Wall clock time and date at job start Tue Mar 31 2020 06:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.45637 * 2 1 4 4 C 1.53037 * 109.45973 * 240.03098 * 2 1 3 5 5 C 1.53198 * 109.31126 * 178.62788 * 4 2 1 6 6 N 1.46921 * 108.77422 * 54.63133 * 5 4 2 7 7 C 1.34784 * 120.62906 * 126.37520 * 6 5 4 8 8 O 1.21580 * 119.99658 * 174.95988 * 7 6 5 9 9 N 1.34776 * 119.99637 * 354.95516 * 7 6 5 10 10 C 1.46500 * 119.99465 * 185.07352 * 9 7 6 11 11 C 1.53002 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47487 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47264 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00223 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99892 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99944 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99812 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47251 * 59.99973 * 17 15 13 19 19 H 1.48499 * 109.46914 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47299 * 300.00115 * 17 15 13 21 21 C 1.46925 * 118.74091 * 306.39277 * 6 5 4 22 22 C 1.53040 * 109.44944 * 119.96561 * 2 1 3 23 23 C 1.52999 * 109.49457 * 301.33128 * 22 2 1 24 24 C 1.52994 * 109.49534 * 61.39717 * 22 2 1 25 25 H 1.09001 * 109.46818 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46961 * 299.97006 * 1 2 3 27 27 H 1.08998 * 109.46824 * 59.97725 * 1 2 3 28 28 H 1.08998 * 109.50207 * 58.67363 * 4 2 1 29 29 H 1.09002 * 109.52731 * 298.58839 * 4 2 1 30 30 H 1.08995 * 109.58714 * 174.42109 * 5 4 2 31 31 H 1.09001 * 109.58487 * 294.84084 * 5 4 2 32 32 H 0.96994 * 120.00370 * 5.07976 * 9 7 6 33 33 H 1.09003 * 109.47190 * 300.00005 * 10 9 7 34 34 H 1.08994 * 109.47078 * 60.00495 * 10 9 7 35 35 H 1.09002 * 109.46936 * 300.00681 * 11 10 9 36 36 H 1.09006 * 109.46836 * 59.99818 * 11 10 9 37 37 H 1.09006 * 109.47004 * 300.00278 * 12 11 10 38 38 H 1.09002 * 109.47014 * 59.99643 * 12 11 10 39 39 H 0.97004 * 119.99824 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.58549 * 293.82420 * 21 6 5 41 41 H 1.08999 * 109.70658 * 173.47042 * 21 6 5 42 42 H 1.09000 * 109.47116 * 60.00771 * 23 22 2 43 43 H 1.09007 * 109.47041 * 179.97438 * 23 22 2 44 44 H 1.09000 * 109.47663 * 299.99601 * 23 22 2 45 45 H 1.09003 * 109.47244 * 60.00119 * 24 22 2 46 46 H 1.08998 * 109.47148 * 179.97438 * 24 22 2 47 47 H 1.09002 * 109.47515 * 299.99738 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5715 -0.6889 -1.2640 6 7 4.0677 -1.2492 0.0003 7 6 4.9612 -2.2583 0.0004 8 8 5.4333 -2.6519 1.0494 9 7 5.3310 -2.8310 -1.1622 10 6 6.2155 -3.9988 -1.1546 11 6 6.4783 -4.4489 -2.5931 12 6 7.4014 -5.6689 -2.5853 13 6 7.6607 -6.1118 -4.0022 14 1 7.2116 -5.5769 -4.8259 15 6 8.4705 -7.2006 -4.2468 16 7 9.0170 -7.8523 -3.2438 17 14 8.7913 -7.7500 -6.0031 18 1 9.4375 -6.6457 -6.7571 19 1 9.6874 -8.9341 -5.9955 20 1 7.5046 -8.1065 -6.6532 21 6 3.5711 -0.6888 1.2645 22 6 2.0397 -0.7208 1.2502 23 6 1.5025 -0.0187 2.4989 24 6 1.5586 -2.1730 1.2340 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5134 0.8902 27 1 -0.3633 0.5142 -0.8898 28 1 1.6575 -0.2208 -2.1398 29 1 1.6978 -1.7557 -1.2389 30 1 3.9418 -1.2849 -2.0981 31 1 3.9146 0.3406 -1.3671 32 1 5.0117 -2.4699 -2.0039 33 1 7.1600 -3.7362 -0.6782 34 1 5.7421 -4.8094 -0.6007 35 1 5.5339 -4.7113 -3.0700 36 1 6.9518 -3.6380 -3.1468 37 1 8.3459 -5.4068 -2.1083 38 1 6.9275 -6.4796 -2.0317 39 1 9.5864 -8.6186 -3.4159 40 1 3.9142 0.3407 1.3676 41 1 3.9412 -1.2827 2.1002 42 1 0.4127 -0.0393 2.4869 43 1 1.8653 -0.5327 3.3891 44 1 1.8464 1.0156 2.5107 45 1 1.9425 -2.6731 0.3447 46 1 1.9221 -2.6861 2.1243 47 1 0.4689 -2.1948 1.2212 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354190768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:48 Heat of formation + Delta-G solvation = -54.974281 kcal Electronic energy + Delta-G solvation = -22943.593137 eV Core-core repulsion = 19739.375159 eV Total energy + Delta-G solvation = -3204.217979 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.77435 -38.72838 -35.39923 -34.78973 -33.25109 -32.74638 -31.08396 -28.83514 -27.53581 -27.39158 -26.01454 -23.70770 -22.73631 -22.37902 -20.59105 -19.75447 -18.44876 -17.93547 -16.48107 -16.03884 -15.73957 -15.45179 -14.73786 -14.57392 -14.50787 -14.31315 -14.09961 -13.71039 -13.52144 -13.36038 -12.74048 -12.38604 -12.26692 -12.16469 -12.03852 -11.90889 -11.77724 -11.65664 -11.44632 -11.30904 -10.90269 -10.85966 -10.70791 -10.60813 -10.52665 -10.40326 -9.95336 -9.83512 -9.41330 -9.11955 -8.87446 -8.39748 -8.35483 -6.00298 -4.03431 2.75077 3.32718 3.37480 3.38498 3.39351 4.01266 4.35474 4.40116 4.45786 4.46753 4.69341 4.91933 5.02746 5.07181 5.14425 5.25383 5.33874 5.35285 5.43542 5.50213 5.54390 5.60708 5.64815 5.67786 5.71602 5.72764 5.75703 5.81251 5.84581 5.93696 6.04110 6.10501 6.21611 6.26946 6.46980 6.58931 6.65093 6.85238 7.05217 7.08946 7.65359 7.78776 7.98678 8.12915 8.39656 8.79282 9.03087 9.60495 11.10999 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033230 B = 0.002867 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.408238 B = 9762.748914 C =10168.455739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 H 0.070 0.930 4 C -0.134 4.134 5 C 0.111 3.889 6 N -0.631 5.631 7 C 0.705 3.295 8 O -0.592 6.592 9 N -0.743 5.743 10 C 0.134 3.866 11 C -0.120 4.120 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.141 3.859 22 C -0.075 4.075 23 C -0.141 4.141 24 C -0.140 4.140 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.392 0.608 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.125 18.752 6.941 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 H 0.088 0.912 4 C -0.172 4.172 5 C -0.012 4.012 6 N -0.369 5.369 7 C 0.406 3.594 8 O -0.470 6.470 9 N -0.399 5.399 10 C 0.011 3.989 11 C -0.158 4.158 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C 0.017 3.983 22 C -0.076 4.076 23 C -0.199 4.199 24 C -0.197 4.197 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.228 0.772 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.627 18.258 7.752 26.536 hybrid contribution 0.070 -0.179 -1.473 1.485 sum -17.557 18.078 6.279 25.971 Atomic orbital electron populations 1.21939 0.95123 1.02087 1.01582 1.21102 0.95711 0.99008 0.93964 0.91165 1.22060 0.95051 1.02001 0.98103 1.21606 0.94361 0.99071 0.86183 1.47211 1.45666 1.37137 1.06871 1.15908 0.79521 0.79370 0.84601 1.90897 1.58865 1.66304 1.30927 1.45566 1.53643 1.33960 1.06780 1.21503 0.92682 0.85292 0.99418 1.21885 1.00876 1.00574 0.92451 1.19016 0.93953 0.91056 0.97275 1.21171 1.29378 1.13138 0.92433 0.92723 1.25030 0.95858 0.96535 0.97030 1.69958 1.32407 1.20296 1.30617 0.86644 0.78145 0.78101 0.85005 1.20257 1.21271 1.20256 1.21476 0.92002 0.98406 0.86409 1.20933 0.95098 0.96345 0.95256 1.21863 1.01191 1.00101 0.96743 1.21897 1.00525 0.94903 1.02404 0.92336 0.92350 0.92870 0.90797 0.90863 0.90329 0.91491 0.77192 0.91934 0.92095 0.92862 0.92822 0.96243 0.96267 0.92870 0.92150 0.88892 0.92006 0.92380 0.92585 0.92229 0.92707 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.49 37.16 0.32 -0.61 16 2 C -0.08 -0.56 2.00 -90.58 -0.18 -0.74 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -1.00 5.02 -26.61 -0.13 -1.13 16 5 C 0.11 0.98 6.43 -3.71 -0.02 0.96 16 6 N -0.63 -7.58 2.41 -178.50 -0.43 -8.01 16 7 C 0.70 11.40 8.30 -86.91 -0.72 10.68 16 8 O -0.59 -12.01 15.79 5.29 0.08 -11.93 16 9 N -0.74 -11.43 5.47 -65.22 -0.36 -11.79 16 10 C 0.13 2.47 5.68 -4.04 -0.02 2.45 16 11 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 12 C 0.02 0.63 4.97 -27.89 -0.14 0.50 16 13 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 17 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.14 1.50 5.09 -3.71 -0.02 1.48 16 22 C -0.08 -0.63 0.55 -154.40 -0.08 -0.71 16 23 C -0.14 -0.97 8.09 37.16 0.30 -0.67 16 24 C -0.14 -1.35 7.67 37.15 0.28 -1.06 16 25 H 0.06 0.39 6.47 -51.93 -0.34 0.05 16 26 H 0.06 0.33 6.40 -51.93 -0.33 0.00 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.63 6.34 -51.93 -0.33 0.30 16 30 H 0.08 0.66 5.56 -51.93 -0.29 0.37 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.39 4.96 5.93 -40.82 -0.24 4.71 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.20 7.04 -51.93 -0.37 0.84 16 42 H 0.06 0.38 6.40 -51.93 -0.33 0.05 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.67 5.98 -51.93 -0.31 0.36 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.46 6.47 -51.93 -0.34 0.13 16 LS Contribution 356.56 15.07 5.37 5.37 Total: -1.00 -32.54 356.56 -8.92 -41.46 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -8.33 Total: -0.51 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -0.98 Total: -4.87 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -0.05 Total: -46.08 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.54 -8.92 -41.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354190768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.511 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds