Wall clock time and date at job start Tue Mar 31 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 C 1.50705 * 109.47115 * 119.99834 * 2 1 3 5 5 O 1.21273 * 119.99838 * 105.66202 * 4 2 1 6 6 N 1.34780 * 119.99955 * 285.66014 * 4 2 1 7 7 C 1.46492 * 119.99952 * 180.02562 * 6 4 2 8 8 H 1.09005 * 109.47435 * 324.99430 * 7 6 4 9 9 C 1.52996 * 109.47838 * 84.99986 * 7 6 4 10 10 C 1.53002 * 109.47207 * 59.99652 * 9 7 6 11 11 C 1.52997 * 109.46891 * 60.00262 * 10 9 7 12 12 C 1.53002 * 109.47431 * 300.00023 * 11 10 9 13 13 C 1.53000 * 109.46761 * 59.99984 * 12 11 10 14 14 H 1.09003 * 109.47577 * 59.99841 * 13 12 11 15 15 C 1.53002 * 109.47124 * 179.97438 * 13 12 11 16 16 N 1.46897 * 109.47620 * 239.99650 * 2 1 3 17 17 C 1.46902 * 110.99683 * 76.36891 * 16 2 1 18 18 C 1.46897 * 110.99944 * 312.41782 * 16 2 1 19 19 C 1.50700 * 109.47085 * 189.99550 * 18 16 2 20 20 H 1.08001 * 120.00075 * 359.97438 * 19 18 16 21 21 C 1.37878 * 120.00109 * 179.72256 * 19 18 16 22 22 N 1.31519 * 119.99794 * 0.27601 * 21 19 18 23 23 Si 1.86798 * 120.00265 * 180.27292 * 21 19 18 24 24 H 1.48506 * 109.46897 * 60.00071 * 23 21 19 25 25 H 1.48495 * 109.47198 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47408 * 300.00411 * 23 21 19 27 27 H 1.08998 * 109.47178 * 300.00074 * 1 2 3 28 28 H 1.08996 * 109.46722 * 60.00182 * 1 2 3 29 29 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 30 30 H 0.97003 * 119.99768 * 359.97438 * 6 4 2 31 31 H 1.08997 * 109.47652 * 180.02562 * 9 7 6 32 32 H 1.09002 * 109.46792 * 300.00091 * 9 7 6 33 33 H 1.09004 * 109.46806 * 300.00547 * 10 9 7 34 34 H 1.08997 * 109.47224 * 180.02562 * 10 9 7 35 35 H 1.09005 * 109.47350 * 180.02562 * 11 10 9 36 36 H 1.09004 * 109.47162 * 60.00503 * 11 10 9 37 37 H 1.08997 * 109.47306 * 299.99997 * 12 11 10 38 38 H 1.09002 * 109.47242 * 179.97438 * 12 11 10 39 39 H 1.08996 * 109.47140 * 179.97438 * 15 13 12 40 40 H 1.08994 * 109.47452 * 300.00192 * 15 13 12 41 41 H 1.09004 * 109.47079 * 60.00325 * 15 13 12 42 42 H 1.09005 * 109.47112 * 290.42942 * 17 16 2 43 43 H 1.09003 * 109.47348 * 50.42977 * 17 16 2 44 44 H 1.08996 * 109.47251 * 170.43695 * 17 16 2 45 45 H 1.08996 * 109.47212 * 69.99568 * 18 16 2 46 46 H 1.09001 * 109.47135 * 309.99450 * 18 16 2 47 47 H 0.96995 * 119.99869 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5018 -1.8248 1.1381 6 7 1.9599 -0.1072 2.4336 7 6 2.4487 -0.7975 3.6297 8 1 2.2493 -1.8654 3.5399 9 6 3.9552 -0.5701 3.7701 10 6 4.2351 0.9288 3.8962 11 6 3.5190 1.4792 5.1311 12 6 2.0125 1.2518 4.9908 13 6 1.7326 -0.2471 4.8647 14 1 2.0963 -0.7608 5.7546 15 6 0.2261 -0.4747 4.7250 16 7 2.0198 -0.6925 -1.1993 17 6 1.8906 0.1597 -2.3889 18 6 1.3232 -1.9717 -1.3900 19 6 2.0110 -2.7617 -2.4734 20 1 2.8786 -2.3541 -2.9709 21 6 1.5359 -4.0071 -2.8259 22 7 0.4790 -4.5033 -2.2204 23 14 2.3930 -4.9896 -4.1635 24 1 3.8016 -5.2422 -3.7666 25 1 1.6925 -6.2853 -4.3520 26 1 2.3670 -4.2227 -5.4348 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.5848 0.7843 2.5074 31 1 4.3189 -1.0841 4.6598 32 1 4.4654 -0.9622 2.8903 33 1 3.8714 1.4424 3.0062 34 1 5.3084 1.0909 3.9958 35 1 3.7180 2.5472 5.2207 36 1 3.8827 0.9656 6.0211 37 1 1.6488 1.7654 4.1009 38 1 1.5023 1.6435 5.8708 39 1 0.0267 -1.5424 4.6347 40 1 -0.2838 -0.0827 5.6050 41 1 -0.1380 0.0390 3.8352 42 1 0.8360 0.2789 -2.6377 43 1 2.3285 1.1368 -2.1852 44 1 2.4111 -0.3044 -3.2266 45 1 0.2893 -1.7829 -1.6787 46 1 1.3427 -2.5383 -0.4590 47 1 0.1445 -5.3792 -2.4686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355457162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:08 Heat of formation + Delta-G solvation = -49.888445 kcal Electronic energy + Delta-G solvation = -23909.931128 eV Core-core repulsion = 20705.933688 eV Total energy + Delta-G solvation = -3203.997440 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.21447 -38.40637 -36.15000 -33.47082 -32.61837 -32.45256 -30.62305 -29.30535 -27.13170 -26.34645 -25.08082 -23.68010 -22.56008 -21.50467 -21.14279 -19.26377 -18.90738 -16.73942 -16.39075 -15.66543 -15.32755 -14.87869 -14.64143 -14.25637 -14.21937 -13.87411 -13.64791 -13.49526 -13.20805 -12.93734 -12.61079 -12.22188 -12.09004 -11.95106 -11.91061 -11.77003 -11.71727 -11.58159 -11.14527 -10.99792 -10.89488 -10.80729 -10.65176 -10.48438 -10.39632 -10.24511 -10.04272 -9.73238 -9.26119 -8.78638 -8.60346 -8.22860 -7.12449 -5.86733 -3.85321 3.30350 3.42705 3.46216 3.49340 3.51383 4.52939 4.55224 4.59413 4.65766 4.97658 5.07078 5.10578 5.22450 5.30061 5.37614 5.39638 5.48458 5.49480 5.52993 5.55259 5.58882 5.69906 5.74960 5.82772 5.92438 5.97296 5.99795 6.05472 6.08826 6.12058 6.19772 6.22506 6.30280 6.35897 6.39195 6.58231 6.75832 6.87901 7.44829 7.47301 7.88260 7.97138 8.30452 8.34805 8.68860 8.90564 9.20627 9.76157 11.24740 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024081 B = 0.004194 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.469708 B = 6674.826211 C = 6767.659367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 H 0.084 0.916 4 C 0.517 3.483 5 O -0.498 6.498 6 N -0.732 5.732 7 C 0.154 3.846 8 H 0.086 0.914 9 C -0.131 4.131 10 C -0.117 4.117 11 C -0.119 4.119 12 C -0.114 4.114 13 C -0.098 4.098 14 H 0.080 0.920 15 C -0.147 4.147 16 N -0.521 5.521 17 C 0.040 3.960 18 C 0.189 3.811 19 C -0.499 4.499 20 H 0.059 0.941 21 C 0.054 3.946 22 N -0.901 5.901 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.279 1.279 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.391 0.609 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.015 0.985 43 H 0.042 0.958 44 H 0.074 0.926 45 H -0.011 1.011 46 H 0.054 0.946 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.227 14.581 15.464 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.048 4.048 3 H 0.102 0.898 4 C 0.302 3.698 5 O -0.369 6.369 6 N -0.388 5.388 7 C 0.049 3.951 8 H 0.104 0.896 9 C -0.170 4.170 10 C -0.155 4.155 11 C -0.157 4.157 12 C -0.152 4.152 13 C -0.117 4.117 14 H 0.098 0.902 15 C -0.205 4.205 16 N -0.245 5.245 17 C -0.109 4.109 18 C 0.064 3.936 19 C -0.538 4.538 20 H 0.077 0.923 21 C -0.146 4.146 22 N -0.541 5.541 23 Si 0.724 3.276 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.204 1.204 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.226 0.774 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.061 0.939 44 H 0.092 0.908 45 H 0.006 0.994 46 H 0.072 0.928 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.968 13.449 15.432 20.565 hybrid contribution -0.645 0.015 -0.800 1.028 sum 1.324 13.464 14.631 19.928 Atomic orbital electron populations 1.22359 0.96019 1.03806 1.01439 1.21558 0.93783 0.97485 0.91926 0.89802 1.20688 0.78450 0.86716 0.83935 1.90753 1.42271 1.18696 1.85217 1.46118 1.65665 1.20237 1.06779 1.20819 0.92663 0.97766 0.83889 0.89586 1.21919 0.96405 0.96264 1.02402 1.21482 0.99765 0.96178 0.98031 1.21550 0.95210 1.00451 0.98442 1.21594 0.96267 0.95709 1.01624 1.21409 0.96001 0.96353 0.97903 0.90154 1.21817 0.94852 1.02214 1.01581 1.62125 1.57384 1.05189 0.99822 1.22227 0.98813 0.95386 0.94454 1.19937 0.90923 0.84037 0.98674 1.21114 1.12838 1.01400 1.18419 0.92298 1.24939 0.95248 0.97519 0.96911 1.69954 1.23815 1.17999 1.42305 0.86607 0.79792 0.79167 0.82075 1.20264 1.21473 1.20448 0.93035 0.91942 0.90724 0.77429 0.91592 0.91012 0.91830 0.92325 0.92248 0.92094 0.92082 0.91913 0.92383 0.92831 0.92395 0.96604 0.93925 0.90756 0.99361 0.92811 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 8.32 37.16 0.31 -2.60 16 2 C 0.07 1.17 2.70 -68.86 -0.19 0.99 16 3 H 0.08 1.24 7.81 -51.93 -0.41 0.84 16 4 C 0.52 9.54 6.90 -10.98 -0.08 9.46 16 5 O -0.50 -11.92 14.03 5.56 0.08 -11.84 16 6 N -0.73 -9.73 3.54 -53.81 -0.19 -9.92 16 7 C 0.15 1.91 2.23 -67.93 -0.15 1.76 16 8 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 9 C -0.13 -1.57 5.60 -26.73 -0.15 -1.71 16 10 C -0.12 -1.15 5.77 -26.73 -0.15 -1.31 16 11 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 12 C -0.11 -0.89 5.03 -26.73 -0.13 -1.03 16 13 C -0.10 -0.91 2.51 -90.62 -0.23 -1.13 16 14 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 15 C -0.15 -1.39 9.04 37.16 0.34 -1.06 16 16 N -0.52 -11.74 4.44 -237.73 -1.06 -12.80 16 17 C 0.04 0.78 9.04 60.07 0.54 1.32 16 18 C 0.19 5.17 3.21 -4.98 -0.02 5.16 16 19 C -0.50 -14.87 8.59 -34.44 -0.30 -15.17 16 20 H 0.06 1.74 7.10 -52.49 -0.37 1.36 16 21 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 22 N -0.90 -28.09 13.29 55.43 0.74 -27.36 16 23 Si 0.90 22.78 29.54 -169.99 -5.02 17.76 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.99 7.17 -51.93 -0.37 0.62 16 29 H 0.07 1.49 6.53 -51.93 -0.34 1.15 16 30 H 0.39 4.15 6.66 -40.82 -0.27 3.88 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.67 7.60 -51.93 -0.39 0.28 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.47 6.51 -51.93 -0.34 0.13 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 42 H 0.02 0.30 7.21 -51.93 -0.37 -0.07 16 43 H 0.04 0.68 7.87 -51.93 -0.41 0.27 16 44 H 0.07 1.56 7.02 -51.93 -0.36 1.19 16 45 H -0.01 -0.32 6.79 -51.93 -0.35 -0.67 16 46 H 0.05 1.65 5.93 -51.93 -0.31 1.34 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 355.42 15.07 5.36 5.36 Total: -1.00 -34.09 355.42 -9.00 -43.09 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.44 Total: 0.61 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -0.46 Total: -4.90 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.51 Total: -50.08 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.09 -9.00 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355457162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.801 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds