Wall clock time and date at job start Tue Mar 31 2020 06:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 115.56615 * 2 1 4 4 C 1.53008 * 117.49394 * 145.69011 * 2 1 3 5 5 C 1.52997 * 59.99983 * 107.48767 * 4 2 1 6 6 H 1.09000 * 117.50123 * 252.48489 * 5 4 2 7 7 C 1.53002 * 117.50020 * 107.48873 * 5 4 2 8 8 C 1.50699 * 109.47325 * 116.39192 * 7 5 4 9 9 O 1.21289 * 119.99657 * 359.97438 * 8 7 5 10 10 N 1.34776 * 120.00508 * 180.02562 * 8 7 5 11 11 C 1.46503 * 119.99393 * 359.97438 * 10 8 7 12 12 C 1.50699 * 109.46825 * 269.99942 * 11 10 8 13 13 H 1.07999 * 120.00803 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99889 * 180.02562 * 12 11 10 15 15 N 1.31520 * 120.00186 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00030 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 C 1.46494 * 120.00583 * 179.97438 * 10 8 7 21 21 C 1.52999 * 109.47156 * 269.99942 * 20 10 8 22 22 C 1.52993 * 109.47371 * 179.97438 * 21 20 10 23 23 N 1.46898 * 109.47364 * 179.97438 * 22 21 20 24 24 C 1.46906 * 111.00258 * 169.99887 * 23 22 21 25 25 C 1.46899 * 111.00238 * 293.95618 * 23 22 21 26 26 H 1.08996 * 109.47276 * 205.69225 * 1 2 3 27 27 H 1.09004 * 109.46917 * 325.69224 * 1 2 3 28 28 H 1.09000 * 109.46961 * 85.68983 * 1 2 3 29 29 H 1.08994 * 117.50142 * 359.97438 * 4 2 1 30 30 H 1.08999 * 117.51290 * 214.96660 * 4 2 1 31 31 H 1.09002 * 109.47057 * 356.38956 * 7 5 4 32 32 H 1.09005 * 109.47064 * 236.39041 * 7 5 4 33 33 H 1.09004 * 109.46958 * 150.00353 * 11 10 8 34 34 H 1.08997 * 109.47731 * 30.00029 * 11 10 8 35 35 H 0.96998 * 120.00124 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.46862 * 29.99455 * 20 10 8 37 37 H 1.08990 * 109.47708 * 149.99604 * 20 10 8 38 38 H 1.09005 * 109.47311 * 299.99762 * 21 20 10 39 39 H 1.09006 * 109.47006 * 59.99710 * 21 20 10 40 40 H 1.09000 * 109.47502 * 299.99815 * 22 21 20 41 41 H 1.09004 * 109.47437 * 59.99726 * 22 21 20 42 42 H 1.08997 * 109.46801 * 60.00101 * 24 23 22 43 43 H 1.09003 * 109.47377 * 179.97438 * 24 23 22 44 44 H 1.08998 * 109.47077 * 300.00172 * 24 23 22 45 45 H 1.08994 * 109.47078 * 59.99484 * 25 23 22 46 46 H 1.08995 * 109.47656 * 180.02562 * 25 23 22 47 47 H 1.09006 * 109.46866 * 300.00142 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2363 -1.1211 0.7650 5 6 2.2363 -1.1211 -0.7649 6 1 1.6114 -1.8588 -1.2683 7 6 3.5489 -0.7761 -1.4714 8 6 4.0214 -1.9679 -2.2635 9 8 3.3724 -2.9925 -2.2627 10 7 5.1656 -1.8956 -2.9721 11 6 5.9498 -0.6581 -2.9726 12 6 5.4901 0.2274 -4.1021 13 1 4.6933 -0.0988 -4.7541 14 6 6.0869 1.4540 -4.3031 15 7 5.6854 2.2270 -5.2886 16 14 7.4655 2.0179 -3.1759 17 1 8.7700 1.5711 -3.7274 18 1 7.2721 1.4313 -1.8254 19 1 7.4507 3.4997 -3.0786 20 6 5.6252 -3.0542 -3.7417 21 6 6.5248 -3.9258 -2.8631 22 6 7.0042 -5.1362 -3.6666 23 7 7.8685 -5.9728 -2.8232 24 6 8.1559 -7.2575 -3.4750 25 6 9.1103 -5.2675 -2.4792 26 1 -0.3633 -0.9260 0.4455 27 1 -0.3633 0.8489 0.5793 28 1 -0.3633 0.0772 -1.0248 29 1 1.6111 -1.8583 1.2686 30 1 3.1715 -0.8757 1.2683 31 1 4.3022 -0.5112 -0.7294 32 1 3.3890 0.0668 -2.1437 33 1 7.0051 -0.8968 -3.1044 34 1 5.8103 -0.1391 -2.0243 35 1 6.1055 3.0897 -5.4302 36 1 4.7644 -3.6365 -4.0706 37 1 6.1869 -2.7133 -4.6113 38 1 7.3856 -3.3436 -2.5341 39 1 5.9629 -4.2668 -1.9935 40 1 6.1433 -5.7184 -3.9952 41 1 7.5659 -4.7956 -4.5365 42 1 8.6613 -7.0784 -4.4240 43 1 8.7978 -7.8570 -2.8294 44 1 7.2223 -7.7903 -3.6555 45 1 8.8705 -4.3536 -1.9358 46 1 9.7318 -5.9094 -1.8549 47 1 9.6503 -5.0163 -3.3922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354807485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:23 Heat of formation + Delta-G solvation = -21.182767 kcal Electronic energy + Delta-G solvation = -22791.721039 eV Core-core repulsion = 19588.968371 eV Total energy + Delta-G solvation = -3202.752669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.38897 -37.77589 -37.23917 -35.18795 -32.89974 -31.78366 -29.93686 -28.01920 -27.63250 -27.43598 -25.57817 -22.71372 -22.55277 -21.05929 -20.64018 -19.93481 -18.21992 -17.05842 -16.38277 -15.87982 -15.45112 -15.25353 -14.88441 -14.59615 -14.25990 -14.06895 -13.97593 -13.65317 -12.99795 -12.77207 -12.55142 -12.39332 -12.31768 -12.10300 -11.97715 -11.94161 -11.78944 -11.55416 -11.30851 -11.21699 -11.12908 -10.96283 -10.93121 -10.63697 -10.32196 -10.14201 -9.72292 -9.64303 -9.48612 -9.00037 -8.73931 -8.38622 -7.74075 -6.23608 -4.25240 3.15065 3.22874 3.24507 3.40464 3.72009 3.99104 4.11866 4.24207 4.89054 5.04743 5.06567 5.10555 5.12388 5.14179 5.24376 5.33543 5.44040 5.49898 5.54020 5.60835 5.65209 5.73348 5.75498 5.81209 5.85912 5.89265 5.94906 5.95740 6.03222 6.09009 6.13053 6.16179 6.36507 6.41789 6.47648 6.48389 6.56589 6.67729 6.73927 6.99723 7.02226 7.36891 7.43085 8.14467 8.41121 8.81867 8.98201 9.35950 10.89059 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.009369 B = 0.005723 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.760437 B = 4891.507435 C = 7142.905711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.159 4.159 3 H 0.103 0.897 4 C -0.178 4.178 5 C -0.126 4.126 6 H 0.115 0.885 7 C -0.109 4.109 8 C 0.523 3.477 9 O -0.569 6.569 10 N -0.592 5.592 11 C 0.209 3.791 12 C -0.541 4.541 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.891 5.891 16 Si 0.871 3.129 17 H -0.274 1.274 18 H -0.264 1.264 19 H -0.283 1.283 20 C 0.122 3.878 21 C -0.129 4.129 22 C 0.058 3.942 23 N -0.549 5.549 24 C 0.025 3.975 25 C 0.021 3.979 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.027 0.973 34 H 0.034 0.966 35 H 0.266 0.734 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.035 0.965 42 H 0.023 0.977 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.221 -9.674 7.850 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.177 4.177 3 H 0.121 0.879 4 C -0.215 4.215 5 C -0.145 4.145 6 H 0.133 0.867 7 C -0.148 4.148 8 C 0.312 3.688 9 O -0.449 6.449 10 N -0.322 5.322 11 C 0.087 3.913 12 C -0.579 4.579 13 H 0.097 0.903 14 C -0.127 4.127 15 N -0.528 5.528 16 Si 0.697 3.303 17 H -0.200 1.200 18 H -0.189 1.189 19 H -0.209 1.209 20 C -0.002 4.002 21 C -0.168 4.168 22 C -0.070 4.070 23 N -0.273 5.273 24 C -0.123 4.123 25 C -0.127 4.127 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.686 -10.105 8.180 13.019 hybrid contribution 1.448 0.776 -0.365 1.682 sum 2.134 -9.329 7.815 12.356 Atomic orbital electron populations 1.21329 0.93162 1.01382 1.01808 1.22412 0.95056 0.94811 1.05454 0.87856 1.23167 1.02279 1.01254 0.94840 1.22192 0.98210 1.00989 0.93073 0.86736 1.21219 0.95743 0.98181 0.99673 1.20391 0.80132 0.88937 0.79350 1.90582 1.56270 1.32580 1.65499 1.47867 1.23331 1.14042 1.46919 1.19796 0.91363 0.81944 0.98151 1.21396 1.21335 1.01359 1.13813 0.90350 1.24881 0.96587 0.96255 0.94993 1.69893 1.41903 1.11025 1.29983 0.86936 0.82984 0.78520 0.81830 1.19978 1.18851 1.20854 1.21206 0.98067 0.87101 0.93857 1.21953 0.99813 0.95230 0.99778 1.22081 0.96498 0.94421 0.93985 1.61972 1.16219 1.04608 1.44456 1.22367 1.01334 0.91582 0.97052 1.22436 0.90855 0.99476 0.99946 0.92816 0.92534 0.92172 0.89222 0.89219 0.89594 0.87182 0.95465 0.94788 0.92361 0.90743 0.90520 0.91994 0.90989 0.90637 0.94643 0.95812 0.91631 0.91388 0.90884 0.91750 0.95662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 10.19 37.15 0.38 -1.03 16 2 C -0.16 -2.17 6.13 -90.62 -0.56 -2.72 16 3 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 4 C -0.18 -2.43 9.82 -26.73 -0.26 -2.70 16 5 C -0.13 -2.03 5.13 -90.62 -0.47 -2.50 16 6 H 0.11 2.02 7.30 -51.93 -0.38 1.64 16 7 C -0.11 -1.96 4.53 -27.88 -0.13 -2.09 16 8 C 0.52 10.73 7.67 -10.99 -0.08 10.65 16 9 O -0.57 -12.65 15.14 5.55 0.08 -12.56 16 10 N -0.59 -12.06 2.46 -175.06 -0.43 -12.49 16 11 C 0.21 4.55 4.03 -5.19 -0.02 4.53 16 12 C -0.54 -14.06 9.84 -34.44 -0.34 -14.40 16 13 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 14 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.89 -25.65 13.96 55.43 0.77 -24.88 16 16 Si 0.87 19.59 27.47 -169.99 -4.67 14.92 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.12 2.19 5.41 -4.05 -0.02 2.17 16 21 C -0.13 -2.01 5.46 -26.74 -0.15 -2.16 16 22 C 0.06 0.79 4.96 -3.83 -0.02 0.77 16 23 N -0.55 -6.98 5.02 -251.26 -1.26 -8.24 16 24 C 0.03 0.26 9.57 60.07 0.57 0.83 16 25 C 0.02 0.24 9.32 60.06 0.56 0.80 16 26 H 0.05 0.59 7.90 -51.93 -0.41 0.18 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 30 H 0.09 1.16 8.03 -51.93 -0.42 0.75 16 31 H 0.09 1.44 7.13 -51.93 -0.37 1.07 16 32 H 0.11 2.14 8.00 -51.93 -0.42 1.72 16 33 H 0.03 0.58 7.50 -51.93 -0.39 0.19 16 34 H 0.03 0.72 5.50 -51.93 -0.29 0.44 16 35 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.07 1.37 7.42 -51.93 -0.39 0.99 16 37 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 38 H 0.06 0.96 6.55 -51.93 -0.34 0.62 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 41 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 42 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 44 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 45 H 0.07 0.88 6.47 -51.93 -0.34 0.54 16 46 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 47 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -29.45 376.03 -9.26 -38.71 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -8.80 Total: 4.76 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -0.62 Total: -5.89 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: -0.92 Total: -45.60 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.67 Total: 14.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.45 -9.26 -38.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354807485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.525 kcal (2) G-P(sol) polarization free energy of solvation -29.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds