Wall clock time and date at job start Tue Mar 31 2020 06:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 115.56034 * 2 1 4 4 C 1.52997 * 117.49907 * 214.30665 * 2 1 3 5 5 C 1.52995 * 60.00311 * 252.51364 * 4 2 1 6 6 H 1.09007 * 117.49993 * 252.49198 * 5 4 2 7 7 C 1.52995 * 117.50192 * 107.48590 * 5 4 2 8 8 C 1.50710 * 109.47072 * 116.39557 * 7 5 4 9 9 O 1.21283 * 119.99713 * 0.02562 * 8 7 5 10 10 N 1.34770 * 119.99798 * 180.02562 * 8 7 5 11 11 C 1.46497 * 120.00415 * 359.97438 * 10 8 7 12 12 C 1.50694 * 109.47219 * 274.81125 * 11 10 8 13 13 H 1.08007 * 119.99964 * 355.13503 * 12 11 10 14 14 C 1.37883 * 120.00152 * 175.13751 * 12 11 10 15 15 N 1.31512 * 120.00265 * 185.06911 * 14 12 11 16 16 Si 1.86799 * 119.99855 * 5.06962 * 14 12 11 17 17 H 1.48508 * 109.47009 * 84.80083 * 16 14 12 18 18 H 1.48496 * 109.47371 * 204.80191 * 16 14 12 19 19 H 1.48503 * 109.47329 * 324.80224 * 16 14 12 20 20 C 1.46502 * 119.99528 * 179.97438 * 10 8 7 21 21 C 1.53002 * 109.47344 * 274.74361 * 20 10 8 22 22 C 1.52999 * 109.47217 * 180.02562 * 21 20 10 23 23 N 1.46896 * 109.47365 * 180.02562 * 22 21 20 24 24 C 1.46903 * 111.00002 * 66.04452 * 23 22 21 25 25 C 1.46897 * 111.00070 * 190.00114 * 23 22 21 26 26 H 1.08998 * 109.47730 * 274.31639 * 1 2 3 27 27 H 1.09009 * 109.47067 * 34.31413 * 1 2 3 28 28 H 1.09001 * 109.47269 * 154.31251 * 1 2 3 29 29 H 1.09007 * 117.49901 * 145.02017 * 4 2 1 30 30 H 1.09004 * 117.49915 * 0.02562 * 4 2 1 31 31 H 1.08996 * 109.47261 * 356.39868 * 7 5 4 32 32 H 1.09000 * 109.47567 * 236.39376 * 7 5 4 33 33 H 1.09007 * 109.47221 * 154.80794 * 11 10 8 34 34 H 1.08997 * 109.46816 * 34.81308 * 11 10 8 35 35 H 0.97000 * 120.00251 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.47414 * 34.74709 * 20 10 8 37 37 H 1.09006 * 109.47321 * 154.74525 * 20 10 8 38 38 H 1.08998 * 109.47045 * 300.00148 * 21 20 10 39 39 H 1.09002 * 109.46607 * 60.00315 * 21 20 10 40 40 H 1.09005 * 109.47370 * 300.00243 * 22 21 20 41 41 H 1.08999 * 109.47286 * 59.99768 * 22 21 20 42 42 H 1.08997 * 109.47071 * 60.00260 * 24 23 22 43 43 H 1.09000 * 109.46941 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.46958 * 300.00154 * 24 23 22 45 45 H 1.08995 * 109.47364 * 60.00139 * 25 23 22 46 46 H 1.09000 * 109.46845 * 180.02562 * 25 23 22 47 47 H 1.09001 * 109.47385 * 299.99383 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7649 5 6 2.2364 -1.1210 0.7651 6 1 3.1716 -0.8755 1.2684 7 6 1.3587 -2.1561 1.4715 8 6 2.2299 -3.0966 2.2638 9 8 3.4342 -2.9527 2.2638 10 7 1.6708 -4.0974 2.9724 11 6 0.2161 -4.2707 2.9729 12 6 -0.3952 -3.3830 4.0260 13 1 0.2406 -2.8121 4.6866 14 6 -1.7662 -3.2995 4.1463 15 7 -2.3013 -2.4509 4.9968 16 14 -2.8637 -4.3917 3.1014 17 1 -3.0243 -5.7110 3.7640 18 1 -4.1943 -3.7513 2.9446 19 1 -2.2450 -4.5812 1.7647 20 6 2.5178 -5.0120 3.7421 21 6 3.0125 -6.1374 2.8313 22 6 3.8965 -7.0929 3.6353 23 7 4.3719 -8.1731 2.7607 24 6 5.2728 -7.6528 1.7235 25 6 5.0239 -9.2335 3.5407 26 1 -0.3634 0.0773 1.0247 27 1 -0.3634 0.8489 -0.5794 28 1 -0.3634 -0.9261 -0.4455 29 1 3.1716 -0.8752 -1.2682 30 1 1.6112 -1.8583 -1.2685 31 1 0.7948 -2.7213 0.7296 32 1 0.6673 -1.6481 2.1438 33 1 -0.0257 -5.3113 3.1897 34 1 -0.1822 -4.0015 1.9947 35 1 -3.2658 -2.3920 5.0812 36 1 3.3723 -4.4661 4.1420 37 1 1.9410 -5.4366 4.5638 38 1 2.1580 -6.6833 2.4314 39 1 3.5892 -5.7128 2.0096 40 1 4.7510 -6.5473 4.0356 41 1 3.3194 -7.5174 4.4568 42 1 6.1344 -7.1797 2.1946 43 1 5.6096 -8.4732 1.0899 44 1 4.7424 -6.9193 1.1163 45 1 4.3127 -9.6492 4.2544 46 1 5.3668 -10.0203 2.8687 47 1 5.8766 -8.8178 4.0775 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354807482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:17 Heat of formation + Delta-G solvation = -37.319007 kcal Electronic energy + Delta-G solvation = -23026.118360 eV Core-core repulsion = 19822.665972 eV Total energy + Delta-G solvation = -3203.452389 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.99006 -38.91546 -38.42132 -36.83919 -34.74507 -33.26681 -30.70294 -29.79401 -29.02675 -28.50464 -26.90530 -24.47652 -23.89944 -22.40666 -21.80491 -20.71392 -19.60600 -19.05460 -18.09515 -17.31960 -16.71947 -16.53255 -16.17832 -16.06160 -15.75831 -15.47716 -14.99344 -14.72290 -14.53630 -14.16638 -14.08144 -13.76556 -13.56074 -13.33272 -13.29113 -12.97262 -12.95039 -12.83394 -12.61788 -12.48405 -12.44880 -12.33820 -12.21803 -12.07666 -11.89049 -11.68446 -11.52101 -10.85729 -10.80210 -10.69802 -10.52140 -9.43740 -9.34727 -8.28281 -6.35297 1.42318 1.43019 1.51887 1.76372 2.24804 2.35831 2.89134 3.03628 3.06190 3.67798 3.80127 3.93418 4.03237 4.08507 4.14617 4.21170 4.37351 4.40482 4.46248 4.47960 4.51531 4.60753 4.64082 4.69890 4.71469 4.76944 4.79148 4.87719 4.93838 4.95214 4.98130 5.00556 5.01863 5.03900 5.13927 5.22881 5.26633 5.36841 5.46265 5.48745 5.74080 6.02332 6.09714 6.20214 6.60822 6.71624 7.26291 7.37289 8.87895 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010688 B = 0.005695 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.109689 B = 4915.067694 C = 6891.305201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.144 4.144 3 H 0.114 0.886 4 C -0.162 4.162 5 C -0.156 4.156 6 H 0.093 0.907 7 C -0.096 4.096 8 C 0.516 3.484 9 O -0.591 6.591 10 N -0.597 5.597 11 C 0.218 3.782 12 C -0.540 4.540 13 H 0.028 0.972 14 C 0.024 3.976 15 N -0.940 5.940 16 Si 0.937 3.063 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.237 1.237 20 C 0.120 3.880 21 C -0.113 4.113 22 C 0.064 3.936 23 N -0.561 5.561 24 C 0.023 3.977 25 C 0.024 3.976 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.268 0.732 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.031 0.969 41 H 0.085 0.915 42 H 0.024 0.976 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.794 -7.209 -9.902 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.162 4.162 3 H 0.132 0.868 4 C -0.199 4.199 5 C -0.174 4.174 6 H 0.112 0.888 7 C -0.136 4.136 8 C 0.306 3.694 9 O -0.473 6.473 10 N -0.327 5.327 11 C 0.096 3.904 12 C -0.579 4.579 13 H 0.046 0.954 14 C -0.176 4.176 15 N -0.580 5.580 16 Si 0.760 3.240 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.160 1.160 20 C -0.004 4.004 21 C -0.152 4.152 22 C -0.065 4.065 23 N -0.285 5.285 24 C -0.125 4.125 25 C -0.124 4.124 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.103 0.897 42 H 0.042 0.958 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 8.828 -7.305 -10.050 15.242 hybrid contribution 0.003 0.337 0.817 0.883 sum 8.831 -6.968 -9.234 14.553 Atomic orbital electron populations 1.21380 0.92541 1.02645 1.01644 1.22474 0.95682 0.94482 1.03603 0.86806 1.23228 1.02759 1.01303 0.92566 1.22032 1.00555 1.00002 0.94839 0.88846 1.21083 0.97521 0.95719 0.99260 1.20877 0.88237 0.80936 0.79372 1.90546 1.16372 1.73979 1.66431 1.47982 1.08303 1.29344 1.47034 1.19637 0.76492 0.97255 0.97025 1.21475 0.92012 1.26944 1.17437 0.95354 1.25735 0.99326 0.96110 0.96395 1.70055 1.12259 1.37224 1.38428 0.85891 0.78170 0.79166 0.80781 1.18918 1.21097 1.16005 1.21338 0.94324 0.90495 0.94227 1.21757 0.99684 0.95279 0.98441 1.21982 0.97667 0.91630 0.95183 1.61978 1.39525 1.11954 1.15057 1.22429 0.94440 1.00524 0.95131 1.22435 0.97756 0.94240 0.97923 0.93469 0.90484 0.92313 0.87821 0.88186 0.88309 0.89295 0.93644 0.93532 0.92271 0.92355 0.90047 0.91268 0.92953 0.95030 0.89689 0.95785 0.89924 0.92244 0.90752 0.90157 0.95499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.19 71.98 0.66 -2.55 16 2 C -0.14 -3.79 6.41 -10.79 -0.07 -3.86 16 3 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 4 C -0.16 -4.11 9.82 30.59 0.30 -3.81 16 5 C -0.16 -5.05 5.42 -10.80 -0.06 -5.11 16 6 H 0.09 3.39 7.30 -2.38 -0.02 3.37 16 7 C -0.10 -3.56 3.67 29.85 0.11 -3.45 16 8 C 0.52 21.59 7.60 87.66 0.67 22.26 16 9 O -0.59 -26.77 15.22 -3.04 -0.05 -26.82 16 10 N -0.60 -24.46 2.48 -826.14 -2.05 -26.51 16 11 C 0.22 9.33 3.99 85.63 0.34 9.67 16 12 C -0.54 -28.56 9.35 25.60 0.24 -28.33 16 13 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 14 C 0.02 1.26 5.47 84.66 0.46 1.72 16 15 N -0.94 -55.26 13.96 21.45 0.30 -54.96 16 16 Si 0.94 39.40 27.47 68.60 1.88 41.28 16 17 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 18 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.24 -8.86 6.58 99.48 0.65 -8.21 16 20 C 0.12 4.30 5.34 86.38 0.46 4.76 16 21 C -0.11 -3.42 5.43 30.59 0.17 -3.26 16 22 C 0.06 1.63 4.96 86.30 0.43 2.06 16 23 N -0.56 -13.16 5.02 -948.86 -4.76 -17.92 16 24 C 0.02 0.50 9.32 127.69 1.19 1.69 16 25 C 0.02 0.44 9.57 127.69 1.22 1.66 16 26 H 0.05 1.40 7.83 -2.39 -0.02 1.38 16 27 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.06 1.46 7.90 -2.39 -0.02 1.44 16 29 H 0.10 2.32 8.14 -2.38 -0.02 2.31 16 30 H 0.10 2.36 7.94 -2.38 -0.02 2.35 16 31 H 0.10 3.29 7.14 -2.39 -0.02 3.27 16 32 H 0.09 3.71 7.23 -2.39 -0.02 3.69 16 33 H 0.05 1.83 7.57 -2.38 -0.02 1.81 16 34 H 0.05 1.89 5.62 -2.39 -0.01 1.88 16 35 H 0.27 14.75 8.31 -92.71 -0.77 13.97 16 36 H 0.06 2.21 7.57 -2.38 -0.02 2.19 16 37 H 0.08 2.84 8.04 -2.38 -0.02 2.82 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 39 H 0.05 1.74 6.55 -2.39 -0.02 1.72 16 40 H 0.03 0.82 8.12 -2.38 -0.02 0.80 16 41 H 0.08 2.00 8.06 -2.39 -0.02 1.98 16 42 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 44 H 0.06 1.45 6.47 -2.39 -0.02 1.43 16 45 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 46 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 47 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -64.05 373.42 2.31 -61.75 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.85 Total: 29.71 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 6.12 Total: -6.53 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -6.51 Total: -99.39 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.82 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.88 Total: 41.28 kcal Total: -64.05 2.31 -61.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354807482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.427 kcal (2) G-P(sol) polarization free energy of solvation -64.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds