Wall clock time and date at job start Tue Mar 31 2020 06:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47163 * 2 1 4 4 C 1.50696 * 109.46956 * 120.00156 * 2 1 3 5 5 O 1.21273 * 120.00535 * 96.80712 * 4 2 1 6 6 N 1.34780 * 119.99866 * 276.80282 * 4 2 1 7 7 C 1.46929 * 120.63045 * 4.44893 * 6 4 2 8 8 C 1.53619 * 108.54458 * 126.36591 * 7 6 4 9 9 H 1.09000 * 109.65899 * 294.84509 * 8 7 6 10 10 C 1.53007 * 109.43094 * 174.72258 * 8 7 6 11 11 C 1.53045 * 109.24267 * 54.85550 * 8 7 6 12 12 C 1.53032 * 109.53786 * 298.51030 * 11 8 7 13 13 H 1.08994 * 109.52727 * 181.33418 * 12 11 8 14 14 C 1.53007 * 109.49635 * 301.41356 * 12 11 8 15 15 C 1.46925 * 120.63430 * 184.72331 * 6 4 2 16 16 N 1.46901 * 109.47014 * 239.99824 * 2 1 3 17 17 C 1.46890 * 111.00164 * 310.77586 * 16 2 1 18 18 C 1.46901 * 110.99974 * 74.73234 * 16 2 1 19 19 C 1.50697 * 109.47115 * 169.99444 * 18 16 2 20 20 H 1.08004 * 120.00371 * 0.02562 * 19 18 16 21 21 C 1.37878 * 120.00133 * 179.97438 * 19 18 16 22 22 N 1.31518 * 119.99751 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00068 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47400 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.47170 * 300.00035 * 23 21 19 26 26 H 1.48502 * 109.47504 * 60.00245 * 23 21 19 27 27 H 1.09003 * 109.47362 * 185.23277 * 1 2 3 28 28 H 1.09005 * 109.47246 * 305.23695 * 1 2 3 29 29 H 1.09004 * 109.46697 * 65.23721 * 1 2 3 30 30 H 1.09007 * 109.58394 * 246.20184 * 7 6 4 31 31 H 1.08997 * 109.58698 * 6.62412 * 7 6 4 32 32 H 1.08995 * 109.46996 * 300.28868 * 10 8 7 33 33 H 1.09006 * 109.46889 * 60.28962 * 10 8 7 34 34 H 1.08994 * 109.47142 * 180.28773 * 10 8 7 35 35 H 1.09004 * 109.45421 * 178.48827 * 11 8 7 36 36 H 1.08998 * 109.45549 * 58.53129 * 11 8 7 37 37 H 1.09001 * 109.46963 * 179.83572 * 14 12 11 38 38 H 1.08997 * 109.47096 * 299.83863 * 14 12 11 39 39 H 1.08996 * 109.46955 * 59.83955 * 14 12 11 40 40 H 1.09002 * 109.58329 * 353.37312 * 15 6 4 41 41 H 1.08993 * 109.58801 * 113.65295 * 15 6 4 42 42 H 1.09005 * 109.47599 * 188.59062 * 17 16 2 43 43 H 1.08997 * 109.47237 * 308.59249 * 17 16 2 44 44 H 1.08999 * 109.47284 * 68.59469 * 17 16 2 45 45 H 1.09005 * 109.46761 * 49.99824 * 18 16 2 46 46 H 1.08991 * 109.46865 * 289.99822 * 18 16 2 47 47 H 0.97001 * 119.99976 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3518 -1.8787 1.1682 6 7 2.1265 -0.0474 2.4001 7 6 1.6529 1.3386 2.5152 8 6 0.6671 1.4221 3.6904 9 1 -0.2193 0.8278 3.4685 10 6 0.2616 2.8807 3.9121 11 6 1.3413 0.8817 4.9536 12 6 1.7178 -0.5868 4.7446 13 1 2.1765 -0.9781 5.6526 14 6 0.4601 -1.3950 4.4187 15 6 2.7104 -0.6949 3.5827 16 7 2.0197 -0.6925 -1.1994 17 6 1.3507 -1.9893 -1.3685 18 6 1.8546 0.1449 -2.3951 19 6 2.5826 -0.4855 -3.5542 20 1 3.1143 -1.4155 -3.4167 21 6 2.5690 0.1243 -4.7907 22 7 1.9211 1.2565 -4.9584 23 14 3.4708 -0.6574 -6.2277 24 1 3.3041 0.1891 -7.4364 25 1 4.9147 -0.7745 -5.9013 26 1 2.9109 -2.0080 -6.4878 27 1 -0.3634 -1.0234 0.0937 28 1 -0.3634 0.5929 0.8394 29 1 -0.3633 0.4305 -0.9332 30 1 2.4998 2.0003 2.6973 31 1 1.1500 1.6307 1.5933 32 1 1.1484 3.4747 4.1329 33 1 -0.2186 3.2651 3.0122 34 1 -0.4339 2.9412 4.7491 35 1 0.6540 0.9641 5.7956 36 1 2.2408 1.4612 5.1613 37 1 0.7292 -2.4403 4.2670 38 1 -0.2458 -1.3177 5.2456 39 1 0.0011 -1.0026 3.5113 40 1 2.9055 -1.7450 3.3654 41 1 3.6430 -0.1974 3.8486 42 1 1.8353 -2.5464 -2.1705 43 1 1.4178 -2.5565 -0.4402 44 1 0.3027 -1.8274 -1.6205 45 1 2.2655 1.1362 -2.2038 46 1 0.7949 0.2308 -2.6349 47 1 1.9112 1.6854 -5.8284 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355451721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:29 Heat of formation + Delta-G solvation = -58.314114 kcal Electronic energy + Delta-G solvation = -23982.886589 eV Core-core repulsion = 20778.523785 eV Total energy + Delta-G solvation = -3204.362805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65853 -39.45051 -37.86004 -34.96643 -34.60830 -34.16507 -31.72085 -29.03405 -27.98566 -27.52885 -27.27155 -26.57081 -24.91159 -22.80990 -21.96699 -20.48638 -19.35811 -18.61939 -18.24789 -16.95214 -16.65391 -16.40076 -16.10770 -15.75551 -15.47134 -15.23515 -15.00221 -14.95031 -14.55172 -14.21369 -14.09654 -13.74415 -13.46030 -13.29831 -13.01953 -12.90244 -12.83769 -12.72204 -12.57141 -12.52088 -12.49498 -12.37351 -12.21616 -11.96958 -11.92961 -11.67861 -11.41969 -11.36690 -11.11677 -10.60560 -10.41706 -9.55289 -8.97863 -8.20776 -6.29787 1.40371 1.43369 1.51289 1.63532 1.97424 2.41080 3.11608 3.34658 3.51802 3.74369 3.88781 3.93783 4.00017 4.03730 4.09589 4.23927 4.42194 4.52064 4.56555 4.61453 4.63676 4.67355 4.71604 4.73119 4.79554 4.84693 4.89496 4.94006 5.03212 5.08570 5.13184 5.13585 5.19261 5.22097 5.29092 5.31032 5.33910 5.43582 5.56971 5.64455 5.67625 6.02619 6.29667 6.36674 6.62356 6.84565 7.24963 7.39278 8.89798 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028688 B = 0.004025 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.785327 B = 6954.047450 C = 7415.337432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.061 3.939 3 H 0.099 0.901 4 C 0.530 3.470 5 O -0.565 6.565 6 N -0.606 5.606 7 C 0.101 3.899 8 C -0.104 4.104 9 H 0.071 0.929 10 C -0.143 4.143 11 C -0.104 4.104 12 C -0.099 4.099 13 H 0.098 0.902 14 C -0.143 4.143 15 C 0.111 3.889 16 N -0.537 5.537 17 C 0.042 3.958 18 C 0.213 3.787 19 C -0.529 4.529 20 H 0.054 0.946 21 C 0.008 3.992 22 N -0.930 5.930 23 Si 0.966 3.034 24 H -0.278 1.278 25 H -0.271 1.271 26 H -0.270 1.270 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.079 0.921 44 H 0.014 0.986 45 H 0.009 0.991 46 H -0.025 1.025 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.257 2.845 22.791 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.051 4.051 3 H 0.117 0.883 4 C 0.318 3.682 5 O -0.444 6.444 6 N -0.339 5.339 7 C -0.021 4.021 8 C -0.123 4.123 9 H 0.089 0.911 10 C -0.200 4.200 11 C -0.141 4.141 12 C -0.118 4.118 13 H 0.116 0.884 14 C -0.200 4.200 15 C -0.011 4.011 16 N -0.261 5.261 17 C -0.106 4.106 18 C 0.087 3.913 19 C -0.567 4.567 20 H 0.072 0.928 21 C -0.191 4.191 22 N -0.570 5.570 23 Si 0.790 3.210 24 H -0.203 1.203 25 H -0.196 1.196 26 H -0.195 1.195 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.032 0.968 45 H 0.027 0.973 46 H -0.007 1.007 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.613 2.270 22.688 23.086 hybrid contribution -0.394 -0.173 -1.378 1.443 sum -4.007 2.097 21.310 21.785 Atomic orbital electron populations 1.22260 0.94093 1.02720 1.03282 1.21699 0.95332 0.98366 0.89744 0.88312 1.20617 0.76652 0.86425 0.84517 1.90548 1.50804 1.17991 1.85023 1.48082 1.61310 1.14977 1.09505 1.22218 0.98520 0.81069 1.00323 1.21597 0.97859 0.98180 0.94651 0.91074 1.21754 1.01997 0.93992 1.02286 1.21599 1.01274 0.94037 0.97191 1.21474 0.95700 0.97043 0.97580 0.88395 1.21800 0.97821 0.98975 1.01404 1.21740 0.96333 0.98547 0.84528 1.61912 1.57049 1.04533 1.02621 1.22288 0.95016 0.91503 1.01749 1.19412 0.93603 0.91765 0.86532 1.21411 1.32285 1.08346 0.94657 0.92766 1.25807 0.96355 0.95445 1.01459 1.70049 1.43649 1.18420 1.24860 0.85497 0.79071 0.78428 0.77986 1.20319 1.19637 1.19545 0.92512 0.89189 0.92482 0.90058 0.89828 0.91748 0.92512 0.91341 0.90147 0.90746 0.94228 0.91205 0.93907 0.91435 0.90431 0.93437 0.90243 0.96754 0.97328 1.00716 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.25 8.00 71.98 0.58 -4.67 16 2 C 0.06 2.26 1.84 44.17 0.08 2.34 16 3 H 0.10 3.52 6.52 -2.38 -0.02 3.50 16 4 C 0.53 18.59 6.85 87.66 0.60 19.19 16 5 O -0.57 -23.86 13.44 -3.01 -0.04 -23.90 16 6 N -0.61 -15.63 2.41 -818.08 -1.97 -17.59 16 7 C 0.10 1.95 5.25 86.51 0.45 2.41 16 8 C -0.10 -1.49 2.54 -10.57 -0.03 -1.52 16 9 H 0.07 1.17 6.33 -2.39 -0.02 1.15 16 10 C -0.14 -1.59 9.20 71.98 0.66 -0.92 16 11 C -0.10 -1.26 4.71 30.62 0.14 -1.12 16 12 C -0.10 -1.55 3.21 -10.72 -0.03 -1.58 16 13 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 14 C -0.14 -2.61 8.71 71.98 0.63 -1.98 16 15 C 0.11 2.43 5.83 86.36 0.50 2.94 16 16 N -0.54 -25.37 4.54 -906.07 -4.12 -29.49 16 17 C 0.04 1.92 8.00 127.69 1.02 2.94 16 18 C 0.21 11.57 4.40 85.56 0.38 11.95 16 19 C -0.53 -31.19 8.58 25.60 0.22 -30.97 16 20 H 0.05 3.23 7.10 -2.91 -0.02 3.21 16 21 C 0.01 0.45 5.46 84.65 0.46 0.91 16 22 N -0.93 -55.88 13.29 21.45 0.28 -55.59 16 23 Si 0.97 45.44 29.54 68.60 2.03 47.46 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 27 H 0.06 1.86 6.84 -2.39 -0.02 1.84 16 28 H 0.09 2.19 6.86 -2.38 -0.02 2.18 16 29 H 0.06 2.02 6.92 -2.38 -0.02 2.00 16 30 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.08 1.73 4.66 -2.39 -0.01 1.72 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.04 0.92 5.97 -2.39 -0.01 0.91 16 40 H 0.07 1.84 7.00 -2.39 -0.02 1.82 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.05 2.28 6.99 -2.38 -0.02 2.26 16 43 H 0.08 3.49 5.51 -2.39 -0.01 3.47 16 44 H 0.01 0.61 6.82 -2.39 -0.02 0.60 16 45 H 0.01 0.50 7.87 -2.38 -0.02 0.48 16 46 H -0.02 -1.42 7.06 -2.39 -0.02 -1.44 16 47 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -70.09 349.30 2.78 -67.30 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.93 Total: 11.92 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 5.67 Total: -0.10 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -5.80 Total: -102.68 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.04 Total: -23.90 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -70.09 2.78 -67.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355451721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.987 kcal (2) G-P(sol) polarization free energy of solvation -70.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds