Wall clock time and date at job start Tue Mar 31 2020 06:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47163 * 2 1 4 4 C 1.50696 * 109.46956 * 120.00156 * 2 1 3 5 5 O 1.21273 * 120.00535 * 96.80712 * 4 2 1 6 6 N 1.34780 * 119.99866 * 276.80282 * 4 2 1 7 7 C 1.46929 * 120.63045 * 4.44893 * 6 4 2 8 8 C 1.53619 * 108.54458 * 126.36591 * 7 6 4 9 9 H 1.09000 * 109.65899 * 294.84509 * 8 7 6 10 10 C 1.53007 * 109.43094 * 174.72258 * 8 7 6 11 11 C 1.53045 * 109.24267 * 54.85550 * 8 7 6 12 12 C 1.53032 * 109.53786 * 298.51030 * 11 8 7 13 13 H 1.08994 * 109.52727 * 181.33418 * 12 11 8 14 14 C 1.53007 * 109.49635 * 301.41356 * 12 11 8 15 15 C 1.46925 * 120.63430 * 184.72331 * 6 4 2 16 16 N 1.46901 * 109.47014 * 239.99824 * 2 1 3 17 17 C 1.46890 * 111.00164 * 310.77586 * 16 2 1 18 18 C 1.46901 * 110.99974 * 74.73234 * 16 2 1 19 19 C 1.50697 * 109.47115 * 169.99444 * 18 16 2 20 20 H 1.08004 * 120.00371 * 0.02562 * 19 18 16 21 21 C 1.37878 * 120.00133 * 179.97438 * 19 18 16 22 22 N 1.31518 * 119.99751 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00068 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47400 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.47170 * 300.00035 * 23 21 19 26 26 H 1.48502 * 109.47504 * 60.00245 * 23 21 19 27 27 H 1.09003 * 109.47362 * 185.23277 * 1 2 3 28 28 H 1.09005 * 109.47246 * 305.23695 * 1 2 3 29 29 H 1.09004 * 109.46697 * 65.23721 * 1 2 3 30 30 H 1.09007 * 109.58394 * 246.20184 * 7 6 4 31 31 H 1.08997 * 109.58698 * 6.62412 * 7 6 4 32 32 H 1.08995 * 109.46996 * 300.28868 * 10 8 7 33 33 H 1.09006 * 109.46889 * 60.28962 * 10 8 7 34 34 H 1.08994 * 109.47142 * 180.28773 * 10 8 7 35 35 H 1.09004 * 109.45421 * 178.48827 * 11 8 7 36 36 H 1.08998 * 109.45549 * 58.53129 * 11 8 7 37 37 H 1.09001 * 109.46963 * 179.83572 * 14 12 11 38 38 H 1.08997 * 109.47096 * 299.83863 * 14 12 11 39 39 H 1.08996 * 109.46955 * 59.83955 * 14 12 11 40 40 H 1.09002 * 109.58329 * 353.37312 * 15 6 4 41 41 H 1.08993 * 109.58801 * 113.65295 * 15 6 4 42 42 H 1.09005 * 109.47599 * 188.59062 * 17 16 2 43 43 H 1.08997 * 109.47237 * 308.59249 * 17 16 2 44 44 H 1.08999 * 109.47284 * 68.59469 * 17 16 2 45 45 H 1.09005 * 109.46761 * 49.99824 * 18 16 2 46 46 H 1.08991 * 109.46865 * 289.99822 * 18 16 2 47 47 H 0.97001 * 119.99976 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3518 -1.8787 1.1682 6 7 2.1265 -0.0474 2.4001 7 6 1.6529 1.3386 2.5152 8 6 0.6671 1.4221 3.6904 9 1 -0.2193 0.8278 3.4685 10 6 0.2616 2.8807 3.9121 11 6 1.3413 0.8817 4.9536 12 6 1.7178 -0.5868 4.7446 13 1 2.1765 -0.9781 5.6526 14 6 0.4601 -1.3950 4.4187 15 6 2.7104 -0.6949 3.5827 16 7 2.0197 -0.6925 -1.1994 17 6 1.3507 -1.9893 -1.3685 18 6 1.8546 0.1449 -2.3951 19 6 2.5826 -0.4855 -3.5542 20 1 3.1143 -1.4155 -3.4167 21 6 2.5690 0.1243 -4.7907 22 7 1.9211 1.2565 -4.9584 23 14 3.4708 -0.6574 -6.2277 24 1 3.3041 0.1891 -7.4364 25 1 4.9147 -0.7745 -5.9013 26 1 2.9109 -2.0080 -6.4878 27 1 -0.3634 -1.0234 0.0937 28 1 -0.3634 0.5929 0.8394 29 1 -0.3633 0.4305 -0.9332 30 1 2.4998 2.0003 2.6973 31 1 1.1500 1.6307 1.5933 32 1 1.1484 3.4747 4.1329 33 1 -0.2186 3.2651 3.0122 34 1 -0.4339 2.9412 4.7491 35 1 0.6540 0.9641 5.7956 36 1 2.2408 1.4612 5.1613 37 1 0.7292 -2.4403 4.2670 38 1 -0.2458 -1.3177 5.2456 39 1 0.0011 -1.0026 3.5113 40 1 2.9055 -1.7450 3.3654 41 1 3.6430 -0.1974 3.8486 42 1 1.8353 -2.5464 -2.1705 43 1 1.4178 -2.5565 -0.4402 44 1 0.3027 -1.8274 -1.6205 45 1 2.2655 1.1362 -2.2038 46 1 0.7949 0.2308 -2.6349 47 1 1.9112 1.6854 -5.8284 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355451721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:30 Heat of formation + Delta-G solvation = -38.356773 kcal Electronic energy + Delta-G solvation = -23982.021174 eV Core-core repulsion = 20778.523785 eV Total energy + Delta-G solvation = -3203.497390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.47511 -38.26053 -36.25584 -33.69886 -33.43511 -32.60709 -30.12697 -27.18463 -26.91432 -26.86553 -25.92392 -25.07671 -23.29585 -21.75490 -20.59585 -19.29297 -18.32073 -17.03106 -16.42038 -15.64614 -15.33038 -15.11657 -14.74673 -14.35800 -14.23558 -13.99940 -13.84302 -13.77756 -13.19818 -12.90478 -12.75117 -12.34182 -12.26065 -12.10348 -11.93457 -11.75259 -11.66057 -11.44856 -11.20197 -11.07455 -10.99573 -10.88877 -10.76514 -10.63310 -10.61770 -10.45893 -10.29828 -9.91747 -9.32379 -8.88946 -8.46250 -8.39425 -7.14977 -6.00043 -4.00266 3.00740 3.12046 3.37323 3.40211 3.44734 4.41900 4.46859 4.54894 4.61369 4.78989 4.92734 5.02685 5.08296 5.19333 5.27401 5.35001 5.35933 5.44449 5.47419 5.49148 5.54264 5.60280 5.65397 5.69058 5.79874 5.81810 5.87711 5.95783 5.96445 6.03990 6.06310 6.12580 6.27429 6.38624 6.44671 6.54581 6.68881 7.01760 7.28945 7.37150 7.58012 7.85145 8.10058 8.25222 8.54080 8.61441 9.07575 9.63628 11.10969 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028688 B = 0.004025 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.785327 B = 6954.047450 C = 7415.337432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.064 3.936 3 H 0.094 0.906 4 C 0.531 3.469 5 O -0.525 6.525 6 N -0.617 5.617 7 C 0.109 3.891 8 C -0.110 4.110 9 H 0.079 0.921 10 C -0.146 4.146 11 C -0.108 4.108 12 C -0.106 4.106 13 H 0.078 0.922 14 C -0.144 4.144 15 C 0.116 3.884 16 N -0.520 5.520 17 C 0.030 3.970 18 C 0.194 3.806 19 C -0.504 4.504 20 H 0.063 0.937 21 C 0.055 3.945 22 N -0.901 5.901 23 Si 0.899 3.101 24 H -0.288 1.288 25 H -0.276 1.276 26 H -0.277 1.277 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.010 0.990 45 H 0.028 0.972 46 H -0.006 1.006 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 2.030 21.056 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.049 4.049 3 H 0.112 0.888 4 C 0.319 3.681 5 O -0.399 6.399 6 N -0.352 5.352 7 C -0.014 4.014 8 C -0.129 4.129 9 H 0.097 0.903 10 C -0.204 4.204 11 C -0.145 4.145 12 C -0.125 4.125 13 H 0.096 0.904 14 C -0.202 4.202 15 C -0.007 4.007 16 N -0.244 5.244 17 C -0.118 4.118 18 C 0.069 3.931 19 C -0.543 4.543 20 H 0.082 0.918 21 C -0.146 4.146 22 N -0.541 5.541 23 Si 0.726 3.274 24 H -0.214 1.214 25 H -0.202 1.202 26 H -0.203 1.203 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.028 0.972 45 H 0.046 0.954 46 H 0.012 0.988 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.555 1.421 20.900 21.248 hybrid contribution -0.408 0.032 -0.934 1.020 sum -3.963 1.453 19.966 20.407 Atomic orbital electron populations 1.22395 0.95985 1.02504 1.02722 1.21623 0.93728 0.98515 0.90997 0.88836 1.20884 0.76611 0.86899 0.83701 1.90572 1.48636 1.16461 1.84276 1.48085 1.62670 1.14108 1.10303 1.21944 0.97369 0.82729 0.99360 1.21645 0.98861 0.97054 0.95321 0.90313 1.21782 1.01435 0.95283 1.01913 1.21601 1.00477 0.95275 0.97191 1.21487 0.96881 0.95925 0.98235 0.90407 1.21818 0.97031 0.99854 1.01465 1.21550 0.94814 0.99887 0.84456 1.62070 1.55716 1.04346 1.02306 1.22430 0.95206 0.91971 1.02167 1.19789 0.95401 0.92373 0.85521 1.21129 1.31662 1.08309 0.93212 0.91849 1.24966 0.95756 0.95033 0.98811 1.69947 1.42823 1.17352 1.23963 0.86549 0.80342 0.79090 0.81371 1.21393 1.20164 1.20263 0.92017 0.92698 0.90796 0.91463 0.89203 0.92468 0.92232 0.92489 0.91869 0.91807 0.92708 0.93060 0.92222 0.89054 0.91964 0.91490 0.90976 0.97178 0.95436 0.98779 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 8.00 37.16 0.30 -2.52 16 2 C 0.06 1.18 1.84 -68.87 -0.13 1.05 16 3 H 0.09 1.65 6.52 -51.93 -0.34 1.31 16 4 C 0.53 9.26 6.85 -10.99 -0.08 9.18 16 5 O -0.52 -10.82 13.44 5.56 0.07 -10.75 16 6 N -0.62 -8.24 2.41 -172.51 -0.41 -8.66 16 7 C 0.11 1.16 5.25 -3.49 -0.02 1.14 16 8 C -0.11 -0.94 2.54 -90.27 -0.23 -1.17 16 9 H 0.08 0.74 6.33 -51.93 -0.33 0.42 16 10 C -0.15 -1.04 9.20 37.16 0.34 -0.70 16 11 C -0.11 -0.85 4.71 -26.69 -0.13 -0.98 16 12 C -0.11 -0.96 3.21 -90.50 -0.29 -1.25 16 13 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 14 C -0.14 -1.44 8.71 37.16 0.32 -1.11 16 15 C 0.12 1.35 5.83 -3.71 -0.02 1.33 16 16 N -0.52 -11.93 4.54 -237.74 -1.08 -13.01 16 17 C 0.03 0.66 8.00 60.06 0.48 1.15 16 18 C 0.19 5.10 4.40 -4.98 -0.02 5.08 16 19 C -0.50 -14.53 8.58 -34.44 -0.30 -14.83 16 20 H 0.06 1.84 7.10 -52.48 -0.37 1.47 16 21 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 23 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 H 0.06 1.01 6.84 -51.93 -0.36 0.65 16 28 H 0.05 0.70 6.86 -51.93 -0.36 0.34 16 29 H 0.07 1.29 6.92 -51.93 -0.36 0.93 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.99 4.66 -51.93 -0.24 0.75 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.68 5.97 -51.93 -0.31 0.37 16 40 H 0.09 1.24 7.00 -51.93 -0.36 0.88 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.55 6.99 -51.93 -0.36 1.19 16 43 H 0.07 1.53 5.51 -51.93 -0.29 1.25 16 44 H 0.01 0.21 6.82 -51.93 -0.35 -0.15 16 45 H 0.03 0.76 7.87 -51.93 -0.41 0.35 16 46 H -0.01 -0.15 7.06 -51.93 -0.37 -0.52 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -31.94 349.30 -8.47 -40.41 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -8.17 Total: -2.09 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 0.14 Total: -2.16 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.76 Total: -47.73 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.07 Total: -10.75 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.94 -8.47 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355451721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.055 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds