Wall clock time and date at job start Tue Mar 31 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 C 1.50705 * 109.47115 * 119.99834 * 2 1 3 5 5 O 1.21273 * 119.99838 * 105.66202 * 4 2 1 6 6 N 1.34780 * 119.99955 * 285.66014 * 4 2 1 7 7 C 1.46492 * 119.99952 * 180.02562 * 6 4 2 8 8 H 1.09005 * 109.47435 * 324.99430 * 7 6 4 9 9 C 1.52996 * 109.47838 * 84.99986 * 7 6 4 10 10 C 1.53002 * 109.47207 * 59.99652 * 9 7 6 11 11 C 1.52997 * 109.46891 * 60.00262 * 10 9 7 12 12 C 1.53002 * 109.47431 * 300.00023 * 11 10 9 13 13 C 1.53000 * 109.46761 * 59.99984 * 12 11 10 14 14 H 1.09003 * 109.47577 * 59.99841 * 13 12 11 15 15 C 1.53002 * 109.47124 * 179.97438 * 13 12 11 16 16 N 1.46897 * 109.47620 * 239.99650 * 2 1 3 17 17 C 1.46902 * 110.99683 * 76.36891 * 16 2 1 18 18 C 1.46897 * 110.99944 * 312.41782 * 16 2 1 19 19 C 1.50700 * 109.47085 * 189.99550 * 18 16 2 20 20 H 1.08001 * 120.00075 * 359.97438 * 19 18 16 21 21 C 1.37878 * 120.00109 * 179.72256 * 19 18 16 22 22 N 1.31519 * 119.99794 * 0.27601 * 21 19 18 23 23 Si 1.86798 * 120.00265 * 180.27292 * 21 19 18 24 24 H 1.48506 * 109.46897 * 60.00071 * 23 21 19 25 25 H 1.48495 * 109.47198 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47408 * 300.00411 * 23 21 19 27 27 H 1.08998 * 109.47178 * 300.00074 * 1 2 3 28 28 H 1.08996 * 109.46722 * 60.00182 * 1 2 3 29 29 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 30 30 H 0.97003 * 119.99768 * 359.97438 * 6 4 2 31 31 H 1.08997 * 109.47652 * 180.02562 * 9 7 6 32 32 H 1.09002 * 109.46792 * 300.00091 * 9 7 6 33 33 H 1.09004 * 109.46806 * 300.00547 * 10 9 7 34 34 H 1.08997 * 109.47224 * 180.02562 * 10 9 7 35 35 H 1.09005 * 109.47350 * 180.02562 * 11 10 9 36 36 H 1.09004 * 109.47162 * 60.00503 * 11 10 9 37 37 H 1.08997 * 109.47306 * 299.99997 * 12 11 10 38 38 H 1.09002 * 109.47242 * 179.97438 * 12 11 10 39 39 H 1.08996 * 109.47140 * 179.97438 * 15 13 12 40 40 H 1.08994 * 109.47452 * 300.00192 * 15 13 12 41 41 H 1.09004 * 109.47079 * 60.00325 * 15 13 12 42 42 H 1.09005 * 109.47112 * 290.42942 * 17 16 2 43 43 H 1.09003 * 109.47348 * 50.42977 * 17 16 2 44 44 H 1.08996 * 109.47251 * 170.43695 * 17 16 2 45 45 H 1.08996 * 109.47212 * 69.99568 * 18 16 2 46 46 H 1.09001 * 109.47135 * 309.99450 * 18 16 2 47 47 H 0.96995 * 119.99869 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5018 -1.8248 1.1381 6 7 1.9599 -0.1072 2.4336 7 6 2.4487 -0.7975 3.6297 8 1 2.2493 -1.8654 3.5399 9 6 3.9552 -0.5701 3.7701 10 6 4.2351 0.9288 3.8962 11 6 3.5190 1.4792 5.1311 12 6 2.0125 1.2518 4.9908 13 6 1.7326 -0.2471 4.8647 14 1 2.0963 -0.7608 5.7546 15 6 0.2261 -0.4747 4.7250 16 7 2.0198 -0.6925 -1.1993 17 6 1.8906 0.1597 -2.3889 18 6 1.3232 -1.9717 -1.3900 19 6 2.0110 -2.7617 -2.4734 20 1 2.8786 -2.3541 -2.9709 21 6 1.5359 -4.0071 -2.8259 22 7 0.4790 -4.5033 -2.2204 23 14 2.3930 -4.9896 -4.1635 24 1 3.8016 -5.2422 -3.7666 25 1 1.6925 -6.2853 -4.3520 26 1 2.3670 -4.2227 -5.4348 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.5848 0.7843 2.5074 31 1 4.3189 -1.0841 4.6598 32 1 4.4654 -0.9622 2.8903 33 1 3.8714 1.4424 3.0062 34 1 5.3084 1.0909 3.9958 35 1 3.7180 2.5472 5.2207 36 1 3.8827 0.9656 6.0211 37 1 1.6488 1.7654 4.1009 38 1 1.5023 1.6435 5.8708 39 1 0.0267 -1.5424 4.6347 40 1 -0.2838 -0.0827 5.6050 41 1 -0.1380 0.0390 3.8352 42 1 0.8360 0.2789 -2.6377 43 1 2.3285 1.1368 -2.1852 44 1 2.4111 -0.3044 -3.2266 45 1 0.2893 -1.7829 -1.6787 46 1 1.3427 -2.5383 -0.4590 47 1 0.1445 -5.3792 -2.4686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355457162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:07 Heat of formation + Delta-G solvation = -73.466490 kcal Electronic energy + Delta-G solvation = -23910.953549 eV Core-core repulsion = 20705.933688 eV Total energy + Delta-G solvation = -3205.019861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.44596 -39.65977 -37.77841 -34.85639 -34.53090 -33.42794 -31.99425 -30.44653 -29.20030 -27.20824 -26.66616 -25.43651 -23.63065 -22.69793 -22.25844 -20.73350 -19.94284 -18.60041 -18.12776 -16.94473 -16.61913 -16.35558 -15.89706 -15.73700 -15.56462 -15.29934 -14.88114 -14.74071 -14.44335 -14.21394 -13.98466 -13.74622 -13.49555 -13.18898 -13.13957 -12.93951 -12.83092 -12.77577 -12.65634 -12.53503 -12.39746 -12.30478 -12.19510 -11.80987 -11.72674 -11.37024 -11.33243 -11.18635 -10.88950 -10.62238 -10.37615 -9.87723 -8.91181 -8.16329 -6.24309 1.36752 1.42294 1.49329 1.84207 2.24685 2.41795 3.16118 3.44478 3.68091 3.84528 3.86808 3.93657 4.11695 4.17965 4.21333 4.26434 4.50825 4.53939 4.58060 4.60952 4.64681 4.69359 4.73043 4.74506 4.85519 4.88013 4.98436 5.09176 5.10245 5.14341 5.17496 5.21019 5.30750 5.32456 5.36515 5.40481 5.45792 5.49387 5.56543 5.65778 5.74185 6.12851 6.43031 6.57478 6.81448 6.91354 7.43004 7.52666 8.95027 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024081 B = 0.004194 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.469708 B = 6674.826211 C = 6767.659367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.062 3.938 3 H 0.130 0.870 4 C 0.514 3.486 5 O -0.565 6.565 6 N -0.706 5.706 7 C 0.150 3.850 8 H 0.046 0.954 9 C -0.128 4.128 10 C -0.113 4.113 11 C -0.114 4.114 12 C -0.111 4.111 13 C -0.089 4.089 14 H 0.091 0.909 15 C -0.147 4.147 16 N -0.541 5.541 17 C 0.042 3.958 18 C 0.214 3.786 19 C -0.521 4.521 20 H 0.056 0.944 21 C -0.003 4.003 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.275 1.275 25 H -0.281 1.281 26 H -0.262 1.262 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.028 0.972 30 H 0.410 0.590 31 H 0.078 0.922 32 H 0.030 0.970 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.018 0.982 43 H 0.087 0.913 44 H 0.053 0.947 45 H -0.034 1.034 46 H 0.013 0.987 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.468 17.509 16.421 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.050 4.050 3 H 0.147 0.853 4 C 0.300 3.700 5 O -0.441 6.441 6 N -0.361 5.361 7 C 0.046 3.954 8 H 0.064 0.936 9 C -0.167 4.167 10 C -0.151 4.151 11 C -0.151 4.151 12 C -0.148 4.148 13 C -0.107 4.107 14 H 0.109 0.891 15 C -0.205 4.205 16 N -0.265 5.265 17 C -0.106 4.106 18 C 0.088 3.912 19 C -0.560 4.560 20 H 0.075 0.925 21 C -0.200 4.200 22 N -0.578 5.578 23 Si 0.792 3.208 24 H -0.200 1.200 25 H -0.206 1.206 26 H -0.186 1.186 27 H 0.112 0.888 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.248 0.752 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.105 0.895 44 H 0.072 0.928 45 H -0.017 1.017 46 H 0.031 0.969 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.197 16.456 16.421 23.351 hybrid contribution -0.713 -0.851 -1.007 1.499 sum 1.484 15.606 15.413 21.984 Atomic orbital electron populations 1.22246 0.94729 1.01576 1.03975 1.21765 0.94802 0.98816 0.89664 0.85286 1.20953 0.77648 0.85949 0.85471 1.90733 1.45584 1.21569 1.86261 1.45868 1.64042 1.20588 1.05623 1.20904 0.93757 0.95871 0.84912 0.93555 1.21864 0.95369 0.98361 1.01091 1.21464 1.00524 0.93956 0.99126 1.21527 0.94850 1.01430 0.97295 1.21604 0.96464 0.93839 1.02917 1.21371 0.95374 0.97922 0.96071 0.89119 1.21825 0.95137 1.00966 1.02537 1.61892 1.57477 1.04657 1.02511 1.22240 0.99095 0.96528 0.92710 1.19384 0.89862 0.86168 0.95776 1.21512 1.12956 1.02326 1.19194 0.92548 1.25909 0.95917 0.98680 0.99458 1.70101 1.25320 1.18457 1.43900 0.85474 0.78353 0.77691 0.79298 1.20027 1.20643 1.18641 0.88814 0.90996 0.95281 0.75235 0.90370 0.95056 0.92373 0.91848 0.90492 0.91403 0.91561 0.89746 0.94493 0.90515 0.92694 0.96386 0.89478 0.92850 1.01657 0.96918 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.34 8.32 71.98 0.60 -4.74 16 2 C 0.06 2.17 2.70 44.17 0.12 2.29 16 3 H 0.13 3.36 7.81 -2.39 -0.02 3.34 16 4 C 0.51 19.48 6.90 87.66 0.61 20.08 16 5 O -0.56 -29.02 14.03 -3.01 -0.04 -29.07 16 6 N -0.71 -18.46 3.54 -442.54 -1.57 -20.03 16 7 C 0.15 3.80 2.23 44.99 0.10 3.90 16 8 H 0.05 1.55 7.58 -2.38 -0.02 1.53 16 9 C -0.13 -3.09 5.60 30.59 0.17 -2.92 16 10 C -0.11 -2.01 5.77 30.59 0.18 -1.84 16 11 C -0.11 -1.39 5.92 30.59 0.18 -1.21 16 12 C -0.11 -1.30 5.03 30.59 0.15 -1.15 16 13 C -0.09 -1.48 2.51 -10.79 -0.03 -1.50 16 14 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 15 C -0.15 -2.55 9.04 71.98 0.65 -1.90 16 16 N -0.54 -24.78 4.44 -906.04 -4.02 -28.80 16 17 C 0.04 1.61 9.04 127.69 1.15 2.76 16 18 C 0.21 12.34 3.21 85.56 0.27 12.62 16 19 C -0.52 -32.25 8.59 25.60 0.22 -32.03 16 20 H 0.06 3.42 7.10 -2.91 -0.02 3.40 16 21 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 22 N -0.94 -60.68 13.29 21.45 0.28 -60.39 16 23 Si 0.97 47.70 29.54 68.60 2.03 49.72 16 24 H -0.27 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 26 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 27 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.07 2.17 7.17 -2.39 -0.02 2.15 16 29 H 0.03 1.19 6.53 -2.39 -0.02 1.17 16 30 H 0.41 7.66 6.66 -92.71 -0.62 7.04 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.03 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.09 7.60 -2.38 -0.02 1.08 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.07 0.73 6.51 -2.39 -0.02 0.71 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.05 0.97 7.45 -2.38 -0.02 0.95 16 42 H 0.02 0.67 7.21 -2.38 -0.02 0.65 16 43 H 0.09 2.53 7.87 -2.39 -0.02 2.51 16 44 H 0.05 2.23 7.02 -2.39 -0.02 2.22 16 45 H -0.03 -2.06 6.79 -2.39 -0.02 -2.08 16 46 H 0.01 0.84 5.93 -2.39 -0.01 0.83 16 47 H 0.26 15.93 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -80.72 355.42 1.83 -78.89 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.31 Total: 15.01 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 4.84 Total: -5.34 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -5.31 Total: -109.22 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.04 Total: -29.07 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.72 kcal Total: -80.72 1.83 -78.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355457162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.423 kcal (2) G-P(sol) polarization free energy of solvation -80.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds