Wall clock time and date at job start Tue Mar 31 2020 06:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.02091 * 2 1 4 4 C 1.53876 * 110.03409 * 121.44493 * 2 1 3 5 5 C 1.54262 * 106.59896 * 119.28117 * 4 2 1 6 6 C 1.54896 * 104.19454 * 23.61189 * 5 4 2 7 7 H 1.08997 * 110.91543 * 80.44959 * 6 5 4 8 8 N 1.46505 * 110.75358 * 203.73933 * 6 5 4 9 9 C 1.34769 * 120.00177 * 268.32828 * 8 6 5 10 10 O 1.21584 * 120.00222 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00123 * 180.02562 * 9 8 6 12 12 C 1.46498 * 120.00346 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47311 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.46984 * 60.00251 * 13 12 11 15 15 C 1.53003 * 109.46978 * 300.00069 * 13 12 11 16 16 C 1.53000 * 109.46872 * 180.02562 * 13 12 11 17 17 C 1.50708 * 109.46973 * 180.02562 * 16 13 12 18 18 H 1.07991 * 119.99789 * 0.02562 * 17 16 13 19 19 C 1.37877 * 120.00008 * 179.97438 * 17 16 13 20 20 N 1.31514 * 120.00089 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 C 1.54271 * 110.03097 * 238.60983 * 2 1 3 26 26 H 1.09006 * 109.47453 * 181.38975 * 1 2 3 27 27 H 1.09000 * 109.46868 * 301.38652 * 1 2 3 28 28 H 1.08993 * 109.47230 * 61.38763 * 1 2 3 29 29 H 1.08997 * 110.03282 * 238.56935 * 4 2 1 30 30 H 1.08997 * 110.02849 * 359.95176 * 4 2 1 31 31 H 1.09001 * 110.48790 * 264.93328 * 5 4 2 32 32 H 1.08998 * 110.48955 * 142.28854 * 5 4 2 33 33 H 0.97003 * 119.99554 * 88.32882 * 8 6 5 34 34 H 0.97000 * 120.00165 * 359.97438 * 11 9 8 35 35 H 1.09007 * 109.47173 * 59.99932 * 12 11 9 36 36 H 1.09000 * 109.47353 * 300.00047 * 12 11 9 37 37 H 1.08998 * 109.47229 * 179.97438 * 14 13 12 38 38 H 1.09003 * 109.47307 * 299.99648 * 14 13 12 39 39 H 1.09000 * 109.47006 * 60.00077 * 14 13 12 40 40 H 1.09001 * 109.46867 * 299.99636 * 15 13 12 41 41 H 1.08993 * 109.47365 * 60.00455 * 15 13 12 42 42 H 1.08998 * 109.46607 * 179.97438 * 15 13 12 43 43 H 1.08994 * 109.48028 * 60.00123 * 16 13 12 44 44 H 1.09000 * 109.47206 * 299.99977 * 16 13 12 45 45 H 0.96997 * 119.99848 * 180.02562 * 20 19 17 46 46 H 1.09002 * 110.48404 * 98.42806 * 25 2 1 47 47 H 1.08999 * 110.48331 * 335.78524 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0571 -0.7542 1.2333 5 6 2.8874 -1.9410 0.7026 6 6 3.3136 -1.5004 -0.7199 7 1 4.1718 -0.8296 -0.6788 8 7 3.6077 -2.6655 -1.5580 9 6 4.8646 -3.1471 -1.6253 10 8 5.7546 -2.6145 -0.9909 11 7 5.1353 -4.2186 -2.3967 12 6 6.5017 -4.7419 -2.4703 13 6 6.5349 -5.9513 -3.4070 14 6 6.0752 -5.5276 -4.8033 15 6 5.6009 -7.0378 -2.8703 16 6 7.9619 -6.4980 -3.4833 17 6 7.9948 -7.6889 -4.4064 18 1 7.0887 -8.0220 -4.8904 19 6 9.1818 -8.3523 -4.6337 20 7 9.2107 -9.3912 -5.4396 21 14 10.7492 -7.7756 -3.7969 22 1 11.4308 -6.7757 -4.6577 23 1 11.6495 -8.9362 -3.5782 24 1 10.4134 -7.1564 -2.4896 25 6 2.0584 -0.7549 -1.2373 26 1 -0.3634 -1.0274 0.0249 27 1 -0.3633 0.5352 0.8773 28 1 -0.3633 0.4921 -0.9021 29 1 2.6867 -0.0963 1.8324 30 1 1.2229 -1.1194 1.8323 31 1 2.2771 -2.8429 0.6557 32 1 3.7637 -2.1044 1.3298 33 1 2.8978 -3.0902 -2.0645 34 1 4.4254 -4.6434 -2.9032 35 1 6.8291 -5.0442 -1.4755 36 1 7.1672 -3.9677 -2.8522 37 1 6.0993 -6.3890 -5.4708 38 1 5.0585 -5.1383 -4.7486 39 1 6.7406 -4.7535 -5.1856 40 1 5.9286 -7.3396 -1.8754 41 1 4.5843 -6.6486 -2.8156 42 1 5.6243 -7.8991 -3.5378 43 1 8.2891 -6.8000 -2.4885 44 1 8.6276 -5.7241 -3.8654 45 1 10.0457 -9.8582 -5.5992 46 1 2.3297 -0.0527 -2.0255 47 1 1.3142 -1.4652 -1.5973 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355351192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:21 Heat of formation + Delta-G solvation = -66.656873 kcal Electronic energy + Delta-G solvation = -22577.389256 eV Core-core repulsion = 19372.664682 eV Total energy + Delta-G solvation = -3204.724574 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.14323 -38.59890 -37.15798 -34.09285 -33.53539 -32.06377 -30.57640 -28.65550 -27.73594 -26.53845 -26.10381 -24.84134 -22.54138 -21.03833 -20.75572 -19.83400 -18.74457 -17.60597 -16.85310 -16.45298 -16.07410 -15.24158 -14.85934 -14.36195 -14.09322 -13.92269 -13.73434 -13.56112 -13.32764 -13.31462 -12.76035 -12.68741 -12.41772 -12.24922 -12.04332 -11.66813 -11.30807 -11.22015 -11.09853 -11.03955 -10.99482 -10.91326 -10.66415 -10.59907 -10.45867 -10.06922 -9.94774 -9.73173 -9.49285 -9.14335 -8.97773 -8.58707 -8.52141 -6.03113 -4.00219 2.83330 3.33003 3.37456 3.40926 3.45546 4.23627 4.29358 4.39323 4.47101 4.58391 5.00920 5.05665 5.08962 5.16394 5.27004 5.29493 5.29804 5.41115 5.52059 5.54056 5.57265 5.64179 5.66372 5.78158 5.80230 5.95680 6.01077 6.10010 6.14504 6.15116 6.21580 6.35586 6.53767 6.54502 6.61490 6.76356 6.92966 7.03234 7.05431 7.09363 7.22696 7.39047 7.79608 8.17625 8.54025 8.77880 9.00979 9.59751 11.09618 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042018 B = 0.002835 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.213492 B = 9873.921569 C =10159.588888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.119 4.119 5 C -0.137 4.137 6 C 0.159 3.841 7 H 0.096 0.904 8 N -0.744 5.744 9 C 0.700 3.300 10 O -0.595 6.595 11 N -0.737 5.737 12 C 0.145 3.855 13 C -0.063 4.063 14 C -0.128 4.128 15 C -0.127 4.127 16 C -0.002 4.002 17 C -0.510 4.510 18 H 0.078 0.922 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.265 1.265 25 C -0.127 4.127 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.394 0.606 34 H 0.394 0.606 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.030 0.970 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.030 0.970 42 H 0.071 0.929 43 H 0.018 0.982 44 H 0.014 0.986 45 H 0.262 0.738 46 H 0.071 0.929 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.999 16.686 9.332 26.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.092 0.908 4 C -0.158 4.158 5 C -0.176 4.176 6 C 0.054 3.946 7 H 0.114 0.886 8 N -0.399 5.399 9 C 0.400 3.600 10 O -0.474 6.474 11 N -0.392 5.392 12 C 0.021 3.979 13 C -0.063 4.063 14 C -0.185 4.185 15 C -0.185 4.185 16 C -0.040 4.040 17 C -0.548 4.548 18 H 0.096 0.904 19 C -0.135 4.135 20 N -0.544 5.544 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.189 1.189 25 C -0.165 4.165 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.227 0.773 34 H 0.229 0.771 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.037 0.963 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.016 17.031 9.837 26.007 hybrid contribution 0.288 -0.241 -0.106 0.390 sum -16.727 16.791 9.732 25.621 Atomic orbital electron populations 1.21883 0.94829 1.01835 1.01606 1.21674 0.95787 0.99476 0.94461 0.90795 1.22183 0.99425 0.96980 0.97172 1.22770 0.99903 0.98108 0.96776 1.21771 0.97535 0.86339 0.88998 0.88615 1.45118 1.08838 1.34049 1.51913 1.16030 0.82818 0.80761 0.80372 1.90902 1.45385 1.61804 1.49300 1.45330 1.12448 1.31654 1.49816 1.21483 0.80627 0.95742 1.00025 1.20691 0.99111 0.92673 0.93829 1.21764 0.98036 1.01705 0.96998 1.21760 0.96168 0.99303 1.01238 1.19596 0.90395 0.96575 0.97468 1.21079 0.96293 1.11171 1.26231 0.90413 1.25002 0.98889 0.94757 0.94848 1.69902 1.26989 1.20479 1.36993 0.86856 0.83705 0.78319 0.80875 1.20383 1.21534 1.18946 1.22715 0.96723 0.99282 0.97796 0.92557 0.92677 0.92719 0.91667 0.91541 0.91435 0.91144 0.77298 0.77073 0.92095 0.92092 0.90954 0.95074 0.93428 0.93423 0.95084 0.90957 0.96326 0.96782 0.92817 0.91066 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.84 37.16 0.33 -0.47 16 2 C -0.09 -0.62 3.50 -89.50 -0.31 -0.93 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.12 -0.87 6.46 -25.61 -0.17 -1.03 16 5 C -0.14 -1.27 6.51 -25.07 -0.16 -1.44 16 6 C 0.16 1.58 3.27 -65.94 -0.22 1.37 16 7 H 0.10 1.16 7.54 -51.93 -0.39 0.77 16 8 N -0.74 -8.04 5.18 -56.73 -0.29 -8.33 16 9 C 0.70 10.54 8.57 -86.92 -0.74 9.80 16 10 O -0.60 -11.49 15.99 5.29 0.08 -11.40 16 11 N -0.74 -10.50 4.96 -65.23 -0.32 -10.83 16 12 C 0.14 2.49 4.56 -4.04 -0.02 2.47 16 13 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 14 C -0.13 -2.21 8.05 37.15 0.30 -1.91 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C 0.00 -0.06 3.11 -27.88 -0.09 -0.14 16 17 C -0.51 -13.67 8.20 -34.44 -0.28 -13.95 16 18 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 19 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 20 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 21 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 25 C -0.13 -0.91 5.98 -25.07 -0.15 -1.06 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.44 7.67 -51.93 -0.40 0.04 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.39 3.17 8.58 -40.82 -0.35 2.82 16 34 H 0.39 4.69 6.18 -40.82 -0.25 4.44 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 38 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 42 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 43 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 44 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.46 7.73 -51.93 -0.40 0.06 16 LS Contribution 360.79 15.07 5.44 5.44 Total: -1.00 -31.64 360.79 -8.90 -40.53 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -8.51 Total: 2.83 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.39 Total: -8.67 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.16 Total: -45.68 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.64 -8.90 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355351192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.123 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds