Wall clock time and date at job start Tue Mar 31 2020 06:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46931 * 2 1 4 4 C 1.50703 * 109.47145 * 119.99801 * 2 1 3 5 5 O 1.21272 * 119.99963 * 107.59650 * 4 2 1 6 6 N 1.34774 * 119.99599 * 287.59940 * 4 2 1 7 7 C 1.46935 * 120.62693 * 184.97089 * 6 4 2 8 8 C 1.53627 * 108.53970 * 126.36979 * 7 6 4 9 9 H 1.08999 * 109.66124 * 294.84786 * 8 7 6 10 10 C 1.53004 * 109.42909 * 174.72816 * 8 7 6 11 11 C 1.53035 * 109.24276 * 54.85640 * 8 7 6 12 12 C 1.53037 * 109.54023 * 298.50834 * 11 8 7 13 13 H 1.08992 * 109.49869 * 301.41705 * 12 11 8 14 14 C 1.53001 * 109.49666 * 181.31839 * 12 11 8 15 15 C 1.46923 * 120.63681 * 5.25099 * 6 4 2 16 16 N 1.46900 * 109.46862 * 239.99907 * 2 1 3 17 17 C 1.46897 * 111.00055 * 306.04421 * 16 2 1 18 18 C 1.46895 * 111.00082 * 69.99957 * 16 2 1 19 19 C 1.50703 * 109.47080 * 169.99646 * 18 16 2 20 20 H 1.08004 * 119.99620 * 0.02562 * 19 18 16 21 21 C 1.37871 * 119.99972 * 180.02562 * 19 18 16 22 22 N 1.31515 * 120.00456 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 120.00138 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46839 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47110 * 119.99598 * 23 21 19 26 26 H 1.48494 * 109.47222 * 240.00007 * 23 21 19 27 27 H 1.08998 * 109.47287 * 186.13970 * 1 2 3 28 28 H 1.09001 * 109.47071 * 306.13937 * 1 2 3 29 29 H 1.09003 * 109.47567 * 66.13722 * 1 2 3 30 30 H 1.09000 * 109.58781 * 246.20171 * 7 6 4 31 31 H 1.08994 * 109.58256 * 6.62901 * 7 6 4 32 32 H 1.09001 * 109.46660 * 300.28650 * 10 8 7 33 33 H 1.08994 * 109.47190 * 60.28482 * 10 8 7 34 34 H 1.08997 * 109.47214 * 180.29107 * 10 8 7 35 35 H 1.09004 * 109.45764 * 178.48857 * 11 8 7 36 36 H 1.09008 * 109.44934 * 58.52638 * 11 8 7 37 37 H 1.09006 * 109.47239 * 300.15949 * 14 12 11 38 38 H 1.08996 * 109.47388 * 60.16360 * 14 12 11 39 39 H 1.08999 * 109.47037 * 180.16880 * 14 12 11 40 40 H 1.08999 * 109.58697 * 353.37252 * 15 6 4 41 41 H 1.08999 * 109.58644 * 113.79806 * 15 6 4 42 42 H 1.08999 * 109.47318 * 183.96148 * 17 16 2 43 43 H 1.09000 * 109.47276 * 63.95552 * 17 16 2 44 44 H 1.09004 * 109.46736 * 303.95730 * 17 16 2 45 45 H 1.09001 * 109.47402 * 289.99635 * 18 16 2 46 46 H 1.09000 * 109.46960 * 50.00020 * 18 16 2 47 47 H 0.96997 * 120.00828 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5338 -1.8103 1.1334 6 7 1.9242 -0.1233 2.4388 7 6 2.5058 -0.7534 3.6320 8 6 3.4224 0.2661 4.3252 9 1 4.2670 0.5000 3.6771 10 6 3.9359 -0.3231 5.6406 11 6 2.6298 1.5433 4.6125 12 6 2.1436 2.1513 3.2949 13 1 2.9998 2.3673 2.6561 14 6 1.3795 3.4456 3.5810 15 6 1.2173 1.1560 2.5891 16 7 2.0196 -0.6925 -1.1994 17 6 1.4342 -2.0355 -1.3077 18 6 1.7528 0.0971 -2.4090 19 6 2.4773 -0.5164 -3.5794 20 1 3.0758 -1.4044 -3.4387 21 6 2.3762 0.0559 -4.8296 22 7 1.6472 1.1370 -5.0011 23 14 3.2738 -0.7050 -6.2806 24 1 4.0180 -1.9073 -5.8269 25 1 2.2895 -1.0962 -7.3215 26 1 4.2266 0.2833 -6.8467 27 1 -0.3634 -1.0217 0.1099 28 1 -0.3633 0.6061 0.8299 29 1 -0.3634 0.4157 -0.9398 30 1 1.7085 -1.0537 4.3120 31 1 3.0862 -1.6276 3.3373 32 1 3.0909 -0.5579 6.2878 33 1 4.5003 -1.2327 5.4354 34 1 4.5822 0.4017 6.1355 35 1 3.2696 2.2593 5.1285 36 1 1.7717 1.3044 5.2408 37 1 0.5242 3.2287 4.2210 38 1 2.0389 4.1534 4.0831 39 1 1.0308 3.8766 2.6425 40 1 0.9474 1.5419 1.6061 41 1 0.3172 1.0081 3.1857 42 1 1.8664 -2.5522 -2.1647 43 1 0.3555 -1.9521 -1.4398 44 1 1.6466 -2.5987 -0.3990 45 1 0.6813 0.1052 -2.6087 46 1 2.1024 1.1188 -2.2604 47 1 1.5763 1.5399 -5.8805 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355451723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:32 Heat of formation + Delta-G solvation = -59.856897 kcal Electronic energy + Delta-G solvation = -23714.127279 eV Core-core repulsion = 20509.697574 eV Total energy + Delta-G solvation = -3204.429705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62098 -39.36007 -37.86763 -35.12795 -34.66369 -34.37678 -31.76373 -29.05631 -27.72879 -27.56919 -27.27059 -26.60988 -24.86014 -22.35478 -21.73718 -20.91730 -19.89475 -18.56893 -18.22741 -17.07371 -16.64005 -16.36295 -16.07489 -15.76571 -15.68607 -15.39024 -15.25055 -14.49099 -14.26416 -14.20246 -13.90558 -13.84298 -13.39701 -13.24277 -13.21111 -12.97293 -12.84376 -12.78624 -12.64247 -12.57957 -12.44033 -12.42269 -12.15501 -11.99374 -11.77438 -11.72871 -11.45691 -11.37451 -11.20279 -10.61542 -10.43739 -9.60066 -8.96354 -8.21317 -6.30116 1.39507 1.40129 1.54112 1.59954 1.94466 2.40642 3.11002 3.32854 3.49244 3.72087 3.85410 3.91451 3.96022 4.05109 4.08367 4.30844 4.38565 4.49790 4.58513 4.60029 4.62100 4.66096 4.70326 4.73766 4.79003 4.85302 4.86941 4.91240 5.03309 5.08296 5.09046 5.15137 5.23186 5.23672 5.31039 5.31994 5.34403 5.41210 5.55081 5.62728 5.65217 6.02560 6.30056 6.33624 6.62320 6.84793 7.21940 7.39045 8.89622 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024251 B = 0.003962 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.332544 B = 7065.711196 C = 7471.503010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.062 3.938 3 H 0.099 0.901 4 C 0.526 3.474 5 O -0.564 6.564 6 N -0.610 5.610 7 C 0.115 3.885 8 C -0.104 4.104 9 H 0.052 0.948 10 C -0.139 4.139 11 C -0.102 4.102 12 C -0.108 4.108 13 H 0.056 0.944 14 C -0.141 4.141 15 C 0.101 3.899 16 N -0.537 5.537 17 C 0.038 3.962 18 C 0.212 3.788 19 C -0.527 4.527 20 H 0.054 0.946 21 C 0.007 3.993 22 N -0.929 5.929 23 Si 0.966 3.034 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.275 1.275 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.015 0.985 44 H 0.080 0.920 45 H -0.023 1.023 46 H 0.008 0.992 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.447 3.640 23.222 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.050 4.050 3 H 0.117 0.883 4 C 0.315 3.685 5 O -0.443 6.443 6 N -0.342 5.342 7 C -0.007 4.007 8 C -0.123 4.123 9 H 0.071 0.929 10 C -0.197 4.197 11 C -0.139 4.139 12 C -0.128 4.128 13 H 0.075 0.925 14 C -0.198 4.198 15 C -0.021 4.021 16 N -0.261 5.261 17 C -0.110 4.110 18 C 0.086 3.914 19 C -0.565 4.565 20 H 0.072 0.928 21 C -0.191 4.191 22 N -0.570 5.570 23 Si 0.791 3.209 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.201 1.201 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.034 0.966 44 H 0.098 0.902 45 H -0.005 1.005 46 H 0.026 0.974 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.725 3.116 23.082 23.355 hybrid contribution -0.312 -0.165 -1.408 1.452 sum -2.036 2.952 21.674 21.969 Atomic orbital electron populations 1.22387 0.94034 1.02942 1.03684 1.21665 0.95403 0.98358 0.89565 0.88319 1.20670 0.77686 0.85427 0.84762 1.90552 1.45958 1.21727 1.86014 1.48152 1.55896 1.23574 1.06616 1.21833 0.97223 0.96020 0.85632 1.21551 0.97439 0.95835 0.97488 0.92919 1.21720 1.01604 1.00864 0.95498 1.21628 1.00268 0.95630 0.96375 1.21516 0.98333 0.95589 0.97313 0.92504 1.21734 1.00534 0.95381 1.02179 1.22221 0.95355 0.82043 1.02471 1.61924 1.58669 1.03420 1.02078 1.22343 0.95616 0.90873 1.02140 1.19409 0.93392 0.92205 0.86376 1.21472 1.29563 1.12003 0.93484 0.92810 1.25806 0.96270 0.95443 1.01600 1.70056 1.41174 1.21614 1.24146 0.85388 0.78418 0.78513 0.78628 1.19456 1.20075 1.20080 0.92453 0.88442 0.92505 0.89802 0.91660 0.91178 0.93077 0.91342 0.90521 0.90166 0.91067 0.91630 0.92532 0.89547 0.88902 0.93343 0.96608 0.90185 1.00512 0.97425 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.39 7.96 71.98 0.57 -4.82 16 2 C 0.06 2.33 1.87 44.17 0.08 2.41 16 3 H 0.10 3.58 7.06 -2.38 -0.02 3.56 16 4 C 0.53 18.65 6.87 87.66 0.60 19.25 16 5 O -0.56 -24.21 13.28 -3.01 -0.04 -24.25 16 6 N -0.61 -15.79 2.97 -818.06 -2.43 -18.22 16 7 C 0.11 2.55 5.73 86.51 0.50 3.05 16 8 C -0.10 -1.82 2.89 -10.57 -0.03 -1.85 16 9 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 10 C -0.14 -1.84 9.20 71.98 0.66 -1.18 16 11 C -0.10 -1.37 4.45 30.62 0.14 -1.23 16 12 C -0.11 -1.73 2.87 -10.72 -0.03 -1.77 16 13 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 14 C -0.14 -1.67 9.20 71.98 0.66 -1.01 16 15 C 0.10 1.90 4.66 86.36 0.40 2.30 16 16 N -0.54 -25.55 4.54 -906.04 -4.11 -29.66 16 17 C 0.04 1.74 8.33 127.69 1.06 2.80 16 18 C 0.21 11.58 4.30 85.56 0.37 11.95 16 19 C -0.53 -31.24 8.52 25.60 0.22 -31.03 16 20 H 0.05 3.24 7.10 -2.91 -0.02 3.22 16 21 C 0.01 0.41 5.46 84.65 0.46 0.88 16 22 N -0.93 -55.96 13.29 21.45 0.28 -55.68 16 23 Si 0.97 45.64 29.54 68.60 2.03 47.67 16 24 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 27 H 0.06 1.83 6.79 -2.39 -0.02 1.82 16 28 H 0.10 2.24 5.89 -2.39 -0.01 2.23 16 29 H 0.06 2.01 6.67 -2.39 -0.02 2.00 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.81 7.04 -2.39 -0.02 1.79 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 0.89 8.14 -2.38 -0.02 0.88 16 36 H 0.08 0.86 8.14 -2.38 -0.02 0.85 16 37 H 0.07 0.65 8.14 -2.38 -0.02 0.64 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.09 1.75 4.53 -2.39 -0.01 1.74 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.05 2.35 6.86 -2.39 -0.02 2.33 16 43 H 0.02 0.67 6.60 -2.39 -0.02 0.66 16 44 H 0.08 3.55 5.41 -2.38 -0.01 3.54 16 45 H -0.02 -1.30 6.93 -2.39 -0.02 -1.32 16 46 H 0.01 0.44 7.93 -2.39 -0.02 0.42 16 47 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -71.10 352.04 2.33 -68.77 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.93 Total: 11.62 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.67 Total: -0.25 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -6.25 Total: -103.55 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.04 Total: -24.25 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -71.10 2.33 -68.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355451723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.911 kcal (2) G-P(sol) polarization free energy of solvation -71.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds