Wall clock time and date at job start Tue Mar 31 2020 06:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.02091 * 2 1 4 4 C 1.53876 * 110.03409 * 121.44493 * 2 1 3 5 5 C 1.54262 * 106.59896 * 119.28117 * 4 2 1 6 6 C 1.54896 * 104.19454 * 23.61189 * 5 4 2 7 7 H 1.08997 * 110.91543 * 80.44959 * 6 5 4 8 8 N 1.46505 * 110.75358 * 203.73933 * 6 5 4 9 9 C 1.34769 * 120.00177 * 268.32828 * 8 6 5 10 10 O 1.21584 * 120.00222 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00123 * 180.02562 * 9 8 6 12 12 C 1.46498 * 120.00346 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47311 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.46984 * 60.00251 * 13 12 11 15 15 C 1.53003 * 109.46978 * 300.00069 * 13 12 11 16 16 C 1.53000 * 109.46872 * 180.02562 * 13 12 11 17 17 C 1.50708 * 109.46973 * 180.02562 * 16 13 12 18 18 H 1.07991 * 119.99789 * 0.02562 * 17 16 13 19 19 C 1.37877 * 120.00008 * 179.97438 * 17 16 13 20 20 N 1.31514 * 120.00089 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 C 1.54271 * 110.03097 * 238.60983 * 2 1 3 26 26 H 1.09006 * 109.47453 * 181.38975 * 1 2 3 27 27 H 1.09000 * 109.46868 * 301.38652 * 1 2 3 28 28 H 1.08993 * 109.47230 * 61.38763 * 1 2 3 29 29 H 1.08997 * 110.03282 * 238.56935 * 4 2 1 30 30 H 1.08997 * 110.02849 * 359.95176 * 4 2 1 31 31 H 1.09001 * 110.48790 * 264.93328 * 5 4 2 32 32 H 1.08998 * 110.48955 * 142.28854 * 5 4 2 33 33 H 0.97003 * 119.99554 * 88.32882 * 8 6 5 34 34 H 0.97000 * 120.00165 * 359.97438 * 11 9 8 35 35 H 1.09007 * 109.47173 * 59.99932 * 12 11 9 36 36 H 1.09000 * 109.47353 * 300.00047 * 12 11 9 37 37 H 1.08998 * 109.47229 * 179.97438 * 14 13 12 38 38 H 1.09003 * 109.47307 * 299.99648 * 14 13 12 39 39 H 1.09000 * 109.47006 * 60.00077 * 14 13 12 40 40 H 1.09001 * 109.46867 * 299.99636 * 15 13 12 41 41 H 1.08993 * 109.47365 * 60.00455 * 15 13 12 42 42 H 1.08998 * 109.46607 * 179.97438 * 15 13 12 43 43 H 1.08994 * 109.48028 * 60.00123 * 16 13 12 44 44 H 1.09000 * 109.47206 * 299.99977 * 16 13 12 45 45 H 0.96997 * 119.99848 * 180.02562 * 20 19 17 46 46 H 1.09002 * 110.48404 * 98.42806 * 25 2 1 47 47 H 1.08999 * 110.48331 * 335.78524 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0571 -0.7542 1.2333 5 6 2.8874 -1.9410 0.7026 6 6 3.3136 -1.5004 -0.7199 7 1 4.1718 -0.8296 -0.6788 8 7 3.6077 -2.6655 -1.5580 9 6 4.8646 -3.1471 -1.6253 10 8 5.7546 -2.6145 -0.9909 11 7 5.1353 -4.2186 -2.3967 12 6 6.5017 -4.7419 -2.4703 13 6 6.5349 -5.9513 -3.4070 14 6 6.0752 -5.5276 -4.8033 15 6 5.6009 -7.0378 -2.8703 16 6 7.9619 -6.4980 -3.4833 17 6 7.9948 -7.6889 -4.4064 18 1 7.0887 -8.0220 -4.8904 19 6 9.1818 -8.3523 -4.6337 20 7 9.2107 -9.3912 -5.4396 21 14 10.7492 -7.7756 -3.7969 22 1 11.4308 -6.7757 -4.6577 23 1 11.6495 -8.9362 -3.5782 24 1 10.4134 -7.1564 -2.4896 25 6 2.0584 -0.7549 -1.2373 26 1 -0.3634 -1.0274 0.0249 27 1 -0.3633 0.5352 0.8773 28 1 -0.3633 0.4921 -0.9021 29 1 2.6867 -0.0963 1.8324 30 1 1.2229 -1.1194 1.8323 31 1 2.2771 -2.8429 0.6557 32 1 3.7637 -2.1044 1.3298 33 1 2.8978 -3.0902 -2.0645 34 1 4.4254 -4.6434 -2.9032 35 1 6.8291 -5.0442 -1.4755 36 1 7.1672 -3.9677 -2.8522 37 1 6.0993 -6.3890 -5.4708 38 1 5.0585 -5.1383 -4.7486 39 1 6.7406 -4.7535 -5.1856 40 1 5.9286 -7.3396 -1.8754 41 1 4.5843 -6.6486 -2.8156 42 1 5.6243 -7.8991 -3.5378 43 1 8.2891 -6.8000 -2.4885 44 1 8.6276 -5.7241 -3.8654 45 1 10.0457 -9.8582 -5.5992 46 1 2.3297 -0.0527 -2.0255 47 1 1.3142 -1.4652 -1.5973 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355351192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:20 Heat of formation + Delta-G solvation = -86.724789 kcal Electronic energy + Delta-G solvation = -22578.259466 eV Core-core repulsion = 19372.664682 eV Total energy + Delta-G solvation = -3205.594784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.25349 -39.51152 -38.52495 -35.21465 -35.00562 -33.88343 -31.26914 -29.79506 -29.20282 -27.97457 -27.37512 -25.55451 -24.32291 -22.13995 -21.63630 -20.54855 -19.99998 -18.98368 -18.85033 -17.44299 -16.82267 -16.45201 -16.32295 -15.79360 -15.47170 -15.30003 -15.04303 -14.53931 -14.29371 -14.19887 -14.13935 -13.95857 -13.82610 -13.28299 -12.95065 -12.83951 -12.73648 -12.59733 -12.40115 -12.29298 -12.15130 -11.90514 -11.77152 -11.60991 -11.50852 -11.48019 -11.38768 -11.25488 -11.11861 -10.90010 -10.70056 -10.29041 -9.69148 -8.22095 -6.21905 1.35974 1.38851 1.49033 1.76165 2.19112 2.39411 3.13372 3.33831 3.63421 3.73012 3.93848 3.95783 4.08015 4.17719 4.39011 4.45967 4.47366 4.54198 4.65019 4.67352 4.73640 4.76194 4.79044 4.92938 4.96846 5.00864 5.03195 5.10644 5.13833 5.16752 5.23989 5.30916 5.35331 5.38059 5.38479 5.41625 5.52245 5.56921 5.58793 5.67498 5.70791 5.77196 6.07370 6.38715 6.84780 7.15761 7.40796 7.63790 8.93418 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042018 B = 0.002835 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.213492 B = 9873.921569 C =10159.588888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.116 4.116 5 C -0.134 4.134 6 C 0.153 3.847 7 H 0.069 0.931 8 N -0.725 5.725 9 C 0.698 3.302 10 O -0.641 6.641 11 N -0.726 5.726 12 C 0.159 3.841 13 C -0.056 4.056 14 C -0.123 4.123 15 C -0.122 4.122 16 C -0.005 4.005 17 C -0.500 4.500 18 H 0.053 0.947 19 C 0.005 3.995 20 N -0.951 5.951 21 Si 0.933 3.067 22 H -0.272 1.272 23 H -0.288 1.288 24 H -0.253 1.253 25 C -0.117 4.117 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.411 0.589 34 H 0.409 0.591 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.014 0.986 44 H 0.013 0.987 45 H 0.262 0.738 46 H 0.074 0.926 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.042 18.372 10.068 28.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.094 0.906 4 C -0.154 4.154 5 C -0.173 4.173 6 C 0.048 3.952 7 H 0.088 0.912 8 N -0.381 5.381 9 C 0.398 3.602 10 O -0.523 6.523 11 N -0.383 5.383 12 C 0.034 3.966 13 C -0.057 4.057 14 C -0.180 4.180 15 C -0.180 4.180 16 C -0.043 4.043 17 C -0.538 4.538 18 H 0.072 0.928 19 C -0.191 4.191 20 N -0.593 5.593 21 Si 0.758 3.242 22 H -0.197 1.197 23 H -0.215 1.215 24 H -0.176 1.176 25 C -0.155 4.155 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.248 0.752 34 H 0.246 0.754 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.032 0.968 44 H 0.031 0.969 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.129 18.727 10.564 28.778 hybrid contribution 0.841 -0.753 -0.337 1.177 sum -18.288 17.974 10.227 27.607 Atomic orbital electron populations 1.21860 0.93664 1.02174 1.02173 1.21672 0.96669 0.99304 0.93544 0.90609 1.22168 0.99391 0.96155 0.97673 1.22723 0.99312 0.99325 0.95988 1.21869 0.97928 0.85803 0.89644 0.91240 1.44971 1.07775 1.33820 1.51502 1.16185 0.83552 0.80564 0.79935 1.90879 1.47166 1.63132 1.51096 1.45026 1.11665 1.31578 1.49982 1.21096 0.82072 0.94685 0.98750 1.20545 0.96617 0.93457 0.95083 1.21691 1.00277 1.00553 0.95460 1.21688 0.98100 0.98069 1.00100 1.19579 0.93641 0.95080 0.95959 1.21358 0.95158 1.11711 1.25582 0.92849 1.25824 1.02374 0.95088 0.95820 1.70037 1.27818 1.22220 1.39180 0.85910 0.79915 0.77932 0.80400 1.19733 1.21452 1.17648 1.22676 0.95381 0.99313 0.98110 0.92307 0.92218 0.92132 0.91915 0.90445 0.90823 0.93649 0.75235 0.75363 0.93250 0.93124 0.93564 0.91248 0.93771 0.93837 0.91269 0.93551 0.96759 0.96892 0.92872 0.90699 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.84 71.98 0.64 -0.49 16 2 C -0.09 -0.98 3.50 -10.07 -0.04 -1.02 16 3 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 4 C -0.12 -1.48 6.46 31.32 0.20 -1.27 16 5 C -0.13 -2.34 6.51 31.67 0.21 -2.14 16 6 C 0.15 2.82 3.27 46.28 0.15 2.97 16 7 H 0.07 1.68 7.54 -2.39 -0.02 1.66 16 8 N -0.73 -14.04 5.18 -451.67 -2.34 -16.39 16 9 C 0.70 19.89 8.57 179.06 1.53 21.43 16 10 O -0.64 -24.54 15.99 -3.98 -0.06 -24.60 16 11 N -0.73 -18.97 4.96 -478.54 -2.37 -21.35 16 12 C 0.16 5.23 4.56 86.38 0.39 5.62 16 13 C -0.06 -2.01 0.54 -52.18 -0.03 -2.04 16 14 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 15 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 16 C 0.00 -0.21 3.11 29.85 0.09 -0.12 16 17 C -0.50 -27.20 8.20 25.60 0.21 -26.99 16 18 H 0.05 3.12 5.92 -2.92 -0.02 3.10 16 19 C 0.01 0.30 5.47 84.65 0.46 0.76 16 20 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 21 Si 0.93 44.79 27.47 68.60 1.88 46.67 16 22 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.25 -11.51 6.54 99.48 0.65 -10.85 16 25 C -0.12 -1.36 5.98 31.67 0.19 -1.17 16 26 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 27 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.83 7.67 -2.39 -0.02 0.81 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.41 5.18 8.58 -92.71 -0.80 4.38 16 34 H 0.41 8.22 6.18 -92.71 -0.57 7.65 16 35 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 1.78 6.62 -2.39 -0.02 1.76 16 38 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 42 H 0.05 1.79 6.62 -2.39 -0.02 1.77 16 43 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 44 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 45 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 46 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.09 0.78 7.73 -2.39 -0.02 0.76 16 Total: -1.00 -70.15 360.79 2.10 -68.05 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -0.48 Total: 17.51 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 5.17 Total: -11.43 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -4.42 Total: -96.20 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.06 Total: -24.60 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -70.15 2.10 -68.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355351192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.670 kcal (2) G-P(sol) polarization free energy of solvation -70.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds