 * 322.05709 * 5 4 2 7 7 C 1.53869 * 106.60150 * 23.61168 * 6 5 4 8 8 H 1.09004 * 110.03350 * 240.67176 * 7 6 5 9 9 N 1.46499 * 110.03382 * 119.28455 * 7 6 5 10 10 C 1.34777 * 119.99665 * 86.73307 * 9 7 6 11 11 O 1.21583 * 120.00270 * 359.72083 * 10 9 7 12 12 N 1.34775 * 119.99585 * 179.72218 * 10 9 7 13 13 C 1.46507 * 119.99876 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46968 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.46792 * 299.99939 * 14 13 12 16 16 C 1.53000 * 109.47308 * 60.00234 * 14 13 12 17 17 C 1.52994 * 109.46837 * 180.02562 * 14 13 12 18 18 C 1.50701 * 109.47362 * 179.97438 * 17 14 13 19 19 H 1.07999 * 119.99305 * 0.02562 * 18 17 14 20 20 C 1.37876 * 120.00190 * 179.97438 * 18 17 14 21 21 N 1.31519 * 119.99542 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00085 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47180 * 90.00070 * 22 20 18 24 24 H 1.48503 * 109.46903 * 210.00050 * 22 20 18 25 25 H 1.48498 * 109.47152 * 329.99815 * 22 20 18 26 26 H 1.09002 * 109.47233 * 182.61590 * 1 2 3 27 27 H 1.08994 * 109.47327 * 302.61909 * 1 2 3 28 28 H 1.08997 * 109.46788 * 62.61874 * 1 2 3 29 29 H 1.08993 * 110.75422 * 38.30624 * 4 2 1 30 30 H 1.09002 * 110.91339 * 275.01073 * 4 2 1 31 31 H 1.08998 * 110.48734 * 203.37571 * 5 4 2 32 32 H 1.09003 * 110.48555 * 80.73091 * 5 4 2 33 33 H 1.09004 * 110.03203 * 264.32231 * 6 5 4 34 34 H 1.08996 * 110.07268 * 142.91928 * 6 5 4 35 35 H 0.97001 * 119.99790 * 266.45020 * 9 7 6 36 36 H 0.97000 * 120.00523 * 0.02562 * 12 10 9 37 37 H 1.08998 * 109.47039 * 300.00042 * 13 12 10 38 38 H 1.08994 * 109.46660 * 60.00264 * 13 12 10 39 39 H 1.08994 * 109.47215 * 60.00531 * 15 14 13 40 40 H 1.09001 * 109.46679 * 180.02562 * 15 14 13 41 41 H 1.08994 * 109.47407 * 299.99965 * 15 14 13 42 42 H 1.08996 * 109.46830 * 59.99776 * 16 14 13 43 43 H 1.09001 * 109.46739 * 180.02562 * 16 14 13 44 44 H 1.09003 * 109.46595 * 299.99718 * 16 14 13 45 45 H 1.08996 * 109.47756 * 299.99976 * 17 14 13 46 46 H 1.09008 * 109.47349 * 59.99909 * 17 14 13 47 47 H 0.96999 * 119.99467 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0721 -0.7820 1.2223 5 6 3.4907 -1.1979 0.7602 6 6 3.3166 -1.5405 -0.7338 7 6 2.0700 -0.7789 -1.2172 8 1 1.3180 -1.4823 -1.5747 9 7 2.4347 0.1525 -2.2875 10 6 2.4650 -0.2698 -3.5670 11 8 2.1946 -1.4251 -3.8324 12 7 2.7950 0.5885 -4.5523 13 6 2.8285 0.1293 -5.9431 14 6 3.2296 1.2912 -6.8543 15 6 2.2100 2.4236 -6.7154 16 6 4.6152 1.8001 -6.4518 17 6 3.2639 0.8118 -8.3067 18 6 3.6584 1.9562 -9.2043 19 1 3.8644 2.9282 -8.7810 20 6 3.7573 1.7622 -10.5658 21 7 4.1020 2.7609 -11.3490 22 14 3.4016 0.0808 -11.2979 23 1 1.9597 -0.0154 -11.6396 24 1 4.2150 -0.1063 -12.5262 25 1 3.7476 -0.9725 -10.3099 26 1 -0.3634 -1.0266 0.0469 27 1 -0.3633 0.5539 0.8655 28 1 -0.3633 0.4726 -0.9125 29 1 1.4580 -1.6599 1.4224 30 1 2.1249 -0.1407 2.1022 31 1 3.8316 -2.0721 1.3149 32 1 4.1897 -0.3706 0.8829 33 1 3.1693 -2.6136 -0.8561 34 1 4.1927 -1.2178 -1.2962 35 1 2.6503 1.0742 -2.0757 36 1 3.0110 1.5101 -4.3405 37 1 3.5551 -0.6771 -6.0421 38 1 1.8415 -0.2336 -6.2297 39 1 2.1851 2.7652 -5.6807 40 1 2.4955 3.2511 -7.3648 41 1 1.2230 2.0610 -7.0022 42 1 5.3414 0.9934 -6.5507 43 1 4.9006 2.6282 -7.1006 44 1 4.5902 2.1418 -5.4170 45 1 3.9899 0.0049 -8.4061 46 1 2.2766 0.4494 -8.5933 47 1 4.1712 2.6245 -12.3068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352818973.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:42 Heat of formation + Delta-G solvation = -64.991425 kcal Electronic energy + Delta-G solvation = -22800.563504 eV Core-core repulsion = 19595.911149 eV Total energy + Delta-G solvation = -3204.652355 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.22065 -38.56839 -37.09823 -33.77321 -33.35851 -31.99893 -31.57977 -28.17907 -27.59372 -26.53790 -26.01786 -24.93468 -22.49066 -21.27240 -20.36829 -20.18726 -18.64322 -17.54957 -16.94506 -16.66828 -15.55032 -15.13958 -14.96916 -14.33773 -14.15022 -13.91226 -13.82111 -13.73425 -13.37774 -13.30279 -12.69284 -12.50592 -12.37319 -12.25093 -11.92331 -11.60110 -11.30313 -11.21834 -11.09734 -11.02489 -10.99299 -10.94112 -10.75685 -10.59854 -10.45766 -10.04553 -9.94715 -9.73067 -9.48946 -9.13554 -8.97698 -8.57713 -8.52090 -6.03162 -4.00262 2.85970 3.33021 3.39239 3.40915 3.45559 4.17090 4.34720 4.39642 4.47119 4.57363 4.95427 5.12981 5.16260 5.20535 5.28044 5.29811 5.35914 5.41433 5.53964 5.57386 5.60313 5.63337 5.66548 5.77601 5.86497 5.95671 6.00070 6.08925 6.14647 6.15221 6.21754 6.35744 6.54028 6.59171 6.61536 6.76797 6.93309 7.03244 7.05697 7.09850 7.22745 7.39113 7.79673 8.18747 8.54056 8.79232 9.00946 9.59752 11.09610 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036052 B = 0.003025 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.462098 B = 9252.766970 C = 9368.754881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 H 0.079 0.921 4 C -0.119 4.119 5 C -0.124 4.124 6 C -0.137 4.137 7 C 0.164 3.836 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.700 3.300 11 O -0.595 6.595 12 N -0.738 5.738 13 C 0.145 3.855 14 C -0.063 4.063 15 C -0.127 4.127 16 C -0.127 4.127 17 C -0.002 4.002 18 C -0.510 4.510 19 H 0.078 0.922 20 C 0.066 3.934 21 N -0.905 5.905 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.393 0.607 36 H 0.394 0.606 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.030 0.970 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.030 0.970 45 H 0.018 0.982 46 H 0.014 0.986 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.720 -3.881 25.151 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 H 0.097 0.903 4 C -0.156 4.156 5 C -0.162 4.162 6 C -0.176 4.176 7 C 0.059 3.941 8 H 0.108 0.892 9 N -0.401 5.401 10 C 0.399 3.601 11 O -0.474 6.474 12 N -0.393 5.393 13 C 0.021 3.979 14 C -0.063 4.063 15 C -0.185 4.185 16 C -0.184 4.184 17 C -0.040 4.040 18 C -0.548 4.548 19 H 0.096 0.904 20 C -0.135 4.135 21 N -0.544 5.544 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.189 1.189 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.226 0.774 36 H 0.229 0.771 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.037 0.963 46 H 0.032 0.968 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.940 -4.923 24.673 25.466 hybrid contribution 0.074 0.025 -0.437 0.444 sum -3.866 -4.899 24.236 25.027 Atomic orbital electron populations 1.21802 0.94364 1.02144 1.01889 1.22243 0.96123 0.99502 0.94249 0.90268 1.22539 0.96311 0.99868 0.96928 1.22356 0.96915 1.01117 0.95832 1.22611 0.98544 1.00799 0.95617 1.21507 0.96302 0.90822 0.85511 0.89161 1.45305 1.75609 1.13984 1.05179 1.16040 0.78342 0.85097 0.80578 1.90902 1.56473 1.17272 1.82718 1.45335 1.73874 1.13140 1.06944 1.21478 1.01251 0.97246 0.77893 1.20694 0.95364 0.93712 0.96556 1.21762 0.98384 0.99218 0.99113 1.21757 0.96133 1.01899 0.98658 1.19591 0.96603 0.97415 0.90389 1.21083 1.45966 0.96850 0.90903 0.90413 1.25000 0.94774 0.96395 0.97295 1.69906 1.48810 1.31205 1.04461 0.86855 0.78490 0.85608 0.78811 1.20372 1.21532 1.18946 0.92371 0.92490 0.92406 0.91110 0.91334 0.91622 0.91668 0.91241 0.91227 0.77384 0.77097 0.92116 0.92108 0.95083 0.90963 0.93438 0.93432 0.90967 0.95085 0.96343 0.96790 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.12 37.16 0.34 -0.69 16 2 C -0.10 -0.74 3.16 -88.95 -0.28 -1.02 16 3 H 0.08 0.52 7.73 -51.93 -0.40 0.12 16 4 C -0.12 -0.75 6.33 -24.74 -0.16 -0.91 16 5 C -0.12 -0.89 6.83 -25.07 -0.17 -1.06 16 6 C -0.14 -1.32 6.59 -25.62 -0.17 -1.48 16 7 C 0.16 1.64 2.80 -66.82 -0.19 1.46 16 8 H 0.09 1.11 7.30 -51.93 -0.38 0.73 16 9 N -0.75 -8.08 5.00 -57.58 -0.29 -8.36 16 10 C 0.70 10.53 8.56 -86.92 -0.74 9.78 16 11 O -0.60 -11.48 16.02 5.29 0.08 -11.40 16 12 N -0.74 -10.53 4.96 -65.22 -0.32 -10.85 16 13 C 0.15 2.49 4.56 -4.04 -0.02 2.48 16 14 C -0.06 -1.15 0.54 -154.51 -0.08 -1.24 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 17 C 0.00 -0.05 3.11 -27.89 -0.09 -0.14 16 18 C -0.51 -13.69 8.20 -34.44 -0.28 -13.97 16 19 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 20 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 21 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 22 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 26 H 0.06 0.42 8.12 -51.93 -0.42 -0.01 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.44 8.04 -51.93 -0.42 0.02 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.76 7.92 -51.93 -0.41 0.35 16 35 H 0.39 3.21 8.36 -40.82 -0.34 2.87 16 36 H 0.39 4.71 6.18 -40.82 -0.25 4.46 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 40 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 44 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 45 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 46 H 0.01 0.32 7.57 -51.92 -0.39 -0.07 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -31.64 360.52 -8.82 -40.46 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.50 Total: 3.13 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -1.34 Total: -8.83 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.16 Total: -45.77 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.64 -8.82 -40.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352818973.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.532 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds