Wall clock time and date at job start Tue Mar 31 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.43291 * 2 1 4 4 C 1.55238 * 110.58012 * 237.41750 * 2 1 3 5 5 C 1.54894 * 102.58338 * 203.33342 * 4 2 1 6 6 C 1.54266 * 104.31305 * 37.93170 * 5 4 2 7 7 C 1.53869 * 106.60031 * 336.32486 * 6 5 4 8 8 H 1.08999 * 110.04012 * 119.28327 * 7 6 5 9 9 N 1.46508 * 110.02801 * 240.66793 * 7 6 5 10 10 C 1.34779 * 119.99939 * 273.53990 * 9 7 6 11 11 O 1.21591 * 119.99570 * 0.02562 * 10 9 7 12 12 N 1.34771 * 120.00057 * 180.02562 * 10 9 7 13 13 C 1.46507 * 119.99924 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.46796 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.47604 * 300.00196 * 14 13 12 16 16 C 1.52997 * 109.47033 * 60.00545 * 14 13 12 17 17 C 1.53007 * 109.46774 * 179.97438 * 14 13 12 18 18 C 1.50700 * 109.47064 * 180.02562 * 17 14 13 19 19 H 1.08004 * 119.99986 * 0.02562 * 18 17 14 20 20 C 1.37873 * 120.00197 * 180.02562 * 18 17 14 21 21 N 1.31521 * 119.99740 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00326 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46803 * 59.99958 * 22 20 18 24 24 H 1.48497 * 109.47371 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47269 * 300.00489 * 22 20 18 26 26 H 1.09002 * 109.47015 * 297.45451 * 1 2 3 27 27 H 1.08997 * 109.47536 * 57.46280 * 1 2 3 28 28 H 1.09001 * 109.46911 * 177.46124 * 1 2 3 29 29 H 1.08996 * 110.89448 * 85.04906 * 4 2 1 30 30 H 1.08993 * 110.76342 * 321.56571 * 4 2 1 31 31 H 1.09002 * 110.48891 * 279.18596 * 5 4 2 32 32 H 1.08998 * 110.48494 * 156.67683 * 5 4 2 33 33 H 1.09001 * 110.03084 * 95.60669 * 6 5 4 34 34 H 1.08996 * 110.03108 * 216.98559 * 6 5 4 35 35 H 0.96997 * 120.00015 * 93.55272 * 9 7 6 36 36 H 0.97000 * 120.00102 * 359.97438 * 12 10 9 37 37 H 1.08998 * 109.47087 * 300.00269 * 13 12 10 38 38 H 1.09001 * 109.47013 * 60.00000 * 13 12 10 39 39 H 1.09005 * 109.47193 * 59.99844 * 15 14 13 40 40 H 1.08997 * 109.47531 * 180.02562 * 15 14 13 41 41 H 1.09001 * 109.47011 * 300.00204 * 15 14 13 42 42 H 1.09003 * 109.47499 * 59.99584 * 16 14 13 43 43 H 1.09000 * 109.47409 * 179.97438 * 16 14 13 44 44 H 1.09001 * 109.47205 * 299.99473 * 16 14 13 45 45 H 1.08998 * 109.47185 * 300.00603 * 17 14 13 46 46 H 1.09001 * 109.46938 * 60.00349 * 17 14 13 47 47 H 0.96999 * 119.99893 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0757 -0.7826 -1.2246 5 6 3.4938 -1.1945 -0.7572 6 6 3.3186 -1.5367 0.7368 7 6 2.0700 -0.7773 1.2182 8 1 1.3185 -1.4819 1.5745 9 7 2.4314 0.1546 2.2893 10 6 2.4658 -0.2693 3.5683 11 8 2.1972 -1.4252 3.8330 12 7 2.7978 0.5881 4.5537 13 6 2.8356 0.1272 5.9438 14 6 3.2382 1.2882 6.8552 15 6 4.6221 1.7991 6.4495 16 6 2.2173 2.4198 6.7208 17 6 3.2771 0.8070 8.3071 18 6 3.6731 1.9507 9.2050 19 1 3.8762 2.9237 8.7824 20 6 3.7760 1.7551 10.5659 21 7 3.5291 0.5702 11.0804 22 14 4.2661 3.1730 11.6789 23 1 3.2743 4.2705 11.5482 24 1 4.3052 2.7056 13.0879 25 1 5.6090 3.6700 11.2853 26 1 -0.3633 0.4738 0.9119 27 1 -0.3634 0.5527 -0.8663 28 1 -0.3633 -1.0267 -0.0455 29 1 2.1301 -0.1404 -2.1036 30 1 1.4642 -1.6624 -1.4247 31 1 4.1915 -0.3660 -0.8795 32 1 3.8393 -2.0677 -1.3106 33 1 3.1732 -2.6100 0.8594 34 1 4.1940 -1.2122 1.2993 35 1 2.6459 1.0767 2.0781 36 1 3.0124 1.5102 4.3424 37 1 1.8498 -0.2372 6.2328 38 1 3.5633 -0.6787 6.0397 39 1 4.5939 2.1420 5.4151 40 1 4.9091 2.6259 7.0991 41 1 5.3494 0.9929 6.5452 42 1 1.2313 2.0559 7.0099 43 1 2.5038 3.2468 7.3704 44 1 2.1891 2.7627 5.6866 45 1 2.2910 0.4433 8.5959 46 1 4.0042 0.0006 8.4032 47 1 3.6012 0.4326 12.0379 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352818974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:45 Heat of formation + Delta-G solvation = -68.304887 kcal Electronic energy + Delta-G solvation = -22747.779865 eV Core-core repulsion = 19542.983828 eV Total energy + Delta-G solvation = -3204.796037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.15431 -38.49249 -36.97991 -33.71171 -33.32270 -31.96168 -31.54577 -28.00270 -27.01893 -26.48846 -25.96276 -24.90526 -22.83552 -21.26857 -20.34118 -20.13850 -18.62178 -17.52013 -16.78107 -16.25803 -15.48687 -15.05398 -14.90947 -14.48545 -14.14073 -13.99361 -13.77351 -13.61171 -13.32201 -13.01094 -12.72363 -12.43433 -12.24818 -12.04551 -11.86384 -11.56253 -11.27323 -11.11543 -10.99661 -10.98078 -10.91053 -10.86002 -10.72010 -10.61013 -10.37001 -10.24664 -9.95604 -9.84806 -9.17687 -9.07546 -8.91661 -8.49551 -8.34148 -5.98316 -3.99673 2.92204 3.32744 3.38218 3.39385 3.46041 4.20522 4.37752 4.42887 4.48209 4.61677 4.98302 5.15935 5.18858 5.23618 5.31610 5.37011 5.39198 5.53081 5.57169 5.63178 5.66214 5.67496 5.77749 5.80482 5.89414 5.99288 6.03915 6.12308 6.20483 6.25278 6.32271 6.44519 6.63419 6.64188 6.65030 6.84542 7.08800 7.09888 7.11317 7.19406 7.66191 7.79022 8.00449 8.25371 8.42327 8.86234 9.04990 9.63232 11.13149 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040849 B = 0.002858 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.286852 B = 9793.676033 C = 9868.337027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 H 0.078 0.922 4 C -0.118 4.118 5 C -0.125 4.125 6 C -0.137 4.137 7 C 0.164 3.836 8 H 0.090 0.910 9 N -0.746 5.746 10 C 0.699 3.301 11 O -0.594 6.594 12 N -0.738 5.738 13 C 0.147 3.853 14 C -0.072 4.072 15 C -0.126 4.126 16 C -0.126 4.126 17 C 0.036 3.964 18 C -0.511 4.511 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.392 0.608 36 H 0.393 0.607 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.028 0.972 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.028 0.972 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.435 1.012 -24.225 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 H 0.097 0.903 4 C -0.156 4.156 5 C -0.162 4.162 6 C -0.176 4.176 7 C 0.059 3.941 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.399 3.601 11 O -0.473 6.473 12 N -0.393 5.393 13 C 0.024 3.976 14 C -0.073 4.073 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.001 4.001 18 C -0.550 4.550 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.204 1.204 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.225 0.775 36 H 0.227 0.773 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.047 0.953 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.698 -0.178 -23.758 23.911 hybrid contribution 0.526 1.589 0.604 1.780 sum -2.171 1.412 -23.154 23.298 Atomic orbital electron populations 1.21801 0.94385 1.02154 1.01859 1.22303 0.96099 0.99473 0.94250 0.90329 1.22596 0.96293 0.99846 0.96876 1.22355 0.96902 1.01109 0.95864 1.22611 0.98548 1.00845 0.95566 1.21492 0.96304 0.90838 0.85493 0.89158 1.45309 1.75786 1.13831 1.05236 1.16056 0.78382 0.85146 0.80551 1.90908 1.56454 1.17204 1.82694 1.45381 1.73785 1.13006 1.07141 1.21470 1.01322 0.97294 0.77539 1.20909 0.94713 0.93607 0.98055 1.21744 0.96652 1.01621 0.98266 1.21747 0.98709 0.99127 0.98704 1.19084 0.97491 0.96562 0.86971 1.21148 1.46079 0.96302 0.91439 0.92335 1.25013 0.95692 0.95451 0.98339 1.69959 1.49479 1.21681 1.12283 0.86711 0.79026 0.82719 0.79833 1.20344 1.21402 1.20351 0.92398 0.92524 0.92362 0.91341 0.91082 0.91717 0.91653 0.91219 0.91230 0.77466 0.77259 0.92089 0.92103 0.95328 0.91531 0.93402 0.93397 0.91531 0.95331 0.96327 0.96327 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.13 37.16 0.34 -0.73 16 2 C -0.10 -0.77 3.15 -88.77 -0.28 -1.05 16 3 H 0.08 0.53 7.73 -51.93 -0.40 0.13 16 4 C -0.12 -0.78 6.36 -24.55 -0.16 -0.94 16 5 C -0.12 -0.92 6.82 -25.07 -0.17 -1.09 16 6 C -0.14 -1.37 6.58 -25.62 -0.17 -1.53 16 7 C 0.16 1.71 2.79 -66.81 -0.19 1.52 16 8 H 0.09 1.15 7.30 -51.93 -0.38 0.77 16 9 N -0.75 -8.42 5.00 -57.58 -0.29 -8.71 16 10 C 0.70 10.95 8.55 -86.92 -0.74 10.20 16 11 O -0.59 -11.90 16.02 5.29 0.08 -11.82 16 12 N -0.74 -11.02 4.96 -65.22 -0.32 -11.34 16 13 C 0.15 2.68 4.56 -4.04 -0.02 2.67 16 14 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 15 C -0.13 -2.22 8.05 37.15 0.30 -1.92 16 16 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 17 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 18 C -0.51 -13.63 7.65 -34.44 -0.26 -13.89 16 19 H 0.06 1.49 5.68 -52.48 -0.30 1.20 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 22 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.79 7.92 -51.93 -0.41 0.37 16 35 H 0.39 3.36 8.36 -40.82 -0.34 3.02 16 36 H 0.39 4.90 6.18 -40.82 -0.25 4.65 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 40 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.26 6.61 -51.93 -0.34 0.92 16 44 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 364.19 15.07 5.49 5.49 Total: -1.00 -31.36 364.19 -9.20 -40.56 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.53 Total: 3.29 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -1.34 Total: -7.88 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.12 Total: -45.88 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.36 -9.20 -40.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352818974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.743 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds