Wall clock time and date at job start Tue Mar 31 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.67328 * 2 1 4 4 C 1.54882 * 110.76161 * 236.76097 * 2 1 3 5 5 C 1.54264 * 104.20158 * 203.74237 * 4 2 1 6 6 C 1.53882 * 106.59491 * 23.60825 * 5 4 2 7 7 H 1.09005 * 110.02864 * 119.33077 * 6 5 4 8 8 N 1.46492 * 110.03058 * 240.71530 * 6 5 4 9 9 C 1.34781 * 120.00297 * 272.90518 * 8 6 5 10 10 O 1.21583 * 119.99716 * 0.02562 * 9 8 6 11 11 N 1.34775 * 120.00055 * 180.02562 * 9 8 6 12 12 C 1.46504 * 119.99669 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46858 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47258 * 60.00017 * 13 12 11 15 15 C 1.53001 * 109.47247 * 299.99871 * 13 12 11 16 16 C 1.53003 * 109.46867 * 179.97438 * 13 12 11 17 17 C 1.50703 * 109.47038 * 180.02562 * 16 13 12 18 18 H 1.08006 * 120.00159 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00120 * 180.02562 * 17 16 13 20 20 N 1.31514 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 C 1.54262 * 106.63724 * 0.02656 * 6 5 4 26 26 H 1.08997 * 109.46945 * 181.77955 * 1 2 3 27 27 H 1.08994 * 109.47466 * 301.78857 * 1 2 3 28 28 H 1.09004 * 109.47185 * 61.78906 * 1 2 3 29 29 H 1.09003 * 110.48742 * 85.06438 * 4 2 1 30 30 H 1.09005 * 110.59801 * 322.48110 * 4 2 1 31 31 H 1.09001 * 110.03653 * 264.32471 * 5 4 2 32 32 H 1.08998 * 110.07723 * 142.91265 * 5 4 2 33 33 H 0.97003 * 119.99978 * 92.91002 * 8 6 5 34 34 H 0.96994 * 120.00039 * 0.02562 * 11 9 8 35 35 H 1.08996 * 109.46998 * 59.99975 * 12 11 9 36 36 H 1.09004 * 109.47081 * 299.99839 * 12 11 9 37 37 H 1.09000 * 109.47249 * 179.97438 * 14 13 12 38 38 H 1.08996 * 109.46941 * 299.99988 * 14 13 12 39 39 H 1.08996 * 109.47114 * 60.00036 * 14 13 12 40 40 H 1.08996 * 109.47108 * 300.00452 * 15 13 12 41 41 H 1.08996 * 109.47041 * 59.99958 * 15 13 12 42 42 H 1.09000 * 109.47105 * 180.02562 * 15 13 12 43 43 H 1.09003 * 109.46825 * 60.00325 * 16 13 12 44 44 H 1.08996 * 109.47396 * 299.99898 * 16 13 12 45 45 H 0.96998 * 119.99255 * 0.02562 * 20 19 17 46 46 H 1.08998 * 110.48833 * 95.04947 * 25 6 5 47 47 H 1.09008 * 110.48432 * 217.68616 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0199 0.0000 4 6 2.0790 -0.7938 -1.2113 5 6 3.4932 -1.2254 -0.7714 6 6 3.4931 -1.2280 0.7674 7 1 3.7128 -2.2289 1.1391 8 7 4.4869 -0.2768 1.2708 9 6 5.7652 -0.6668 1.4455 10 8 6.0936 -1.8080 1.1848 11 7 6.6794 0.2083 1.9091 12 6 8.0689 -0.2156 2.0984 13 6 8.8924 0.9591 2.6303 14 6 8.3139 1.4230 3.9686 15 6 8.8433 2.1125 1.6262 16 6 10.3435 0.5162 2.8286 17 6 11.1545 1.6731 3.3531 18 1 10.6823 2.6287 3.5272 19 6 12.4995 1.5118 3.6098 20 7 13.0747 0.3483 3.3974 21 14 13.5046 2.9456 4.2606 22 1 14.0680 3.7130 3.1208 23 1 14.6117 2.4307 5.1059 24 1 12.6334 3.8328 5.0723 25 6 2.0790 -0.7986 1.2098 26 1 -0.3633 -1.0271 0.0319 27 1 -0.3634 0.5413 0.8734 28 1 -0.3634 0.4858 -0.9056 29 1 2.1321 -0.1556 -2.0933 30 1 1.4582 -1.6674 -1.4105 31 1 4.2327 -0.5164 -1.1435 32 1 3.7129 -2.2250 -1.1464 33 1 4.2250 0.6339 1.4786 34 1 6.4173 1.1186 2.1175 35 1 8.4809 -0.5465 1.1451 36 1 8.1039 -1.0370 2.8142 37 1 8.9008 2.2596 4.3477 38 1 7.2801 1.7383 3.8277 39 1 8.3489 0.6014 4.6839 40 1 9.2554 1.7820 0.6728 41 1 7.8095 2.4278 1.4853 42 1 9.4304 2.9491 2.0049 43 1 10.7559 0.1855 1.8754 44 1 10.3781 -0.3052 3.5441 45 1 12.5526 -0.3962 3.0598 46 1 1.4579 -1.6731 1.4036 47 1 2.1323 -0.1638 2.0943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355351194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:26 Heat of formation + Delta-G solvation = -72.489961 kcal Electronic energy + Delta-G solvation = -22652.660294 eV Core-core repulsion = 19447.682778 eV Total energy + Delta-G solvation = -3204.977516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.19286 -38.55686 -37.12165 -33.95626 -33.66481 -32.12623 -30.63730 -28.59990 -26.65956 -26.56867 -26.07811 -24.91794 -22.86804 -21.04390 -20.40555 -20.20319 -18.91122 -17.89557 -16.57373 -16.39439 -15.60323 -15.22176 -14.98195 -14.47908 -14.20557 -13.91737 -13.76296 -13.71589 -13.46055 -13.10516 -12.77726 -12.54077 -12.35547 -11.99447 -11.74274 -11.58609 -11.31249 -11.18570 -11.15677 -11.02175 -11.00188 -10.87240 -10.77843 -10.63873 -10.22329 -10.10658 -10.01117 -9.97427 -9.44066 -9.15102 -8.57601 -8.46073 -8.30077 -6.31736 -4.00692 2.86439 3.39850 3.43842 3.47093 3.62371 4.24024 4.25455 4.40199 4.53615 4.56754 5.03333 5.07123 5.18310 5.20878 5.22090 5.41201 5.42292 5.42502 5.46179 5.55618 5.58639 5.61150 5.67367 5.77525 5.80938 5.93688 6.00268 6.11689 6.12467 6.15464 6.22549 6.35062 6.54148 6.57347 6.59082 6.76226 6.98049 7.00686 7.03426 7.10419 7.37002 7.51719 8.18533 8.23935 8.49310 8.79677 8.91795 9.70301 11.08293 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042750 B = 0.002779 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.808342 B =10072.554322 C =10299.829408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.075 0.925 4 C -0.119 4.119 5 C -0.136 4.136 6 C 0.160 3.840 7 H 0.089 0.911 8 N -0.745 5.745 9 C 0.699 3.301 10 O -0.595 6.595 11 N -0.738 5.738 12 C 0.147 3.853 13 C -0.065 4.065 14 C -0.125 4.125 15 C -0.125 4.125 16 C 0.022 3.978 17 C -0.591 4.591 18 H 0.053 0.947 19 C 0.013 3.987 20 N -0.915 5.915 21 Si 1.069 2.931 22 H -0.289 1.289 23 H -0.285 1.285 24 H -0.290 1.290 25 C -0.127 4.127 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.392 0.608 34 H 0.393 0.607 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.029 0.971 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.029 0.971 42 H 0.067 0.933 43 H 0.009 0.991 44 H 0.009 0.991 45 H 0.269 0.731 46 H 0.080 0.920 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.623 1.520 -5.883 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.157 4.157 5 C -0.175 4.175 6 C 0.054 3.946 7 H 0.107 0.893 8 N -0.401 5.401 9 C 0.399 3.601 10 O -0.473 6.473 11 N -0.393 5.393 12 C 0.023 3.977 13 C -0.066 4.066 14 C -0.182 4.182 15 C -0.182 4.182 16 C -0.015 4.015 17 C -0.629 4.629 18 H 0.071 0.929 19 C -0.191 4.191 20 N -0.551 5.551 21 Si 0.898 3.102 22 H -0.216 1.216 23 H -0.211 1.211 24 H -0.216 1.216 25 C -0.165 4.165 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.226 0.774 34 H 0.228 0.772 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.763 0.885 -5.634 23.466 hybrid contribution -1.723 0.394 -0.347 1.801 sum -24.486 1.279 -5.980 25.238 Atomic orbital electron populations 1.21760 0.94894 1.01859 1.01625 1.22156 0.95448 0.99191 0.94947 0.90629 1.22436 0.96049 0.99674 0.97561 1.22625 0.97051 1.02263 0.95539 1.21369 0.86511 0.93523 0.93164 0.89326 1.45294 1.07811 1.14856 1.72137 1.16049 0.80661 0.84967 0.78415 1.90906 1.79704 1.18526 1.58152 1.45351 1.09822 1.13898 1.70243 1.21465 0.78094 0.97547 1.00582 1.20758 0.97588 0.93462 0.94754 1.21739 0.97796 1.01865 0.96836 1.21737 0.98792 0.99077 0.98622 1.19221 0.88931 0.97121 0.96258 1.21996 0.95903 0.97557 1.47431 0.92857 1.25787 0.96087 1.01589 0.95649 1.70738 1.39765 1.02102 1.42536 0.83543 0.75669 0.74525 0.76496 1.21600 1.21127 1.21577 1.22776 0.94987 1.00628 0.98109 0.92562 0.92692 0.92679 0.91750 0.91485 0.91223 0.91209 0.77427 0.77205 0.92182 0.92178 0.91360 0.95192 0.93496 0.93503 0.95188 0.91370 0.97282 0.97264 0.92015 0.90162 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.27 37.16 0.34 -0.45 16 2 C -0.10 -0.65 3.50 -88.57 -0.31 -0.96 16 3 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 4 C -0.12 -0.88 6.27 -25.08 -0.16 -1.03 16 5 C -0.14 -1.33 6.59 -25.61 -0.17 -1.50 16 6 C 0.16 1.63 3.23 -66.82 -0.22 1.41 16 7 H 0.09 1.09 7.59 -51.93 -0.39 0.70 16 8 N -0.75 -8.31 4.94 -57.58 -0.28 -8.60 16 9 C 0.70 10.91 8.56 -86.92 -0.74 10.16 16 10 O -0.59 -11.86 16.01 5.29 0.08 -11.77 16 11 N -0.74 -11.01 4.96 -65.22 -0.32 -11.34 16 12 C 0.15 2.67 4.56 -4.04 -0.02 2.65 16 13 C -0.07 -1.25 0.54 -154.51 -0.08 -1.34 16 14 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 15 C -0.12 -2.23 8.05 37.16 0.30 -1.93 16 16 C 0.02 0.55 3.35 -27.88 -0.09 0.45 16 17 C -0.59 -15.90 7.65 -34.44 -0.26 -16.16 16 18 H 0.05 1.39 5.68 -52.48 -0.30 1.10 16 19 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 20 N -0.91 -27.89 13.65 55.43 0.76 -27.13 16 21 Si 1.07 25.03 29.90 -169.99 -5.08 19.95 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 C -0.13 -0.92 5.89 -25.01 -0.15 -1.06 16 26 H 0.06 0.30 8.12 -51.93 -0.42 -0.12 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.45 8.05 -51.93 -0.42 0.04 16 31 H 0.07 0.78 7.92 -51.93 -0.41 0.37 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.39 3.33 8.58 -40.82 -0.35 2.98 16 34 H 0.39 4.91 6.18 -40.82 -0.25 4.66 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 38 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 42 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 43 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 44 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 45 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 46 H 0.08 0.53 8.03 -51.93 -0.42 0.12 16 47 H 0.07 0.50 7.98 -51.92 -0.41 0.08 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -32.00 363.36 -9.23 -41.24 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.50 Total: 3.61 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -1.36 Total: -11.44 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.15 Total: -47.07 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.95 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.00 -9.23 -41.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355351194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.253 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds