Wall clock time and date at job start Tue Mar 31 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 115.56034 * 2 1 4 4 C 1.52997 * 117.49907 * 214.30665 * 2 1 3 5 5 C 1.52995 * 60.00311 * 252.51364 * 4 2 1 6 6 H 1.09007 * 117.49993 * 252.49198 * 5 4 2 7 7 C 1.52995 * 117.50192 * 107.48590 * 5 4 2 8 8 C 1.50710 * 109.47072 * 116.39557 * 7 5 4 9 9 O 1.21283 * 119.99713 * 0.02562 * 8 7 5 10 10 N 1.34770 * 119.99798 * 180.02562 * 8 7 5 11 11 C 1.46497 * 120.00415 * 359.97438 * 10 8 7 12 12 C 1.50694 * 109.47219 * 274.81125 * 11 10 8 13 13 H 1.08007 * 119.99964 * 355.13503 * 12 11 10 14 14 C 1.37883 * 120.00152 * 175.13751 * 12 11 10 15 15 N 1.31512 * 120.00265 * 185.06911 * 14 12 11 16 16 Si 1.86799 * 119.99855 * 5.06962 * 14 12 11 17 17 H 1.48508 * 109.47009 * 84.80083 * 16 14 12 18 18 H 1.48496 * 109.47371 * 204.80191 * 16 14 12 19 19 H 1.48503 * 109.47329 * 324.80224 * 16 14 12 20 20 C 1.46502 * 119.99528 * 179.97438 * 10 8 7 21 21 C 1.53002 * 109.47344 * 274.74361 * 20 10 8 22 22 C 1.52999 * 109.47217 * 180.02562 * 21 20 10 23 23 N 1.46896 * 109.47365 * 180.02562 * 22 21 20 24 24 C 1.46903 * 111.00002 * 66.04452 * 23 22 21 25 25 C 1.46897 * 111.00070 * 190.00114 * 23 22 21 26 26 H 1.08998 * 109.47730 * 274.31639 * 1 2 3 27 27 H 1.09009 * 109.47067 * 34.31413 * 1 2 3 28 28 H 1.09001 * 109.47269 * 154.31251 * 1 2 3 29 29 H 1.09007 * 117.49901 * 145.02017 * 4 2 1 30 30 H 1.09004 * 117.49915 * 0.02562 * 4 2 1 31 31 H 1.08996 * 109.47261 * 356.39868 * 7 5 4 32 32 H 1.09000 * 109.47567 * 236.39376 * 7 5 4 33 33 H 1.09007 * 109.47221 * 154.80794 * 11 10 8 34 34 H 1.08997 * 109.46816 * 34.81308 * 11 10 8 35 35 H 0.97000 * 120.00251 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.47414 * 34.74709 * 20 10 8 37 37 H 1.09006 * 109.47321 * 154.74525 * 20 10 8 38 38 H 1.08998 * 109.47045 * 300.00148 * 21 20 10 39 39 H 1.09002 * 109.46607 * 60.00315 * 21 20 10 40 40 H 1.09005 * 109.47370 * 300.00243 * 22 21 20 41 41 H 1.08999 * 109.47286 * 59.99768 * 22 21 20 42 42 H 1.08997 * 109.47071 * 60.00260 * 24 23 22 43 43 H 1.09000 * 109.46941 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.46958 * 300.00154 * 24 23 22 45 45 H 1.08995 * 109.47364 * 60.00139 * 25 23 22 46 46 H 1.09000 * 109.46845 * 180.02562 * 25 23 22 47 47 H 1.09001 * 109.47385 * 299.99383 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7649 5 6 2.2364 -1.1210 0.7651 6 1 3.1716 -0.8755 1.2684 7 6 1.3587 -2.1561 1.4715 8 6 2.2299 -3.0966 2.2638 9 8 3.4342 -2.9527 2.2638 10 7 1.6708 -4.0974 2.9724 11 6 0.2161 -4.2707 2.9729 12 6 -0.3952 -3.3830 4.0260 13 1 0.2406 -2.8121 4.6866 14 6 -1.7662 -3.2995 4.1463 15 7 -2.3013 -2.4509 4.9968 16 14 -2.8637 -4.3917 3.1014 17 1 -3.0243 -5.7110 3.7640 18 1 -4.1943 -3.7513 2.9446 19 1 -2.2450 -4.5812 1.7647 20 6 2.5178 -5.0120 3.7421 21 6 3.0125 -6.1374 2.8313 22 6 3.8965 -7.0929 3.6353 23 7 4.3719 -8.1731 2.7607 24 6 5.2728 -7.6528 1.7235 25 6 5.0239 -9.2335 3.5407 26 1 -0.3634 0.0773 1.0247 27 1 -0.3634 0.8489 -0.5794 28 1 -0.3634 -0.9261 -0.4455 29 1 3.1716 -0.8752 -1.2682 30 1 1.6112 -1.8583 -1.2685 31 1 0.7948 -2.7213 0.7296 32 1 0.6673 -1.6481 2.1438 33 1 -0.0257 -5.3113 3.1897 34 1 -0.1822 -4.0015 1.9947 35 1 -3.2658 -2.3920 5.0812 36 1 3.3723 -4.4661 4.1420 37 1 1.9410 -5.4366 4.5638 38 1 2.1580 -6.6833 2.4314 39 1 3.5892 -5.7128 2.0096 40 1 4.7510 -6.5473 4.0356 41 1 3.3194 -7.5174 4.4568 42 1 6.1344 -7.1797 2.1946 43 1 5.6096 -8.4732 1.0899 44 1 4.7424 -6.9193 1.1163 45 1 4.3127 -9.6492 4.2544 46 1 5.3668 -10.0203 2.8687 47 1 5.8766 -8.8178 4.0775 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354807482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:18 Heat of formation + Delta-G solvation = -20.558777 kcal Electronic energy + Delta-G solvation = -23025.391582 eV Core-core repulsion = 19822.665972 eV Total energy + Delta-G solvation = -3202.725611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.41295 -37.79664 -37.25366 -35.17804 -32.90730 -31.74462 -29.35597 -28.01402 -27.82566 -27.62999 -25.64171 -22.71168 -22.57415 -21.25431 -20.69417 -19.38684 -18.05552 -17.05090 -16.54076 -15.87298 -15.58477 -15.23211 -14.92725 -14.65151 -14.34051 -14.04984 -13.81066 -13.36603 -13.01144 -12.76756 -12.57458 -12.41267 -12.25635 -12.08338 -11.99098 -11.82387 -11.68879 -11.54829 -11.33459 -11.29545 -11.21111 -10.89886 -10.82476 -10.55535 -10.32571 -10.15989 -9.64159 -9.60240 -9.46463 -9.00505 -8.71402 -8.39668 -7.73747 -6.22666 -4.23902 3.17645 3.24781 3.26788 3.41765 3.73086 4.01117 4.13829 4.25938 4.97354 5.00173 5.07491 5.09868 5.12403 5.20965 5.24023 5.33826 5.45821 5.53446 5.57834 5.59916 5.64760 5.73416 5.74736 5.81146 5.90916 5.95942 5.97166 6.04111 6.09997 6.12292 6.16402 6.29486 6.41598 6.43907 6.47755 6.55291 6.57256 6.69420 6.75540 6.99033 7.01659 7.39578 7.43571 8.15197 8.41400 8.82913 8.99307 9.37162 10.89809 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010688 B = 0.005695 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.109689 B = 4915.067694 C = 6891.305201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.155 4.155 3 H 0.099 0.901 4 C -0.180 4.180 5 C -0.127 4.127 6 H 0.113 0.887 7 C -0.106 4.106 8 C 0.524 3.476 9 O -0.572 6.572 10 N -0.592 5.592 11 C 0.209 3.791 12 C -0.541 4.541 13 H 0.078 0.922 14 C 0.078 3.922 15 N -0.889 5.889 16 Si 0.870 3.130 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.123 3.877 21 C -0.130 4.130 22 C 0.058 3.942 23 N -0.549 5.549 24 C 0.022 3.978 25 C 0.025 3.975 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.029 0.971 34 H 0.033 0.967 35 H 0.266 0.734 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.024 0.976 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.959 -5.518 -7.641 13.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.174 4.174 3 H 0.117 0.883 4 C -0.217 4.217 5 C -0.146 4.146 6 H 0.131 0.869 7 C -0.146 4.146 8 C 0.313 3.687 9 O -0.453 6.453 10 N -0.322 5.322 11 C 0.087 3.913 12 C -0.580 4.580 13 H 0.096 0.904 14 C -0.126 4.126 15 N -0.527 5.527 16 Si 0.696 3.304 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.189 1.189 20 C -0.001 4.001 21 C -0.169 4.169 22 C -0.070 4.070 23 N -0.272 5.272 24 C -0.126 4.126 25 C -0.124 4.124 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.132 0.868 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 8.963 -5.596 -7.786 13.126 hybrid contribution -0.133 -0.250 0.026 0.284 sum 8.831 -5.845 -7.761 13.129 Atomic orbital electron populations 1.21364 0.92815 1.01465 1.02523 1.22367 0.95470 0.94217 1.05305 0.88255 1.23134 1.02051 1.01713 0.94846 1.22174 1.00954 0.98434 0.93013 0.86881 1.21183 0.97944 0.95800 0.99645 1.20419 0.88149 0.80803 0.79304 1.90567 1.15473 1.73556 1.65677 1.47890 1.08539 1.28819 1.46938 1.19798 0.75932 0.97574 0.97973 1.21380 0.92202 1.27060 1.17315 0.90378 1.24863 0.97806 0.94831 0.95078 1.69895 1.11794 1.34952 1.36038 0.86982 0.80587 0.81365 0.81450 1.19824 1.20948 1.18906 1.21213 0.94997 0.90218 0.93713 1.21962 0.99659 0.95966 0.99281 1.22082 0.98040 0.91650 0.95218 1.61978 1.38609 1.11934 1.14718 1.22426 0.94841 1.00124 0.95225 1.22368 0.97614 0.94728 0.97642 0.91401 0.92733 0.92562 0.89385 0.89161 0.89710 0.86842 0.95252 0.94892 0.92351 0.91196 0.90352 0.91193 0.91616 0.94717 0.90624 0.95711 0.91781 0.90864 0.91356 0.91628 0.95850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 9.19 37.16 0.34 -1.35 16 2 C -0.16 -2.16 6.41 -90.62 -0.58 -2.74 16 3 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 4 C -0.18 -2.49 9.82 -26.73 -0.26 -2.76 16 5 C -0.13 -2.08 5.42 -90.62 -0.49 -2.57 16 6 H 0.11 2.00 7.30 -51.92 -0.38 1.62 16 7 C -0.11 -1.95 3.67 -27.88 -0.10 -2.05 16 8 C 0.52 10.78 7.60 -10.98 -0.08 10.70 16 9 O -0.57 -12.66 15.22 5.55 0.08 -12.57 16 10 N -0.59 -12.04 2.48 -175.05 -0.43 -12.47 16 11 C 0.21 4.55 3.99 -5.20 -0.02 4.53 16 12 C -0.54 -14.00 9.35 -34.44 -0.32 -14.32 16 13 H 0.08 2.28 8.06 -52.48 -0.42 1.85 16 14 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.89 -25.44 13.96 55.43 0.77 -24.67 16 16 Si 0.87 19.59 27.47 -169.99 -4.67 14.92 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.26 -5.62 6.58 56.52 0.37 -5.25 16 20 C 0.12 2.19 5.34 -4.04 -0.02 2.16 16 21 C -0.13 -2.01 5.43 -26.73 -0.15 -2.16 16 22 C 0.06 0.78 4.96 -3.83 -0.02 0.76 16 23 N -0.55 -6.92 5.02 -251.26 -1.26 -8.18 16 24 C 0.02 0.26 9.32 60.07 0.56 0.82 16 25 C 0.02 0.25 9.57 60.06 0.57 0.83 16 26 H 0.07 1.01 7.83 -51.93 -0.41 0.60 16 27 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 28 H 0.06 0.76 7.90 -51.93 -0.41 0.35 16 29 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.09 1.20 7.94 -51.93 -0.41 0.79 16 31 H 0.08 1.46 7.14 -51.93 -0.37 1.09 16 32 H 0.11 2.28 7.23 -51.93 -0.38 1.90 16 33 H 0.03 0.63 7.57 -51.92 -0.39 0.23 16 34 H 0.03 0.71 5.62 -51.93 -0.29 0.41 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.07 1.29 7.57 -51.93 -0.39 0.89 16 37 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.10 6.55 -51.93 -0.34 0.76 16 40 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 41 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 42 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 44 H 0.07 0.92 6.47 -51.93 -0.34 0.59 16 45 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 47 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -29.06 373.42 -9.30 -38.36 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -8.76 Total: 5.16 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -0.67 Total: -6.18 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.92 Total: -45.32 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.67 Total: 14.92 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.06 -9.30 -38.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354807482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.802 kcal (2) G-P(sol) polarization free energy of solvation -29.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds