Wall clock time and date at job start Tue Mar 31 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 115.54867 * 2 1 4 4 C 1.52999 * 117.50101 * 214.33387 * 2 1 3 5 5 C 1.52996 * 117.50050 * 145.67246 * 2 1 3 6 6 H 1.09004 * 117.49890 * 359.97438 * 5 2 1 7 7 C 1.53008 * 117.50032 * 215.00485 * 5 2 1 8 8 C 1.50691 * 109.47432 * 174.99724 * 7 5 2 9 9 O 1.21283 * 119.99943 * 0.02562 * 8 7 5 10 10 N 1.34777 * 120.00144 * 179.97438 * 8 7 5 11 11 C 1.46502 * 120.00112 * 0.02562 * 10 8 7 12 12 C 1.50697 * 109.47312 * 89.99444 * 11 10 8 13 13 H 1.08006 * 119.99833 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00145 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00181 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00116 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46786 * 60.00344 * 16 14 12 18 18 H 1.48495 * 109.47077 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47109 * 300.00409 * 16 14 12 20 20 C 1.46506 * 120.00017 * 179.97438 * 10 8 7 21 21 C 1.52998 * 109.47064 * 90.00307 * 20 10 8 22 22 C 1.53000 * 109.47114 * 180.02562 * 21 20 10 23 23 N 1.46896 * 109.46845 * 179.97438 * 22 21 20 24 24 C 1.46908 * 110.99777 * 169.99725 * 23 22 21 25 25 C 1.46905 * 111.00270 * 293.95023 * 23 22 21 26 26 H 1.09002 * 109.47153 * 274.41543 * 1 2 3 27 27 H 1.09001 * 109.46832 * 154.41734 * 1 2 3 28 28 H 1.09004 * 109.47261 * 34.41715 * 1 2 3 29 29 H 1.08998 * 117.49862 * 359.97438 * 4 2 1 30 30 H 1.09000 * 117.50295 * 145.02180 * 4 2 1 31 31 H 1.09006 * 109.46715 * 294.99699 * 7 5 2 32 32 H 1.09000 * 109.46797 * 54.99388 * 7 5 2 33 33 H 1.08995 * 109.47183 * 210.00129 * 11 10 8 34 34 H 1.09001 * 109.46674 * 329.99838 * 11 10 8 35 35 H 0.96994 * 120.00515 * 179.97438 * 15 14 12 36 36 H 1.08996 * 109.46842 * 210.00165 * 20 10 8 37 37 H 1.08995 * 109.46748 * 330.00346 * 20 10 8 38 38 H 1.09007 * 109.47079 * 300.00105 * 21 20 10 39 39 H 1.08997 * 109.47388 * 59.99605 * 21 20 10 40 40 H 1.08996 * 109.46775 * 299.99846 * 22 21 20 41 41 H 1.08995 * 109.46766 * 59.99997 * 22 21 20 42 42 H 1.09002 * 109.46988 * 60.00129 * 24 23 22 43 43 H 1.09008 * 109.47091 * 179.97438 * 24 23 22 44 44 H 1.08990 * 109.47023 * 300.00066 * 24 23 22 45 45 H 1.08997 * 109.46561 * 60.00574 * 25 23 22 46 46 H 1.09000 * 109.47360 * 180.02562 * 25 23 22 47 47 H 1.09002 * 109.47096 * 300.00477 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2364 -1.1207 0.7653 6 1 1.6112 -1.8579 1.2692 7 6 3.5487 -0.7753 1.4722 8 6 4.0215 -1.9669 2.2643 9 8 3.3729 -2.9917 2.2633 10 7 5.1655 -1.8941 2.9731 11 6 5.9492 -0.6563 2.9740 12 6 5.4889 0.2290 4.1033 13 1 4.6925 -0.0979 4.7555 14 6 6.0852 1.4557 4.3046 15 7 7.0553 1.8535 3.5108 16 14 5.5151 2.5528 5.7050 17 1 5.7050 1.8453 6.9967 18 1 6.3094 3.8074 5.7057 19 1 4.0773 2.8778 5.5253 20 6 5.6247 -3.0524 3.7437 21 6 6.5246 -3.9246 2.8660 22 6 7.0037 -5.1346 3.6705 23 7 7.8671 -5.9722 2.8275 24 6 8.5349 -7.0096 3.6251 25 6 7.1054 -6.5675 1.7214 26 1 -0.3633 0.0791 1.0246 27 1 -0.3633 -0.9269 -0.4438 28 1 -0.3634 0.8478 -0.5809 29 1 1.6113 -1.8582 -1.2687 30 1 3.1716 -0.8747 -1.2686 31 1 4.3021 -0.5101 0.7303 32 1 3.3883 0.0676 2.1445 33 1 7.0046 -0.8946 3.1060 34 1 5.8097 -0.1374 2.0256 35 1 7.4745 2.7167 3.6521 36 1 6.1862 -2.7108 4.6132 37 1 4.7638 -3.6343 4.0727 38 1 5.9630 -4.2661 1.9963 39 1 7.3854 -3.3426 2.5368 40 1 7.5650 -4.7933 4.5402 41 1 6.1425 -5.7163 3.9992 42 1 7.7848 -7.6445 4.0967 43 1 9.1675 -7.6157 2.9764 44 1 9.1476 -6.5387 4.3937 45 1 6.6790 -5.7752 1.1062 46 1 7.7685 -7.1830 1.1134 47 1 6.3035 -7.1863 2.1240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354807483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:20 Heat of formation + Delta-G solvation = -26.295957 kcal Electronic energy + Delta-G solvation = -22749.119150 eV Core-core repulsion = 19546.144757 eV Total energy + Delta-G solvation = -3202.974393 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.29512 -37.71869 -37.18563 -35.07501 -32.92838 -31.63987 -29.88351 -27.62916 -27.48209 -27.23924 -25.48435 -22.96714 -22.61070 -21.03001 -20.57487 -19.90265 -18.20278 -16.60104 -16.20665 -15.84479 -15.40762 -15.15169 -14.80106 -14.58034 -14.29032 -14.14142 -13.94234 -13.50771 -12.98123 -12.60896 -12.47723 -12.31389 -12.19730 -12.10708 -11.76850 -11.75642 -11.61235 -11.44256 -11.24686 -11.18504 -11.09692 -10.92731 -10.87429 -10.62185 -10.24004 -10.06255 -9.74474 -9.69337 -9.45073 -8.93401 -8.54653 -8.33300 -7.68460 -6.17675 -4.25360 3.24440 3.29596 3.31682 3.48277 3.81865 4.03032 4.17918 4.34231 4.93414 5.10193 5.14274 5.15807 5.16712 5.18827 5.30326 5.38893 5.46950 5.54384 5.61899 5.65748 5.73295 5.79375 5.79853 5.86020 5.89698 5.91655 5.98167 6.02990 6.11861 6.14975 6.16025 6.20758 6.41308 6.49247 6.52561 6.64749 6.73369 6.84813 7.05434 7.08388 7.20909 7.58054 7.77360 8.06894 8.38889 8.80413 9.08143 9.42841 10.88874 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.008934 B = 0.005688 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.250523 B = 4921.672978 C = 7543.649581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.160 4.160 3 H 0.104 0.896 4 C -0.178 4.178 5 C -0.126 4.126 6 H 0.113 0.887 7 C -0.106 4.106 8 C 0.520 3.480 9 O -0.577 6.577 10 N -0.595 5.595 11 C 0.238 3.762 12 C -0.539 4.539 13 H 0.060 0.940 14 C 0.066 3.934 15 N -0.891 5.891 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.123 3.877 21 C -0.128 4.128 22 C 0.059 3.941 23 N -0.548 5.548 24 C 0.025 3.975 25 C 0.022 3.978 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.266 0.734 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.022 0.978 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.038 -9.433 -4.240 10.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.178 4.178 3 H 0.122 0.878 4 C -0.215 4.215 5 C -0.145 4.145 6 H 0.131 0.869 7 C -0.145 4.145 8 C 0.309 3.691 9 O -0.459 6.459 10 N -0.325 5.325 11 C 0.118 3.882 12 C -0.577 4.577 13 H 0.078 0.922 14 C -0.137 4.137 15 N -0.529 5.529 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.002 4.002 21 C -0.167 4.167 22 C -0.069 4.069 23 N -0.272 5.272 24 C -0.123 4.123 25 C -0.126 4.126 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.844 -9.486 -4.465 10.863 hybrid contribution -0.640 0.286 1.146 1.343 sum -3.484 -9.200 -3.319 10.383 Atomic orbital electron populations 1.21329 0.93261 1.01369 1.01685 1.22412 0.94939 0.94900 1.05591 0.87829 1.23173 1.02306 1.01163 0.94856 1.22218 0.98308 1.00855 0.93102 0.86896 1.21178 0.95623 0.97985 0.99713 1.20418 0.80345 0.88887 0.79475 1.90558 1.56759 1.32704 1.65880 1.48198 1.23273 1.14718 1.46337 1.19423 0.91350 0.79600 0.97842 1.21465 1.19930 1.01901 1.14428 0.92182 1.24932 0.94708 0.97668 0.96411 1.69910 1.24010 1.21189 1.37819 0.86587 0.78861 0.79721 0.82495 1.20159 1.21152 1.20074 1.21172 0.97659 0.87298 0.94042 1.21943 0.99986 0.95639 0.99155 1.22082 0.94782 0.94251 0.95814 1.61975 1.31753 1.21771 1.11681 1.22369 0.98294 0.93987 0.97682 1.22425 0.96578 0.99170 0.94416 0.92292 0.92845 0.92547 0.89311 0.89105 0.89351 0.87527 0.94593 0.94408 0.92463 0.90531 0.91333 0.91923 0.90926 0.90631 0.94871 0.95930 0.91640 0.91350 0.90849 0.91786 0.95805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 10.19 37.16 0.38 -1.03 16 2 C -0.16 -2.21 6.12 -90.62 -0.56 -2.77 16 3 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 4 C -0.18 -2.49 9.83 -26.69 -0.26 -2.75 16 5 C -0.13 -2.06 5.14 -90.58 -0.47 -2.53 16 6 H 0.11 2.00 7.31 -51.93 -0.38 1.62 16 7 C -0.11 -1.95 4.53 -27.88 -0.13 -2.08 16 8 C 0.52 10.88 7.67 -10.99 -0.08 10.79 16 9 O -0.58 -12.97 15.14 5.55 0.08 -12.89 16 10 N -0.60 -12.52 2.46 -175.06 -0.43 -12.95 16 11 C 0.24 5.59 4.97 -5.19 -0.03 5.56 16 12 C -0.54 -13.86 9.28 -34.44 -0.32 -14.18 16 13 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 14 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -24.38 13.29 55.43 0.74 -23.64 16 16 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 C 0.12 2.27 5.41 -4.04 -0.02 2.25 16 21 C -0.13 -2.11 5.46 -26.73 -0.15 -2.25 16 22 C 0.06 0.83 4.96 -3.83 -0.02 0.81 16 23 N -0.55 -7.28 5.02 -251.26 -1.26 -8.54 16 24 C 0.03 0.27 9.57 60.07 0.57 0.84 16 25 C 0.02 0.27 9.32 60.07 0.56 0.83 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.59 7.90 -51.93 -0.41 0.18 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 30 H 0.09 1.23 8.03 -51.93 -0.42 0.81 16 31 H 0.09 1.58 7.14 -51.93 -0.37 1.21 16 32 H 0.11 2.10 8.00 -51.93 -0.42 1.69 16 33 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.04 0.91 6.44 -51.93 -0.33 0.58 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 37 H 0.07 1.29 7.42 -51.93 -0.39 0.90 16 38 H 0.06 1.09 6.55 -51.92 -0.34 0.75 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 41 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 42 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.06 0.61 8.12 -51.92 -0.42 0.19 16 44 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 45 H 0.07 0.96 6.47 -51.93 -0.34 0.63 16 46 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 47 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -28.32 379.65 -9.61 -37.93 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -8.83 Total: 3.83 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.61 Total: -4.87 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.95 Total: -45.13 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.32 -9.61 -37.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354807483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.634 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds