Wall clock time and date at job start Tue Mar 31 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.67328 * 2 1 4 4 C 1.54882 * 110.76161 * 236.76097 * 2 1 3 5 5 C 1.54264 * 104.20158 * 203.74237 * 4 2 1 6 6 C 1.53882 * 106.59491 * 23.60825 * 5 4 2 7 7 H 1.09005 * 110.02864 * 119.33077 * 6 5 4 8 8 N 1.46492 * 110.03058 * 240.71530 * 6 5 4 9 9 C 1.34781 * 120.00297 * 272.90518 * 8 6 5 10 10 O 1.21583 * 119.99716 * 0.02562 * 9 8 6 11 11 N 1.34775 * 120.00055 * 180.02562 * 9 8 6 12 12 C 1.46504 * 119.99669 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46858 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47258 * 60.00017 * 13 12 11 15 15 C 1.53001 * 109.47247 * 299.99871 * 13 12 11 16 16 C 1.53003 * 109.46867 * 179.97438 * 13 12 11 17 17 C 1.50703 * 109.47038 * 180.02562 * 16 13 12 18 18 H 1.08006 * 120.00159 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00120 * 180.02562 * 17 16 13 20 20 N 1.31514 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 C 1.54262 * 106.63724 * 0.02656 * 6 5 4 26 26 H 1.08997 * 109.46945 * 181.77955 * 1 2 3 27 27 H 1.08994 * 109.47466 * 301.78857 * 1 2 3 28 28 H 1.09004 * 109.47185 * 61.78906 * 1 2 3 29 29 H 1.09003 * 110.48742 * 85.06438 * 4 2 1 30 30 H 1.09005 * 110.59801 * 322.48110 * 4 2 1 31 31 H 1.09001 * 110.03653 * 264.32471 * 5 4 2 32 32 H 1.08998 * 110.07723 * 142.91265 * 5 4 2 33 33 H 0.97003 * 119.99978 * 92.91002 * 8 6 5 34 34 H 0.96994 * 120.00039 * 0.02562 * 11 9 8 35 35 H 1.08996 * 109.46998 * 59.99975 * 12 11 9 36 36 H 1.09004 * 109.47081 * 299.99839 * 12 11 9 37 37 H 1.09000 * 109.47249 * 179.97438 * 14 13 12 38 38 H 1.08996 * 109.46941 * 299.99988 * 14 13 12 39 39 H 1.08996 * 109.47114 * 60.00036 * 14 13 12 40 40 H 1.08996 * 109.47108 * 300.00452 * 15 13 12 41 41 H 1.08996 * 109.47041 * 59.99958 * 15 13 12 42 42 H 1.09000 * 109.47105 * 180.02562 * 15 13 12 43 43 H 1.09003 * 109.46825 * 60.00325 * 16 13 12 44 44 H 1.08996 * 109.47396 * 299.99898 * 16 13 12 45 45 H 0.96998 * 119.99255 * 0.02562 * 20 19 17 46 46 H 1.08998 * 110.48833 * 95.04947 * 25 6 5 47 47 H 1.09008 * 110.48432 * 217.68616 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0199 0.0000 4 6 2.0790 -0.7938 -1.2113 5 6 3.4932 -1.2254 -0.7714 6 6 3.4931 -1.2280 0.7674 7 1 3.7128 -2.2289 1.1391 8 7 4.4869 -0.2768 1.2708 9 6 5.7652 -0.6668 1.4455 10 8 6.0936 -1.8080 1.1848 11 7 6.6794 0.2083 1.9091 12 6 8.0689 -0.2156 2.0984 13 6 8.8924 0.9591 2.6303 14 6 8.3139 1.4230 3.9686 15 6 8.8433 2.1125 1.6262 16 6 10.3435 0.5162 2.8286 17 6 11.1545 1.6731 3.3531 18 1 10.6823 2.6287 3.5272 19 6 12.4995 1.5118 3.6098 20 7 13.0747 0.3483 3.3974 21 14 13.5046 2.9456 4.2606 22 1 14.0680 3.7130 3.1208 23 1 14.6117 2.4307 5.1059 24 1 12.6334 3.8328 5.0723 25 6 2.0790 -0.7986 1.2098 26 1 -0.3633 -1.0271 0.0319 27 1 -0.3634 0.5413 0.8734 28 1 -0.3634 0.4858 -0.9056 29 1 2.1321 -0.1556 -2.0933 30 1 1.4582 -1.6674 -1.4105 31 1 4.2327 -0.5164 -1.1435 32 1 3.7129 -2.2250 -1.1464 33 1 4.2250 0.6339 1.4786 34 1 6.4173 1.1186 2.1175 35 1 8.4809 -0.5465 1.1451 36 1 8.1039 -1.0370 2.8142 37 1 8.9008 2.2596 4.3477 38 1 7.2801 1.7383 3.8277 39 1 8.3489 0.6014 4.6839 40 1 9.2554 1.7820 0.6728 41 1 7.8095 2.4278 1.4853 42 1 9.4304 2.9491 2.0049 43 1 10.7559 0.1855 1.8754 44 1 10.3781 -0.3052 3.5441 45 1 12.5526 -0.3962 3.0598 46 1 1.4579 -1.6731 1.4036 47 1 2.1323 -0.1638 2.0943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355351194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:26 Heat of formation + Delta-G solvation = -92.460296 kcal Electronic energy + Delta-G solvation = -22653.526273 eV Core-core repulsion = 19447.682778 eV Total energy + Delta-G solvation = -3205.843494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.35901 -39.56837 -38.55745 -35.44639 -34.96296 -33.83888 -31.35942 -29.39748 -28.59388 -28.04818 -27.45435 -25.66039 -24.81061 -22.26975 -21.21250 -20.85980 -20.38164 -19.34808 -18.45073 -17.48065 -16.67929 -16.30298 -16.18979 -15.75745 -15.55839 -15.37037 -15.21105 -15.00212 -14.44294 -14.29308 -13.97031 -13.67421 -13.63118 -13.05874 -13.03878 -12.90826 -12.77418 -12.61911 -12.38290 -12.27856 -11.94223 -11.92208 -11.86335 -11.66452 -11.63322 -11.42407 -11.40336 -11.38883 -11.18847 -10.50415 -10.48461 -10.37825 -9.77163 -8.59107 -6.28082 1.54798 1.64026 1.70465 1.80022 2.13648 2.61302 3.24244 3.31253 3.61347 3.62475 3.87940 3.93293 3.99217 4.11313 4.38754 4.42201 4.52108 4.57878 4.60985 4.63609 4.66964 4.69119 4.79649 4.83906 4.88888 4.98254 5.02162 5.03284 5.07888 5.14012 5.20733 5.26333 5.32116 5.33417 5.33765 5.38929 5.46332 5.50948 5.56896 5.65216 5.66173 6.00097 6.10732 6.28317 6.65589 7.10984 7.52815 7.58530 8.80887 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042750 B = 0.002779 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.808342 B =10072.554322 C =10299.829408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.080 0.920 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.154 3.846 7 H 0.063 0.937 8 N -0.724 5.724 9 C 0.697 3.303 10 O -0.642 6.642 11 N -0.725 5.725 12 C 0.162 3.838 13 C -0.057 4.057 14 C -0.119 4.119 15 C -0.119 4.119 16 C 0.022 3.978 17 C -0.587 4.587 18 H 0.066 0.934 19 C -0.048 4.048 20 N -0.948 5.948 21 Si 1.117 2.883 22 H -0.276 1.276 23 H -0.291 1.291 24 H -0.264 1.264 25 C -0.117 4.117 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.410 0.590 34 H 0.410 0.590 35 H 0.040 0.960 36 H 0.041 0.959 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.055 0.945 43 H -0.019 1.019 44 H -0.019 1.019 45 H 0.252 0.748 46 H 0.088 0.912 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.426 4.178 -5.642 28.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.099 0.901 4 C -0.151 4.151 5 C -0.175 4.175 6 C 0.049 3.951 7 H 0.081 0.919 8 N -0.380 5.380 9 C 0.396 3.604 10 O -0.524 6.524 11 N -0.381 5.381 12 C 0.037 3.963 13 C -0.058 4.058 14 C -0.177 4.177 15 C -0.177 4.177 16 C -0.015 4.015 17 C -0.625 4.625 18 H 0.084 0.916 19 C -0.244 4.244 20 N -0.586 5.586 21 Si 0.939 3.061 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.188 1.188 25 C -0.155 4.155 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.247 0.753 34 H 0.247 0.753 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.074 0.926 43 H -0.001 1.001 44 H 0.000 1.000 45 H 0.062 0.938 46 H 0.107 0.893 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -25.643 3.598 -5.397 26.451 hybrid contribution -0.910 -0.501 -0.465 1.138 sum -26.553 3.097 -5.861 27.368 Atomic orbital electron populations 1.21740 0.93797 1.02201 1.02183 1.22137 0.96254 0.99026 0.93749 0.90116 1.22412 0.94283 1.00211 0.98225 1.22583 0.98493 1.01186 0.95206 1.21507 0.87851 0.92279 0.93445 0.91899 1.45131 1.06184 1.15927 1.70748 1.16221 0.81800 0.84233 0.78112 1.90883 1.80724 1.20709 1.60076 1.44989 1.08305 1.14602 1.70223 1.21017 0.79825 0.96526 0.98932 1.20585 0.94236 0.94347 0.96602 1.21672 0.99967 1.00854 0.95161 1.21672 1.01218 0.97570 0.97202 1.19164 0.92680 0.95826 0.93850 1.22367 0.96024 0.98352 1.45722 0.91609 1.27361 0.98310 1.03073 0.95657 1.70884 1.39881 1.02818 1.45048 0.82930 0.74562 0.71991 0.76582 1.20158 1.21677 1.18799 1.22743 0.92639 1.01306 0.98829 0.92379 0.92033 0.92258 0.91199 0.90813 0.92669 0.92581 0.75300 0.75264 0.94142 0.94078 0.92601 0.90936 0.94633 0.94683 0.90961 0.92551 1.00078 1.00033 0.93833 0.89321 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.27 71.98 0.67 -0.45 16 2 C -0.09 -0.94 3.50 -9.46 -0.03 -0.97 16 3 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 4 C -0.11 -1.44 6.27 31.67 0.20 -1.24 16 5 C -0.14 -2.57 6.59 31.32 0.21 -2.36 16 6 C 0.15 2.97 3.23 45.72 0.15 3.12 16 7 H 0.06 1.56 7.59 -2.38 -0.02 1.55 16 8 N -0.72 -14.83 4.94 -454.35 -2.25 -17.08 16 9 C 0.70 21.18 8.56 179.05 1.53 22.71 16 10 O -0.64 -26.15 16.01 -3.98 -0.06 -26.21 16 11 N -0.72 -20.47 4.96 -478.53 -2.37 -22.84 16 12 C 0.16 5.96 4.56 86.38 0.39 6.36 16 13 C -0.06 -2.18 0.54 -52.18 -0.03 -2.21 16 14 C -0.12 -4.04 8.05 71.98 0.58 -3.47 16 15 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 16 C 0.02 1.14 3.35 29.85 0.10 1.24 16 17 C -0.59 -31.83 7.65 25.60 0.20 -31.63 16 18 H 0.07 3.36 5.68 -2.91 -0.02 3.35 16 19 C -0.05 -2.74 5.46 84.65 0.46 -2.28 16 20 N -0.95 -59.72 13.65 21.45 0.29 -59.43 16 21 Si 1.12 49.92 29.90 68.60 2.05 51.98 16 22 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 25 C -0.12 -1.39 5.89 31.71 0.19 -1.20 16 26 H 0.06 0.45 8.12 -2.39 -0.02 0.43 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.85 8.05 -2.38 -0.02 0.83 16 31 H 0.05 1.20 7.92 -2.39 -0.02 1.18 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.41 5.59 8.58 -92.71 -0.80 4.79 16 34 H 0.41 8.75 6.18 -92.71 -0.57 8.18 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.04 1.66 8.14 -2.38 -0.02 1.65 16 37 H 0.05 2.04 6.62 -2.39 -0.02 2.03 16 38 H 0.07 1.83 6.86 -2.39 -0.02 1.81 16 39 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.83 6.86 -2.39 -0.02 1.81 16 42 H 0.06 2.06 6.62 -2.39 -0.02 2.04 16 43 H -0.02 -1.07 8.01 -2.39 -0.02 -1.09 16 44 H -0.02 -1.05 8.01 -2.39 -0.02 -1.07 16 45 H 0.25 16.27 7.22 -92.71 -0.67 15.61 16 46 H 0.09 0.95 8.03 -2.39 -0.02 0.93 16 47 H 0.08 0.85 7.98 -2.38 -0.02 0.83 16 Total: -1.00 -72.74 363.36 2.53 -70.22 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.32 Total: 19.21 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 5.19 Total: -15.84 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -4.33 Total: -99.34 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.06 Total: -26.21 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 2.05 Total: 51.98 kcal Total: -72.74 2.53 -70.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355351194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.244 kcal (2) G-P(sol) polarization free energy of solvation -72.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds