Wall clock time and date at job start Tue Mar 31 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47456 * 2 1 4 4 C 1.50705 * 109.47455 * 120.00214 * 2 1 3 5 5 O 1.21283 * 119.99519 * 119.99827 * 4 2 1 6 6 N 1.34774 * 119.99951 * 300.00185 * 4 2 1 7 7 C 1.46497 * 119.99771 * 179.97438 * 6 4 2 8 8 H 1.09000 * 109.47184 * 34.99941 * 7 6 4 9 9 C 1.52995 * 109.47391 * 274.99756 * 7 6 4 10 10 C 1.53002 * 109.47234 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46976 * 60.00411 * 10 9 7 12 12 C 1.52995 * 109.46804 * 299.99852 * 11 10 9 13 13 C 1.52998 * 109.46943 * 154.99870 * 7 6 4 14 14 H 1.09000 * 109.47123 * 60.00034 * 13 7 6 15 15 C 1.53002 * 109.47441 * 300.00084 * 13 7 6 16 16 N 1.46906 * 109.47318 * 240.00230 * 2 1 3 17 17 C 1.46906 * 110.99726 * 306.04881 * 16 2 1 18 18 C 1.46902 * 110.99514 * 69.99618 * 16 2 1 19 19 C 1.50706 * 109.46577 * 170.00394 * 18 16 2 20 20 H 1.07995 * 120.00167 * 359.72326 * 19 18 16 21 21 C 1.37879 * 119.99394 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47405 * 60.00219 * 23 21 19 25 25 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 27 27 H 1.09005 * 109.47144 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47269 * 299.99155 * 1 2 3 29 29 H 1.08998 * 109.47459 * 59.99781 * 1 2 3 30 30 H 0.96996 * 120.00113 * 0.02562 * 6 4 2 31 31 H 1.09000 * 109.47108 * 300.00231 * 9 7 6 32 32 H 1.08999 * 109.46954 * 60.00058 * 9 7 6 33 33 H 1.09000 * 109.47314 * 300.00168 * 10 9 7 34 34 H 1.09004 * 109.46751 * 180.02562 * 10 9 7 35 35 H 1.08997 * 109.46962 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47297 * 59.99747 * 11 10 9 37 37 H 1.09000 * 109.47108 * 300.00011 * 12 11 10 38 38 H 1.08999 * 109.47200 * 179.97438 * 12 11 10 39 39 H 1.08998 * 109.46794 * 59.99870 * 15 13 7 40 40 H 1.08999 * 109.47410 * 180.02562 * 15 13 7 41 41 H 1.09000 * 109.46921 * 300.00073 * 15 13 7 42 42 H 1.08997 * 109.46955 * 183.94997 * 17 16 2 43 43 H 1.09001 * 109.46689 * 303.94799 * 17 16 2 44 44 H 1.08992 * 109.47393 * 63.94993 * 17 16 2 45 45 H 1.09000 * 109.47263 * 50.00594 * 18 16 2 46 46 H 1.09001 * 109.47582 * 289.99874 * 18 16 2 47 47 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4546 7 6 2.1947 -0.9411 3.6506 8 1 3.1938 -1.3336 3.4613 9 6 1.2503 -2.0946 3.9942 10 6 1.7603 -2.8167 5.2430 11 6 1.8124 -1.8340 6.4147 12 6 2.7569 -0.6805 6.0711 13 6 2.2464 0.0419 4.8220 14 1 1.2473 0.4344 5.0113 15 6 3.1909 1.1955 4.4785 16 7 2.0197 -0.6925 -1.1995 17 6 1.4342 -2.0355 -1.3079 18 6 1.7528 0.0974 -2.4090 19 6 2.4773 -0.5162 -3.5795 20 1 3.0796 -1.4013 -3.4380 21 6 2.3761 0.0563 -4.8297 22 7 1.6478 1.1380 -5.0007 23 14 3.2735 -0.7046 -6.2806 24 1 2.7963 -2.0959 -6.4835 25 1 3.0049 0.0946 -7.5031 26 1 4.7334 -0.7167 -6.0087 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.1488 0.5383 2.5436 31 1 0.2512 -1.7021 4.1836 32 1 1.2134 -2.7949 3.1597 33 1 2.7593 -3.2092 5.0533 34 1 1.0876 -3.6388 5.4875 35 1 2.1753 -2.3485 7.3045 36 1 0.8134 -1.4415 6.6045 37 1 3.7559 -1.0730 5.8813 38 1 2.7937 0.0198 6.9056 39 1 2.8278 1.7096 3.5885 40 1 3.2281 1.8955 5.3131 41 1 4.1900 0.8030 4.2891 42 1 1.8663 -2.5520 -2.1650 43 1 1.6466 -2.5988 -0.3992 44 1 0.3555 -1.9520 -1.4400 45 1 2.1024 1.1190 -2.2603 46 1 0.6813 0.1054 -2.6088 47 1 1.5770 1.5408 -5.8802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355457163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:10 Heat of formation + Delta-G solvation = -55.475080 kcal Electronic energy + Delta-G solvation = -23366.839219 eV Core-core repulsion = 20162.599524 eV Total energy + Delta-G solvation = -3204.239695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18834 -38.55372 -36.28449 -34.11410 -32.71641 -32.59685 -30.61066 -29.08995 -27.00732 -26.43900 -25.34938 -23.86500 -22.53726 -21.46968 -20.57638 -20.25176 -19.05197 -16.82861 -16.37839 -16.11975 -15.10924 -14.82524 -14.78344 -14.46749 -14.30309 -14.17796 -13.80130 -13.50049 -13.32679 -13.06572 -12.76642 -12.57271 -12.17628 -12.11418 -11.89902 -11.79729 -11.49020 -11.36685 -11.10429 -11.03852 -10.89477 -10.82637 -10.75730 -10.65342 -10.58723 -10.35187 -10.33159 -9.91023 -9.31761 -8.96754 -8.81110 -8.39267 -7.13276 -5.99537 -3.99736 3.07174 3.32353 3.37753 3.40609 3.45442 4.40101 4.46537 4.49518 4.64316 4.86583 4.97349 5.03386 5.10959 5.20030 5.23738 5.27567 5.34638 5.36386 5.49114 5.50098 5.53116 5.58004 5.68339 5.79488 5.81860 5.90916 5.94064 5.95913 5.97828 6.08900 6.10912 6.17420 6.26838 6.35710 6.40911 6.55225 6.69577 6.97511 7.29264 7.37143 7.70454 7.86973 8.11157 8.24972 8.56642 8.66941 9.08310 9.64131 11.11459 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034370 B = 0.003360 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.456583 B = 8331.972212 C = 8504.382751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.063 3.937 3 H 0.099 0.901 4 C 0.522 3.478 5 O -0.518 6.518 6 N -0.734 5.734 7 C 0.152 3.848 8 H 0.086 0.914 9 C -0.129 4.129 10 C -0.117 4.117 11 C -0.121 4.121 12 C -0.111 4.111 13 C -0.097 4.097 14 H 0.073 0.927 15 C -0.148 4.148 16 N -0.517 5.517 17 C 0.033 3.967 18 C 0.194 3.806 19 C -0.505 4.505 20 H 0.064 0.936 21 C 0.055 3.945 22 N -0.901 5.901 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.276 1.276 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.395 0.605 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.010 0.990 45 H 0.028 0.972 46 H -0.005 1.005 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.831 -1.383 23.108 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.050 4.050 3 H 0.116 0.884 4 C 0.308 3.692 5 O -0.392 6.392 6 N -0.387 5.387 7 C 0.048 3.952 8 H 0.104 0.896 9 C -0.168 4.168 10 C -0.155 4.155 11 C -0.158 4.158 12 C -0.149 4.149 13 C -0.116 4.116 14 H 0.091 0.909 15 C -0.205 4.205 16 N -0.240 5.240 17 C -0.115 4.115 18 C 0.069 3.931 19 C -0.544 4.544 20 H 0.082 0.918 21 C -0.146 4.146 22 N -0.541 5.541 23 Si 0.727 3.273 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.201 1.201 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.229 0.771 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.028 0.972 45 H 0.046 0.954 46 H 0.013 0.987 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.836 -2.037 22.881 23.045 hybrid contribution -0.784 0.257 -0.930 1.243 sum -2.620 -1.781 21.951 22.178 Atomic orbital electron populations 1.22398 0.96386 1.02596 1.02498 1.21635 0.93448 0.98906 0.90969 0.88351 1.20872 0.79580 0.84583 0.84132 1.90637 1.36505 1.25779 1.86297 1.46137 1.54821 1.32379 1.05408 1.20904 0.98706 0.91837 0.83798 0.89592 1.21925 0.98998 0.97847 0.98030 1.21497 1.01682 0.97809 0.94522 1.21565 0.99804 0.96497 0.97949 1.21565 0.99417 0.97197 0.96721 1.21403 1.00057 0.95591 0.94588 0.90881 1.21829 0.99659 0.97611 1.01430 1.62063 1.57296 1.02922 1.01744 1.22347 0.95571 0.91416 1.02209 1.19780 0.95029 0.93039 0.85268 1.21145 1.29028 1.12153 0.92024 0.91807 1.24971 0.95658 0.95069 0.98906 1.69944 1.40305 1.20508 1.23347 0.86546 0.80300 0.79084 0.81410 1.20271 1.21412 1.20145 0.92078 0.92869 0.90857 0.77071 0.92051 0.91323 0.91751 0.91938 0.92017 0.92034 0.91646 0.91697 0.92236 0.92698 0.92488 0.91104 0.91946 0.97188 0.95375 0.98749 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.76 8.34 37.15 0.31 -2.45 16 2 C 0.06 1.14 2.73 -68.86 -0.19 0.95 16 3 H 0.10 1.70 7.93 -51.93 -0.41 1.29 16 4 C 0.52 8.73 6.81 -10.98 -0.07 8.65 16 5 O -0.52 -10.63 13.99 5.56 0.08 -10.55 16 6 N -0.73 -8.90 4.28 -53.81 -0.23 -9.13 16 7 C 0.15 1.68 1.90 -67.94 -0.13 1.55 16 8 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 9 C -0.13 -1.35 5.49 -26.73 -0.15 -1.50 16 10 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16 11 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 12 C -0.11 -0.82 5.21 -26.70 -0.14 -0.96 16 13 C -0.10 -0.81 2.30 -90.59 -0.21 -1.02 16 14 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 15 C -0.15 -1.26 9.04 37.16 0.34 -0.92 16 16 N -0.52 -11.75 4.44 -237.72 -1.06 -12.80 16 17 C 0.03 0.71 8.31 60.07 0.50 1.21 16 18 C 0.19 5.08 4.29 -4.97 -0.02 5.06 16 19 C -0.50 -14.56 8.51 -34.44 -0.29 -14.85 16 20 H 0.06 1.85 7.11 -52.49 -0.37 1.48 16 21 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 23 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H 0.06 0.96 6.42 -51.93 -0.33 0.63 16 28 H 0.05 0.62 7.56 -51.93 -0.39 0.23 16 29 H 0.07 1.25 6.91 -51.93 -0.36 0.89 16 30 H 0.40 3.84 7.81 -40.82 -0.32 3.52 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.53 7.45 -51.93 -0.39 0.15 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 1.63 6.86 -51.93 -0.36 1.28 16 43 H 0.06 1.30 5.82 -51.93 -0.30 1.00 16 44 H 0.01 0.20 6.46 -51.93 -0.34 -0.13 16 45 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 46 H -0.01 -0.14 7.06 -51.93 -0.37 -0.51 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -32.10 357.86 -9.10 -41.20 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.53 Total: -0.05 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.47 Total: -5.00 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.55 Total: -48.09 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.10 -9.10 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355457163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.276 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds