Wall clock time and date at job start Tue Mar 31 2020 06:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 115.56414 * 2 1 4 4 C 1.53079 * 117.51209 * 145.68942 * 2 1 3 5 5 C 1.52999 * 117.50243 * 214.30020 * 2 1 3 6 6 H 1.08994 * 117.49912 * 145.00482 * 5 2 1 7 7 C 1.53002 * 117.49478 * 0.02562 * 5 2 1 8 8 C 1.50704 * 109.46893 * 175.08727 * 7 5 2 9 9 O 1.21280 * 120.00103 * 359.97438 * 8 7 5 10 10 N 1.34777 * 119.99819 * 180.02562 * 8 7 5 11 11 C 1.46500 * 120.00124 * 359.97438 * 10 8 7 12 12 C 1.50706 * 109.46949 * 270.00237 * 11 10 8 13 13 H 1.07995 * 120.00167 * 359.72205 * 12 11 10 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 C 1.46494 * 119.99857 * 180.02562 * 10 8 7 21 21 C 1.53000 * 109.47257 * 269.99930 * 20 10 8 22 22 C 1.52998 * 109.47484 * 180.02562 * 21 20 10 23 23 N 1.46898 * 109.47562 * 179.97438 * 22 21 20 24 24 C 1.46890 * 111.00377 * 169.99980 * 23 22 21 25 25 C 1.46907 * 110.99505 * 293.95420 * 23 22 21 26 26 H 1.08998 * 109.47406 * 205.69867 * 1 2 3 27 27 H 1.08999 * 109.47337 * 325.70024 * 1 2 3 28 28 H 1.09007 * 109.46706 * 85.69758 * 1 2 3 29 29 H 1.09005 * 117.51229 * 0.02562 * 4 2 1 30 30 H 1.09001 * 117.51392 * 214.95624 * 4 2 1 31 31 H 1.08992 * 109.47088 * 55.08517 * 7 5 2 32 32 H 1.09003 * 109.47073 * 295.08254 * 7 5 2 33 33 H 1.09000 * 109.47175 * 150.00263 * 11 10 8 34 34 H 1.09001 * 109.47297 * 29.99770 * 11 10 8 35 35 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47567 * 29.99871 * 20 10 8 37 37 H 1.09002 * 109.47279 * 149.99319 * 20 10 8 38 38 H 1.09001 * 109.46925 * 299.99888 * 21 20 10 39 39 H 1.08999 * 109.46913 * 59.99997 * 21 20 10 40 40 H 1.09001 * 109.46857 * 299.99818 * 22 21 20 41 41 H 1.09005 * 109.46927 * 59.99656 * 22 21 20 42 42 H 1.09006 * 109.47296 * 59.99919 * 24 23 22 43 43 H 1.08998 * 109.47424 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.47157 * 299.99744 * 24 23 22 45 45 H 1.09001 * 109.47153 * 59.99899 * 25 23 22 46 46 H 1.09002 * 109.46761 * 179.97438 * 25 23 22 47 47 H 1.08995 * 109.47406 * 299.99316 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1214 0.7653 5 6 2.2365 -1.1211 -0.7648 6 1 3.1714 -0.8753 -1.2683 7 6 1.3589 -2.1561 -1.4715 8 6 2.2304 -3.0982 -2.2614 9 8 3.4348 -2.9556 -2.2597 10 7 1.6713 -4.0987 -2.9706 11 6 0.2164 -4.2706 -2.9732 12 6 -0.1833 -5.1857 -1.8444 13 1 0.5714 -5.6015 -1.1934 14 6 -1.5120 -5.4961 -1.6463 15 7 -2.4304 -4.9941 -2.4425 16 14 -2.0075 -6.6298 -0.2467 17 1 -0.7953 -7.0573 0.4969 18 1 -2.9246 -5.9096 0.6727 19 1 -2.6965 -7.8244 -0.7977 20 6 2.5185 -5.0149 -3.7380 21 6 2.7139 -4.4651 -5.1523 22 6 3.5982 -5.4222 -5.9540 23 7 3.7854 -4.8946 -7.3122 24 6 4.8131 -5.6551 -8.0354 25 6 2.5170 -4.8870 -8.0533 26 1 -0.3634 -0.9260 0.4456 27 1 -0.3634 0.8489 0.5791 28 1 -0.3633 0.0771 -1.0249 29 1 1.6123 -1.8594 1.2684 30 1 3.1724 -0.8758 1.2682 31 1 0.6690 -1.6481 -2.1453 32 1 0.7932 -2.7200 -0.7298 33 1 -0.0963 -4.7062 -3.9222 34 1 -0.2643 -3.3011 -2.8424 35 1 -3.3651 -5.2128 -2.3033 36 1 3.4875 -5.1102 -3.2482 37 1 2.0407 -5.9932 -3.7912 38 1 1.7449 -4.3699 -5.6423 39 1 3.1918 -3.4869 -5.0990 40 1 4.5673 -5.5178 -5.4643 41 1 3.1199 -6.4003 -6.0073 42 1 4.5104 -6.7000 -8.1050 43 1 4.9312 -5.2439 -9.0379 44 1 5.7602 -5.5861 -7.5002 45 1 1.7947 -4.2596 -7.5310 46 1 2.6840 -4.4914 -9.0552 47 1 2.1311 -5.9040 -8.1236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354807486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:26 Heat of formation + Delta-G solvation = -25.712943 kcal Electronic energy + Delta-G solvation = -22918.462503 eV Core-core repulsion = 19715.513391 eV Total energy + Delta-G solvation = -3202.949112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.30891 -37.73585 -37.19359 -35.06826 -32.93516 -31.60946 -29.31410 -27.86389 -27.58290 -27.32514 -25.55683 -22.99152 -22.59148 -21.19064 -20.62390 -19.36914 -18.02510 -16.72013 -16.33941 -15.76706 -15.47549 -15.15921 -14.98314 -14.59006 -14.37920 -14.07057 -13.70305 -13.31502 -13.03275 -12.62312 -12.43742 -12.34219 -12.17758 -12.05142 -11.77082 -11.64863 -11.59681 -11.39221 -11.23181 -11.16582 -11.11286 -10.92005 -10.87843 -10.61570 -10.27818 -10.03262 -9.72927 -9.56657 -9.43737 -8.93973 -8.56797 -8.32763 -7.67943 -6.20131 -4.27416 3.19500 3.28543 3.32521 3.50162 3.82690 4.07468 4.18376 4.33073 5.01870 5.08848 5.12486 5.14559 5.17345 5.23727 5.30515 5.39801 5.53101 5.57035 5.60050 5.67483 5.73103 5.79263 5.82390 5.90165 5.99647 6.03203 6.06113 6.08639 6.18593 6.19647 6.24397 6.27436 6.32059 6.53664 6.57844 6.65241 6.75657 6.84615 7.05677 7.08808 7.18950 7.58061 7.75619 8.05158 8.39138 8.79625 9.09676 9.41043 10.86393 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.005463 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.034370 B = 5124.369478 C = 7152.583730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.158 4.158 3 H 0.098 0.902 4 C -0.178 4.178 5 C -0.129 4.129 6 H 0.112 0.888 7 C -0.103 4.103 8 C 0.519 3.481 9 O -0.575 6.575 10 N -0.596 5.596 11 C 0.238 3.762 12 C -0.536 4.536 13 H 0.061 0.939 14 C 0.065 3.935 15 N -0.891 5.891 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.283 1.283 20 C 0.123 3.877 21 C -0.128 4.128 22 C 0.059 3.941 23 N -0.549 5.549 24 C 0.025 3.975 25 C 0.021 3.979 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.034 0.966 34 H 0.039 0.961 35 H 0.264 0.736 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.023 0.977 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.039 3.384 -4.168 8.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.176 4.176 3 H 0.116 0.884 4 C -0.214 4.214 5 C -0.147 4.147 6 H 0.130 0.870 7 C -0.143 4.143 8 C 0.308 3.692 9 O -0.456 6.456 10 N -0.326 5.326 11 C 0.118 3.882 12 C -0.575 4.575 13 H 0.079 0.921 14 C -0.138 4.138 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.002 4.002 21 C -0.167 4.167 22 C -0.069 4.069 23 N -0.272 5.272 24 C -0.123 4.123 25 C -0.127 4.127 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.591 3.919 -4.174 9.508 hybrid contribution -0.852 -1.617 0.625 1.932 sum 6.740 2.302 -3.549 7.957 Atomic orbital electron populations 1.21349 0.92852 1.01872 1.01963 1.22383 0.95408 0.94113 1.05736 0.88383 1.23151 1.02030 1.01484 0.94784 1.22182 1.00843 0.98255 0.93454 0.87010 1.21135 0.97516 0.95562 1.00044 1.20447 0.88204 0.81572 0.78966 1.90565 1.15484 1.73957 1.65617 1.48183 1.09704 1.28580 1.46178 1.19418 0.73220 0.97795 0.97792 1.21549 0.92476 1.29164 1.14323 0.92079 1.24933 0.96357 0.96047 0.96415 1.69929 1.01188 1.44126 1.37693 0.86500 0.78674 0.80584 0.82104 1.19660 1.20782 1.20880 1.21166 0.95579 0.93084 0.90342 1.21938 0.99527 0.99812 0.95404 1.22081 1.00240 0.96165 0.88442 1.61973 1.08383 1.54023 1.02861 1.22363 0.95632 0.95458 0.98874 1.22441 0.91564 1.00232 0.98473 0.92054 0.92787 0.92056 0.88788 0.89389 0.89091 0.87887 0.94810 0.94335 0.92593 0.91116 0.90793 0.91792 0.91107 0.90794 0.94734 0.95870 0.91648 0.91459 0.90736 0.91783 0.95667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.20 37.16 0.34 -1.30 16 2 C -0.16 -2.19 6.41 -90.58 -0.58 -2.77 16 3 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.18 -2.61 9.83 -26.69 -0.26 -2.87 16 5 C -0.13 -2.12 5.41 -90.62 -0.49 -2.61 16 6 H 0.11 1.96 7.31 -51.93 -0.38 1.58 16 7 C -0.10 -1.91 3.61 -27.88 -0.10 -2.01 16 8 C 0.52 10.91 7.67 -10.98 -0.08 10.83 16 9 O -0.57 -13.04 15.14 5.56 0.08 -12.95 16 10 N -0.60 -12.53 2.46 -175.06 -0.43 -12.96 16 11 C 0.24 5.54 4.97 -5.19 -0.03 5.52 16 12 C -0.54 -13.73 9.28 -34.44 -0.32 -14.05 16 13 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 14 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -24.15 13.29 55.43 0.74 -23.41 16 16 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.12 2.27 5.41 -4.04 -0.02 2.25 16 21 C -0.13 -2.09 5.46 -26.73 -0.15 -2.24 16 22 C 0.06 0.82 4.96 -3.83 -0.02 0.81 16 23 N -0.55 -7.27 5.02 -251.26 -1.26 -8.53 16 24 C 0.03 0.27 9.57 60.06 0.57 0.84 16 25 C 0.02 0.26 9.32 60.07 0.56 0.82 16 26 H 0.06 0.87 7.90 -51.93 -0.41 0.46 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.83 7.84 -51.93 -0.41 0.42 16 29 H 0.09 1.41 7.94 -51.93 -0.41 0.99 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.63 7.03 -51.93 -0.37 1.27 16 32 H 0.10 2.03 7.74 -51.93 -0.40 1.63 16 33 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.04 0.92 6.44 -51.93 -0.33 0.59 16 35 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.07 1.33 7.42 -51.93 -0.39 0.95 16 37 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 38 H 0.06 1.07 6.55 -51.93 -0.34 0.73 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 41 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 42 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 44 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 45 H 0.07 0.96 6.47 -51.93 -0.34 0.63 16 46 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 47 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -28.25 377.62 -9.67 -37.92 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.80 Total: 4.12 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -0.67 Total: -5.17 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: -0.95 Total: -44.90 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.25 -9.67 -37.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354807486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.209 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds