Wall clock time and date at job start Tue Mar 31 2020 06:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.06068 * 2 1 4 4 C 1.54274 * 110.02983 * 121.41476 * 2 1 3 5 5 C 1.55031 * 104.27841 * 142.79909 * 4 2 1 6 6 C 1.54889 * 102.68501 * 322.23405 * 5 4 2 7 7 H 1.09005 * 110.48815 * 279.02407 * 6 5 4 8 8 N 1.46504 * 110.48884 * 156.51545 * 6 5 4 9 9 C 1.34777 * 119.99854 * 88.23829 * 8 6 5 10 10 O 1.21593 * 119.99953 * 0.02562 * 9 8 6 11 11 N 1.34773 * 120.00097 * 180.27545 * 9 8 6 12 12 C 1.46500 * 120.00431 * 179.72742 * 11 9 8 13 13 C 1.52999 * 109.47528 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46443 * 299.99804 * 13 12 11 15 15 C 1.52995 * 109.47352 * 59.99668 * 13 12 11 16 16 C 1.52998 * 109.47306 * 180.02562 * 13 12 11 17 17 C 1.50698 * 109.47245 * 179.97438 * 16 13 12 18 18 H 1.08001 * 120.00090 * 0.02562 * 17 16 13 19 19 C 1.37872 * 120.00007 * 179.97438 * 17 16 13 20 20 N 1.31522 * 120.00198 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00191 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47109 * 60.00141 * 21 19 17 23 23 H 1.48496 * 109.47265 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47190 * 300.00363 * 21 19 17 25 25 C 1.53874 * 110.03288 * 238.57934 * 2 1 3 26 26 H 1.08995 * 109.47626 * 181.42004 * 1 2 3 27 27 H 1.09003 * 109.46843 * 301.42015 * 1 2 3 28 28 H 1.09000 * 109.47265 * 61.41889 * 1 2 3 29 29 H 1.08990 * 110.48567 * 261.56711 * 4 2 1 30 30 H 1.08999 * 110.48539 * 24.08671 * 4 2 1 31 31 H 1.09003 * 110.87830 * 203.89906 * 5 4 2 32 32 H 1.09005 * 110.69659 * 80.48505 * 5 4 2 33 33 H 0.97000 * 120.00410 * 268.24554 * 8 6 5 34 34 H 0.97000 * 120.00112 * 359.73180 * 11 9 8 35 35 H 1.09009 * 109.46712 * 300.00517 * 12 11 9 36 36 H 1.08998 * 109.47207 * 59.99494 * 12 11 9 37 37 H 1.08995 * 109.47475 * 60.00483 * 14 13 12 38 38 H 1.09008 * 109.46867 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.47371 * 299.99516 * 14 13 12 40 40 H 1.08995 * 109.47107 * 60.00613 * 15 13 12 41 41 H 1.09001 * 109.46983 * 180.02562 * 15 13 12 42 42 H 1.09003 * 109.47199 * 300.00234 * 15 13 12 43 43 H 1.09000 * 109.46924 * 300.00089 * 16 13 12 44 44 H 1.09007 * 109.47220 * 59.99210 * 16 13 12 45 45 H 0.96995 * 120.00094 * 179.97438 * 20 19 17 46 46 H 1.08997 * 110.03470 * 121.42980 * 25 2 1 47 47 H 1.09004 * 110.06883 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0584 -0.7555 1.2370 5 6 3.3137 -1.5043 0.7203 6 6 2.8873 -1.9408 -0.7034 7 1 2.2776 -2.8433 -0.6592 8 7 4.0651 -2.1600 -1.5468 9 6 4.6588 -3.3696 -1.5738 10 8 4.2167 -4.2791 -0.8985 11 7 5.7455 -3.5698 -2.3453 12 6 6.3946 -4.8830 -2.3701 13 6 7.5950 -4.8409 -3.3178 14 6 7.1199 -4.4801 -4.7267 15 6 8.5926 -3.7881 -2.8307 16 6 8.2724 -6.2125 -3.3441 17 6 9.4544 -6.1711 -4.2780 18 1 9.6984 -5.2577 -4.8001 19 6 10.2250 -7.2990 -4.4650 20 7 9.9283 -8.4111 -3.8287 21 14 11.6907 -7.2476 -5.6220 22 1 12.6590 -6.2259 -5.1491 23 1 12.3480 -8.5789 -5.6476 24 1 11.2297 -6.8972 -6.9895 25 6 2.0571 -0.7536 -1.2337 26 1 -0.3634 -1.0273 0.0255 27 1 -0.3633 0.5358 0.8770 28 1 -0.3634 0.4916 -0.9024 29 1 2.3297 -0.0536 2.0254 30 1 1.3133 -1.4643 1.5981 31 1 3.5310 -2.3730 1.3418 32 1 4.1720 -0.8338 0.6779 33 1 4.4176 -1.4346 -2.0857 34 1 6.0981 -2.8444 -2.8842 35 1 6.7332 -5.1399 -1.3663 36 1 5.6837 -5.6331 -2.7167 37 1 6.6371 -3.5031 -4.7083 38 1 7.9751 -4.4505 -5.4020 39 1 6.4093 -5.2302 -5.0737 40 1 8.9310 -4.0451 -1.8270 41 1 9.4476 -3.7578 -3.5061 42 1 8.1097 -2.8110 -2.8123 43 1 8.6107 -6.4699 -2.3404 44 1 7.5614 -6.9622 -3.6913 45 1 10.4702 -9.2047 -3.9606 46 1 2.6867 -0.0955 -1.8324 47 1 1.2233 -1.1193 -1.8331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355351193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:23 Heat of formation + Delta-G solvation = -88.955592 kcal Electronic energy + Delta-G solvation = -22536.808275 eV Core-core repulsion = 19331.116756 eV Total energy + Delta-G solvation = -3205.691519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.26647 -39.49474 -38.48020 -35.24293 -35.01592 -33.81519 -31.27427 -29.43734 -28.91138 -27.94548 -27.38449 -25.61664 -24.71695 -22.20284 -21.53285 -20.62923 -20.16295 -18.99702 -18.35441 -17.54785 -16.57981 -16.53403 -16.11049 -15.99735 -15.31858 -15.27072 -14.93303 -14.59481 -14.34108 -14.31563 -14.05572 -13.92118 -13.80782 -13.02651 -12.86736 -12.77925 -12.74385 -12.56678 -12.31829 -12.30457 -12.21197 -11.98849 -11.82851 -11.64616 -11.57023 -11.51898 -11.38598 -11.27040 -10.96149 -10.85009 -10.49509 -10.30345 -9.69904 -8.12591 -6.20631 1.43261 1.45603 1.52749 1.75674 2.18475 2.45398 3.21567 3.35142 3.62092 3.72681 3.94163 3.99616 4.10823 4.24358 4.39413 4.45650 4.51530 4.53672 4.68309 4.70629 4.75044 4.75844 4.78994 4.92826 4.98416 5.00899 5.08647 5.12610 5.13858 5.17615 5.23703 5.34719 5.37250 5.42032 5.50239 5.51494 5.55428 5.58218 5.60669 5.67869 5.81999 5.91053 6.06588 6.32070 6.94205 7.16607 7.46973 7.63778 8.99802 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.050146 B = 0.002670 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.232544 B =10482.684543 C =10628.470793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.087 0.913 4 C -0.116 4.116 5 C -0.136 4.136 6 C 0.154 3.846 7 H 0.064 0.936 8 N -0.725 5.725 9 C 0.696 3.304 10 O -0.643 6.643 11 N -0.724 5.724 12 C 0.162 3.838 13 C -0.063 4.063 14 C -0.120 4.120 15 C -0.120 4.120 16 C 0.039 3.961 17 C -0.513 4.513 18 H 0.074 0.926 19 C -0.007 4.007 20 N -0.939 5.939 21 Si 0.960 3.040 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.266 1.266 25 C -0.118 4.118 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.411 0.589 34 H 0.410 0.590 35 H 0.040 0.960 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.056 0.944 42 H 0.070 0.930 43 H -0.015 1.015 44 H -0.015 1.015 45 H 0.259 0.741 46 H 0.087 0.913 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.481 22.414 4.359 27.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.106 0.894 4 C -0.154 4.154 5 C -0.175 4.175 6 C 0.049 3.951 7 H 0.082 0.918 8 N -0.381 5.381 9 C 0.396 3.604 10 O -0.525 6.525 11 N -0.380 5.380 12 C 0.037 3.963 13 C -0.063 4.063 14 C -0.178 4.178 15 C -0.177 4.177 16 C 0.001 3.999 17 C -0.551 4.551 18 H 0.092 0.908 19 C -0.204 4.204 20 N -0.580 5.580 21 Si 0.785 3.215 22 H -0.191 1.191 23 H -0.218 1.218 24 H -0.191 1.191 25 C -0.156 4.156 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.248 0.752 34 H 0.247 0.753 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.004 0.996 44 H 0.004 0.996 45 H 0.068 0.932 46 H 0.106 0.894 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.828 21.427 4.966 27.098 hybrid contribution 1.216 -0.567 -0.704 1.515 sum -14.612 20.860 4.263 25.823 Atomic orbital electron populations 1.21899 0.94358 1.01745 1.02311 1.21684 0.96172 0.99668 0.93311 0.89431 1.22421 0.96097 0.98930 0.97920 1.22896 0.99123 0.99588 0.95856 1.21739 0.85187 0.98572 0.89608 0.91791 1.45058 1.32276 1.10850 1.49892 1.16231 0.80470 0.83524 0.80178 1.90886 1.67969 1.44517 1.49086 1.45007 1.29852 1.14650 1.48538 1.21030 0.93356 0.83314 0.98595 1.20695 0.93286 0.97292 0.95049 1.21685 1.00569 1.00267 0.95237 1.21680 0.98756 0.97117 1.00194 1.18981 0.94437 0.91382 0.95086 1.21554 1.11473 0.96901 1.25157 0.90837 1.25977 1.01001 0.95409 0.97986 1.70124 1.41182 1.02168 1.44561 0.85575 0.79354 0.77002 0.79556 1.19101 1.21796 1.19102 1.22471 0.99447 0.95383 0.98318 0.93202 0.92039 0.91916 0.90375 0.91753 0.93741 0.90616 0.75167 0.75252 0.94139 0.94100 0.91114 0.92503 0.94572 0.94588 0.92502 0.91127 0.99647 0.99630 0.93199 0.89410 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.85 71.98 0.64 -0.76 16 2 C -0.09 -0.95 3.50 -10.07 -0.04 -0.98 16 3 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 4 C -0.12 -1.57 6.36 31.72 0.20 -1.37 16 5 C -0.14 -2.55 6.59 31.93 0.21 -2.34 16 6 C 0.15 3.03 3.18 46.07 0.15 3.17 16 7 H 0.06 1.65 7.61 -2.38 -0.02 1.63 16 8 N -0.72 -14.98 5.17 -452.66 -2.34 -17.32 16 9 C 0.70 21.36 8.57 179.06 1.53 22.89 16 10 O -0.64 -26.46 16.02 -4.01 -0.06 -26.52 16 11 N -0.72 -20.53 4.96 -478.53 -2.37 -22.90 16 12 C 0.16 5.99 4.56 86.38 0.39 6.39 16 13 C -0.06 -2.38 0.54 -52.18 -0.03 -2.41 16 14 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 15 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 16 C 0.04 2.00 4.04 29.85 0.12 2.12 16 17 C -0.51 -27.55 7.65 25.60 0.20 -27.36 16 18 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 19 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 20 N -0.94 -57.59 13.29 21.45 0.28 -57.30 16 21 Si 0.96 43.66 29.54 68.60 2.03 45.68 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 C -0.12 -1.44 6.19 31.32 0.19 -1.24 16 26 H 0.05 0.56 8.12 -2.39 -0.02 0.54 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.93 7.83 -2.39 -0.02 0.92 16 31 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.41 5.49 8.36 -92.71 -0.77 4.71 16 34 H 0.41 8.72 6.18 -92.71 -0.57 8.15 16 35 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 1.76 6.86 -2.39 -0.02 1.75 16 38 H 0.06 2.03 6.62 -2.38 -0.02 2.01 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 42 H 0.07 1.76 6.86 -2.39 -0.02 1.75 16 43 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 44 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 45 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 46 H 0.09 0.77 7.72 -2.39 -0.02 0.76 16 47 H 0.07 0.92 7.67 -2.38 -0.02 0.90 16 Total: -1.00 -71.58 364.02 2.32 -69.26 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -0.40 Total: 17.82 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 5.19 Total: -8.73 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -4.43 Total: -97.52 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.06 Total: -26.52 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -71.58 2.32 -69.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355351193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.692 kcal (2) G-P(sol) polarization free energy of solvation -71.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds