Wall clock time and date at job start Tue Mar 31 2020 06:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 115.56414 * 2 1 4 4 C 1.53079 * 117.51209 * 145.68942 * 2 1 3 5 5 C 1.52999 * 117.50243 * 214.30020 * 2 1 3 6 6 H 1.08994 * 117.49912 * 145.00482 * 5 2 1 7 7 C 1.53002 * 117.49478 * 0.02562 * 5 2 1 8 8 C 1.50704 * 109.46893 * 175.08727 * 7 5 2 9 9 O 1.21280 * 120.00103 * 359.97438 * 8 7 5 10 10 N 1.34777 * 119.99819 * 180.02562 * 8 7 5 11 11 C 1.46500 * 120.00124 * 359.97438 * 10 8 7 12 12 C 1.50706 * 109.46949 * 270.00237 * 11 10 8 13 13 H 1.07995 * 120.00167 * 359.72205 * 12 11 10 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 C 1.46494 * 119.99857 * 180.02562 * 10 8 7 21 21 C 1.53000 * 109.47257 * 269.99930 * 20 10 8 22 22 C 1.52998 * 109.47484 * 180.02562 * 21 20 10 23 23 N 1.46898 * 109.47562 * 179.97438 * 22 21 20 24 24 C 1.46890 * 111.00377 * 169.99980 * 23 22 21 25 25 C 1.46907 * 110.99505 * 293.95420 * 23 22 21 26 26 H 1.08998 * 109.47406 * 205.69867 * 1 2 3 27 27 H 1.08999 * 109.47337 * 325.70024 * 1 2 3 28 28 H 1.09007 * 109.46706 * 85.69758 * 1 2 3 29 29 H 1.09005 * 117.51229 * 0.02562 * 4 2 1 30 30 H 1.09001 * 117.51392 * 214.95624 * 4 2 1 31 31 H 1.08992 * 109.47088 * 55.08517 * 7 5 2 32 32 H 1.09003 * 109.47073 * 295.08254 * 7 5 2 33 33 H 1.09000 * 109.47175 * 150.00263 * 11 10 8 34 34 H 1.09001 * 109.47297 * 29.99770 * 11 10 8 35 35 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47567 * 29.99871 * 20 10 8 37 37 H 1.09002 * 109.47279 * 149.99319 * 20 10 8 38 38 H 1.09001 * 109.46925 * 299.99888 * 21 20 10 39 39 H 1.08999 * 109.46913 * 59.99997 * 21 20 10 40 40 H 1.09001 * 109.46857 * 299.99818 * 22 21 20 41 41 H 1.09005 * 109.46927 * 59.99656 * 22 21 20 42 42 H 1.09006 * 109.47296 * 59.99919 * 24 23 22 43 43 H 1.08998 * 109.47424 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.47157 * 299.99744 * 24 23 22 45 45 H 1.09001 * 109.47153 * 59.99899 * 25 23 22 46 46 H 1.09002 * 109.46761 * 179.97438 * 25 23 22 47 47 H 1.08995 * 109.47406 * 299.99316 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1214 0.7653 5 6 2.2365 -1.1211 -0.7648 6 1 3.1714 -0.8753 -1.2683 7 6 1.3589 -2.1561 -1.4715 8 6 2.2304 -3.0982 -2.2614 9 8 3.4348 -2.9556 -2.2597 10 7 1.6713 -4.0987 -2.9706 11 6 0.2164 -4.2706 -2.9732 12 6 -0.1833 -5.1857 -1.8444 13 1 0.5714 -5.6015 -1.1934 14 6 -1.5120 -5.4961 -1.6463 15 7 -2.4304 -4.9941 -2.4425 16 14 -2.0075 -6.6298 -0.2467 17 1 -0.7953 -7.0573 0.4969 18 1 -2.9246 -5.9096 0.6727 19 1 -2.6965 -7.8244 -0.7977 20 6 2.5185 -5.0149 -3.7380 21 6 2.7139 -4.4651 -5.1523 22 6 3.5982 -5.4222 -5.9540 23 7 3.7854 -4.8946 -7.3122 24 6 4.8131 -5.6551 -8.0354 25 6 2.5170 -4.8870 -8.0533 26 1 -0.3634 -0.9260 0.4456 27 1 -0.3634 0.8489 0.5791 28 1 -0.3633 0.0771 -1.0249 29 1 1.6123 -1.8594 1.2684 30 1 3.1724 -0.8758 1.2682 31 1 0.6690 -1.6481 -2.1453 32 1 0.7932 -2.7200 -0.7298 33 1 -0.0963 -4.7062 -3.9222 34 1 -0.2643 -3.3011 -2.8424 35 1 -3.3651 -5.2128 -2.3033 36 1 3.4875 -5.1102 -3.2482 37 1 2.0407 -5.9932 -3.7912 38 1 1.7449 -4.3699 -5.6423 39 1 3.1918 -3.4869 -5.0990 40 1 4.5673 -5.5178 -5.4643 41 1 3.1199 -6.4003 -6.0073 42 1 4.5104 -6.7000 -8.1050 43 1 4.9312 -5.2439 -9.0379 44 1 5.7602 -5.5861 -7.5002 45 1 1.7947 -4.2596 -7.5310 46 1 2.6840 -4.4914 -9.0552 47 1 2.1311 -5.9040 -8.1236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354807486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:25 Heat of formation + Delta-G solvation = -40.501735 kcal Electronic energy + Delta-G solvation = -22919.103793 eV Core-core repulsion = 19715.513391 eV Total energy + Delta-G solvation = -3203.590402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.93935 -38.90397 -38.41297 -36.79081 -34.78124 -33.15455 -30.68460 -29.22880 -29.02078 -28.49307 -26.89828 -24.90856 -23.85980 -22.39972 -21.80969 -20.71980 -19.61180 -18.62845 -18.00855 -17.28367 -16.66866 -16.50322 -16.38406 -16.18387 -15.57380 -15.52202 -14.97319 -14.57661 -14.44628 -14.36515 -13.73563 -13.68357 -13.51342 -13.28882 -13.17300 -13.10760 -12.84271 -12.71002 -12.67196 -12.60935 -12.42224 -12.39138 -12.31007 -12.12919 -11.92760 -11.68202 -11.49245 -10.82322 -10.75629 -10.65274 -10.45436 -9.45617 -9.32994 -8.20697 -6.35135 1.39220 1.43027 1.53016 1.79801 2.27402 2.43771 2.90405 3.03914 3.09697 3.71496 3.82041 3.91955 4.01544 4.09524 4.16358 4.23293 4.38223 4.44321 4.48093 4.49641 4.60346 4.64018 4.66662 4.73388 4.75688 4.76223 4.79223 4.92539 4.97018 4.99421 5.00381 5.00908 5.02808 5.15036 5.19604 5.22406 5.28718 5.39583 5.51305 5.66416 5.86305 6.03212 6.06156 6.11016 6.57983 6.81988 7.31515 7.43168 8.84971 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.005463 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.034370 B = 5124.369478 C = 7152.583730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.136 4.136 3 H 0.121 0.879 4 C -0.176 4.176 5 C -0.151 4.151 6 H 0.100 0.900 7 C -0.093 4.093 8 C 0.513 3.487 9 O -0.592 6.592 10 N -0.600 5.600 11 C 0.254 3.746 12 C -0.545 4.545 13 H 0.050 0.950 14 C 0.025 3.975 15 N -0.918 5.918 16 Si 0.953 3.047 17 H -0.273 1.273 18 H -0.276 1.276 19 H -0.278 1.278 20 C 0.121 3.879 21 C -0.112 4.112 22 C 0.066 3.934 23 N -0.565 5.565 24 C 0.025 3.975 25 C 0.022 3.978 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.020 0.980 34 H 0.031 0.969 35 H 0.268 0.732 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.029 0.971 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.275 3.534 -3.864 8.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.154 4.154 3 H 0.139 0.861 4 C -0.213 4.213 5 C -0.170 4.170 6 H 0.119 0.881 7 C -0.132 4.132 8 C 0.303 3.697 9 O -0.475 6.475 10 N -0.330 5.330 11 C 0.134 3.866 12 C -0.584 4.584 13 H 0.068 0.932 14 C -0.175 4.175 15 N -0.557 5.557 16 Si 0.779 3.221 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.204 1.204 20 C -0.003 4.003 21 C -0.151 4.151 22 C -0.062 4.062 23 N -0.289 5.289 24 C -0.123 4.123 25 C -0.127 4.127 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 7.838 4.066 -3.881 9.645 hybrid contribution -0.900 -1.659 0.493 1.951 sum 6.938 2.406 -3.387 8.087 Atomic orbital electron populations 1.21386 0.92534 1.02238 1.02065 1.22499 0.95606 0.94343 1.02922 0.86076 1.23228 1.02873 1.01827 0.93324 1.22054 1.00723 0.99704 0.94477 0.88146 1.21037 0.97343 0.95434 0.99436 1.20894 0.88294 0.81693 0.78849 1.90543 1.16262 1.74437 1.66270 1.48219 1.09078 1.29088 1.46601 1.19069 0.74409 0.96786 0.96382 1.21677 0.92505 1.29503 1.14666 0.93155 1.25594 0.96293 0.97228 0.98433 1.70009 1.01561 1.45129 1.39010 0.85576 0.78199 0.78881 0.79455 1.19720 1.20129 1.20414 1.21280 0.94879 0.92830 0.91292 1.21735 0.99592 0.99390 0.94354 1.21955 0.99827 0.95473 0.88980 1.61957 1.09371 1.54870 1.02722 1.22426 0.94912 0.95590 0.99348 1.22448 0.90934 1.00230 0.99041 0.93433 0.90363 0.92429 0.89353 0.87817 0.88934 0.89279 0.96234 0.95115 0.92288 0.91400 0.90797 0.92452 0.92916 0.90300 0.94234 0.95236 0.90169 0.90987 0.92201 0.89988 0.95354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.20 71.98 0.66 -2.49 16 2 C -0.14 -3.50 6.41 -10.77 -0.07 -3.57 16 3 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 4 C -0.18 -4.95 9.83 30.62 0.30 -4.65 16 5 C -0.15 -4.91 5.41 -10.79 -0.06 -4.97 16 6 H 0.10 3.52 7.31 -2.39 -0.02 3.50 16 7 C -0.09 -3.51 3.61 29.85 0.11 -3.40 16 8 C 0.51 22.04 7.67 87.66 0.67 22.72 16 9 O -0.59 -27.33 15.14 -3.03 -0.05 -27.37 16 10 N -0.60 -25.85 2.46 -826.15 -2.03 -27.88 16 11 C 0.25 12.16 4.97 85.63 0.43 12.58 16 12 C -0.54 -28.20 9.28 25.60 0.24 -27.96 16 13 H 0.05 2.68 7.81 -2.91 -0.02 2.65 16 14 C 0.03 1.30 5.46 84.66 0.46 1.76 16 15 N -0.92 -49.83 13.29 21.45 0.28 -49.54 16 16 Si 0.95 41.42 29.54 68.60 2.03 43.45 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 20 C 0.12 4.57 5.41 86.38 0.47 5.04 16 21 C -0.11 -3.72 5.46 30.59 0.17 -3.55 16 22 C 0.07 1.81 4.96 86.30 0.43 2.24 16 23 N -0.56 -14.36 5.02 -948.85 -4.76 -19.12 16 24 C 0.02 0.48 9.57 127.69 1.22 1.71 16 25 C 0.02 0.50 9.32 127.69 1.19 1.69 16 26 H 0.05 1.32 7.90 -2.39 -0.02 1.30 16 27 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.49 7.84 -2.38 -0.02 1.47 16 29 H 0.09 2.59 7.94 -2.38 -0.02 2.57 16 30 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.09 3.40 7.03 -2.39 -0.02 3.38 16 32 H 0.09 3.60 7.74 -2.39 -0.02 3.58 16 33 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 34 H 0.03 1.52 6.44 -2.39 -0.02 1.50 16 35 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 36 H 0.07 2.60 7.42 -2.39 -0.02 2.58 16 37 H 0.07 2.77 8.07 -2.39 -0.02 2.75 16 38 H 0.06 1.97 6.55 -2.39 -0.02 1.96 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.08 2.08 8.06 -2.39 -0.02 2.06 16 41 H 0.04 1.05 8.12 -2.38 -0.02 1.03 16 42 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 43 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 44 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 45 H 0.06 1.55 6.47 -2.39 -0.02 1.53 16 46 H 0.08 1.59 8.12 -2.39 -0.02 1.57 16 47 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -59.37 377.62 2.59 -56.78 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.90 Total: 26.55 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 6.22 Total: -2.85 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -6.51 Total: -96.54 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.37 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -59.37 2.59 -56.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354807486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.275 kcal (2) G-P(sol) polarization free energy of solvation -59.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds