Wall clock time and date at job start Tue Mar 31 2020 06:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.06068 * 2 1 4 4 C 1.54274 * 110.02983 * 121.41476 * 2 1 3 5 5 C 1.55031 * 104.27841 * 142.79909 * 4 2 1 6 6 C 1.54889 * 102.68501 * 322.23405 * 5 4 2 7 7 H 1.09005 * 110.48815 * 279.02407 * 6 5 4 8 8 N 1.46504 * 110.48884 * 156.51545 * 6 5 4 9 9 C 1.34777 * 119.99854 * 88.23829 * 8 6 5 10 10 O 1.21593 * 119.99953 * 0.02562 * 9 8 6 11 11 N 1.34773 * 120.00097 * 180.27545 * 9 8 6 12 12 C 1.46500 * 120.00431 * 179.72742 * 11 9 8 13 13 C 1.52999 * 109.47528 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46443 * 299.99804 * 13 12 11 15 15 C 1.52995 * 109.47352 * 59.99668 * 13 12 11 16 16 C 1.52998 * 109.47306 * 180.02562 * 13 12 11 17 17 C 1.50698 * 109.47245 * 179.97438 * 16 13 12 18 18 H 1.08001 * 120.00090 * 0.02562 * 17 16 13 19 19 C 1.37872 * 120.00007 * 179.97438 * 17 16 13 20 20 N 1.31522 * 120.00198 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00191 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47109 * 60.00141 * 21 19 17 23 23 H 1.48496 * 109.47265 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47190 * 300.00363 * 21 19 17 25 25 C 1.53874 * 110.03288 * 238.57934 * 2 1 3 26 26 H 1.08995 * 109.47626 * 181.42004 * 1 2 3 27 27 H 1.09003 * 109.46843 * 301.42015 * 1 2 3 28 28 H 1.09000 * 109.47265 * 61.41889 * 1 2 3 29 29 H 1.08990 * 110.48567 * 261.56711 * 4 2 1 30 30 H 1.08999 * 110.48539 * 24.08671 * 4 2 1 31 31 H 1.09003 * 110.87830 * 203.89906 * 5 4 2 32 32 H 1.09005 * 110.69659 * 80.48505 * 5 4 2 33 33 H 0.97000 * 120.00410 * 268.24554 * 8 6 5 34 34 H 0.97000 * 120.00112 * 359.73180 * 11 9 8 35 35 H 1.09009 * 109.46712 * 300.00517 * 12 11 9 36 36 H 1.08998 * 109.47207 * 59.99494 * 12 11 9 37 37 H 1.08995 * 109.47475 * 60.00483 * 14 13 12 38 38 H 1.09008 * 109.46867 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.47371 * 299.99516 * 14 13 12 40 40 H 1.08995 * 109.47107 * 60.00613 * 15 13 12 41 41 H 1.09001 * 109.46983 * 180.02562 * 15 13 12 42 42 H 1.09003 * 109.47199 * 300.00234 * 15 13 12 43 43 H 1.09000 * 109.46924 * 300.00089 * 16 13 12 44 44 H 1.09007 * 109.47220 * 59.99210 * 16 13 12 45 45 H 0.96995 * 120.00094 * 179.97438 * 20 19 17 46 46 H 1.08997 * 110.03470 * 121.42980 * 25 2 1 47 47 H 1.09004 * 110.06883 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0584 -0.7555 1.2370 5 6 3.3137 -1.5043 0.7203 6 6 2.8873 -1.9408 -0.7034 7 1 2.2776 -2.8433 -0.6592 8 7 4.0651 -2.1600 -1.5468 9 6 4.6588 -3.3696 -1.5738 10 8 4.2167 -4.2791 -0.8985 11 7 5.7455 -3.5698 -2.3453 12 6 6.3946 -4.8830 -2.3701 13 6 7.5950 -4.8409 -3.3178 14 6 7.1199 -4.4801 -4.7267 15 6 8.5926 -3.7881 -2.8307 16 6 8.2724 -6.2125 -3.3441 17 6 9.4544 -6.1711 -4.2780 18 1 9.6984 -5.2577 -4.8001 19 6 10.2250 -7.2990 -4.4650 20 7 9.9283 -8.4111 -3.8287 21 14 11.6907 -7.2476 -5.6220 22 1 12.6590 -6.2259 -5.1491 23 1 12.3480 -8.5789 -5.6476 24 1 11.2297 -6.8972 -6.9895 25 6 2.0571 -0.7536 -1.2337 26 1 -0.3634 -1.0273 0.0255 27 1 -0.3633 0.5358 0.8770 28 1 -0.3634 0.4916 -0.9024 29 1 2.3297 -0.0536 2.0254 30 1 1.3133 -1.4643 1.5981 31 1 3.5310 -2.3730 1.3418 32 1 4.1720 -0.8338 0.6779 33 1 4.4176 -1.4346 -2.0857 34 1 6.0981 -2.8444 -2.8842 35 1 6.7332 -5.1399 -1.3663 36 1 5.6837 -5.6331 -2.7167 37 1 6.6371 -3.5031 -4.7083 38 1 7.9751 -4.4505 -5.4020 39 1 6.4093 -5.2302 -5.0737 40 1 8.9310 -4.0451 -1.8270 41 1 9.4476 -3.7578 -3.5061 42 1 8.1097 -2.8110 -2.8123 43 1 8.6107 -6.4699 -2.3404 44 1 7.5614 -6.9622 -3.6913 45 1 10.4702 -9.2047 -3.9606 46 1 2.6867 -0.0955 -1.8324 47 1 1.2233 -1.1193 -1.8331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355351193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:24 Heat of formation + Delta-G solvation = -69.405480 kcal Electronic energy + Delta-G solvation = -22535.960518 eV Core-core repulsion = 19331.116756 eV Total energy + Delta-G solvation = -3204.843763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.08948 -38.53099 -37.03298 -34.03081 -33.48613 -32.03839 -30.54283 -28.54947 -27.05931 -26.48836 -26.02607 -24.82078 -22.87273 -21.09327 -20.52650 -19.99751 -18.77307 -17.58187 -16.64281 -16.25402 -15.35146 -15.16706 -15.01333 -14.52411 -14.07530 -13.97671 -13.78716 -13.52822 -13.49463 -13.01590 -12.72324 -12.44068 -12.26031 -12.04952 -11.96599 -11.56099 -11.21673 -11.11257 -11.00910 -10.98665 -10.89442 -10.86012 -10.75160 -10.60976 -10.37029 -10.24672 -9.96761 -9.84795 -9.17783 -9.07816 -8.91652 -8.50074 -8.34059 -5.98189 -3.99546 2.90746 3.32846 3.38309 3.39468 3.44978 4.27264 4.32383 4.43624 4.47669 4.60520 5.02247 5.08571 5.17347 5.24924 5.29218 5.32749 5.37074 5.51589 5.55051 5.56993 5.67292 5.67769 5.77784 5.81794 5.82693 6.01132 6.03672 6.13781 6.20430 6.25303 6.32200 6.44459 6.60808 6.63318 6.65041 6.84267 7.08672 7.09872 7.10924 7.19149 7.66212 7.78992 8.00491 8.24616 8.42356 8.85377 9.05056 9.63306 11.13225 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.050146 B = 0.002670 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.232544 B =10482.684543 C =10628.470793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.120 4.120 5 C -0.136 4.136 6 C 0.161 3.839 7 H 0.092 0.908 8 N -0.746 5.746 9 C 0.699 3.301 10 O -0.594 6.594 11 N -0.738 5.738 12 C 0.147 3.853 13 C -0.072 4.072 14 C -0.126 4.126 15 C -0.126 4.126 16 C 0.036 3.964 17 C -0.511 4.511 18 H 0.058 0.942 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.127 4.127 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.392 0.608 34 H 0.393 0.607 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.028 0.972 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.028 0.972 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.260 0.740 46 H 0.068 0.932 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.321 18.696 5.589 24.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.091 0.909 4 C -0.158 4.158 5 C -0.175 4.175 6 C 0.055 3.945 7 H 0.110 0.890 8 N -0.401 5.401 9 C 0.399 3.601 10 O -0.473 6.473 11 N -0.393 5.393 12 C 0.024 3.976 13 C -0.072 4.072 14 C -0.183 4.183 15 C -0.183 4.183 16 C -0.002 4.002 17 C -0.549 4.549 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.165 4.165 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.226 0.774 34 H 0.228 0.772 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.663 17.622 6.224 24.384 hybrid contribution 1.231 0.596 -1.149 1.787 sum -14.431 18.218 5.075 23.789 Atomic orbital electron populations 1.21903 0.94900 1.01997 1.01543 1.21687 0.95750 0.99331 0.94553 0.90925 1.22434 0.97388 0.98934 0.97011 1.22943 0.97678 1.00301 0.96617 1.21623 0.85580 0.98323 0.88986 0.88959 1.45224 1.32714 1.11972 1.50232 1.16053 0.80535 0.82826 0.80679 1.90908 1.66686 1.42504 1.47178 1.45379 1.30082 1.15560 1.48268 1.21473 0.94033 0.81982 1.00144 1.20905 0.92958 1.00034 0.93350 1.21751 1.01000 0.98356 0.97214 1.21747 0.99392 0.95809 1.01358 1.19089 0.94961 0.88648 0.97461 1.21142 1.11554 0.96585 1.25643 0.92341 1.25018 0.97711 0.95685 0.96121 1.69958 1.39607 1.01337 1.42481 0.86707 0.83026 0.77060 0.81465 1.20352 1.21416 1.20355 1.22504 0.99695 0.96565 0.97775 0.92401 0.92707 0.92740 0.91587 0.91259 0.90907 0.91323 0.77401 0.77246 0.92088 0.92084 0.95328 0.91520 0.93387 0.93386 0.91527 0.95330 0.96314 0.96312 0.92991 0.91306 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.85 37.16 0.33 -0.55 16 2 C -0.09 -0.63 3.50 -89.50 -0.31 -0.94 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.12 -0.91 6.36 -24.99 -0.16 -1.06 16 5 C -0.14 -1.34 6.59 -24.66 -0.16 -1.50 16 6 C 0.16 1.66 3.18 -66.27 -0.21 1.45 16 7 H 0.09 1.16 7.61 -51.93 -0.40 0.76 16 8 N -0.75 -8.41 5.17 -57.05 -0.30 -8.70 16 9 C 0.70 10.96 8.57 -86.92 -0.74 10.22 16 10 O -0.59 -11.90 16.02 5.28 0.08 -11.81 16 11 N -0.74 -11.01 4.96 -65.22 -0.32 -11.34 16 12 C 0.15 2.68 4.56 -4.04 -0.02 2.66 16 13 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 14 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 15 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 16 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 17 C -0.51 -13.60 7.65 -34.44 -0.26 -13.86 16 18 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 21 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C -0.13 -0.95 6.19 -25.61 -0.16 -1.10 16 26 H 0.06 0.37 8.12 -51.93 -0.42 -0.06 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.53 7.83 -51.93 -0.41 0.12 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.39 3.32 8.36 -40.82 -0.34 2.97 16 34 H 0.39 4.89 6.18 -40.82 -0.25 4.64 16 35 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 38 H 0.07 1.26 6.62 -51.92 -0.34 0.92 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 42 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.07 0.45 7.72 -51.93 -0.40 0.05 16 47 H 0.07 0.53 7.67 -51.93 -0.40 0.13 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -31.36 364.02 -9.25 -40.62 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.52 Total: 3.08 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -1.40 Total: -7.76 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.12 Total: -45.84 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.36 -9.25 -40.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355351193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.789 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds