Wall clock time and date at job start Tue Mar 31 2020 06:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 110.87827 * 2 1 4 4 C 1.54899 * 111.02700 * 123.87207 * 2 1 3 5 5 N 1.47845 * 104.80010 * 155.17768 * 4 2 1 6 6 C 1.46909 * 110.99976 * 213.63773 * 5 4 2 7 7 C 1.52996 * 109.46620 * 292.75188 * 6 5 4 8 8 C 1.50709 * 109.46851 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99606 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00094 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00264 * 359.97438 * 10 8 7 12 12 C 1.46503 * 120.00379 * 179.97438 * 10 8 7 13 13 C 1.50698 * 109.46933 * 89.99775 * 12 10 8 14 14 H 1.08002 * 120.00060 * 0.02562 * 13 12 10 15 15 C 1.37877 * 119.99698 * 180.02562 * 13 12 10 16 16 N 1.31509 * 120.00318 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99919 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47086 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47432 * 119.99480 * 17 15 13 20 20 H 1.48498 * 109.46860 * 240.00033 * 17 15 13 21 21 C 1.47441 * 108.56405 * 335.89971 * 5 4 2 22 22 C 1.53002 * 109.89143 * 241.58238 * 21 5 4 23 23 C 1.53007 * 109.88781 * 120.39776 * 21 5 4 24 24 C 1.54312 * 107.23587 * 0.99286 * 21 5 4 25 25 H 1.08994 * 109.46707 * 183.84300 * 1 2 3 26 26 H 1.08996 * 109.46736 * 303.84442 * 1 2 3 27 27 H 1.08996 * 109.47005 * 63.84474 * 1 2 3 28 28 H 1.09005 * 110.37380 * 274.00665 * 4 2 1 29 29 H 1.09001 * 110.37489 * 36.23198 * 4 2 1 30 30 H 1.08994 * 109.46932 * 52.74771 * 6 5 4 31 31 H 1.08998 * 109.46761 * 172.75069 * 6 5 4 32 32 H 1.08995 * 109.47542 * 299.99790 * 7 6 5 33 33 H 1.08998 * 109.47651 * 60.00426 * 7 6 5 34 34 H 1.08998 * 109.47041 * 89.99900 * 11 10 8 35 35 H 1.08992 * 109.47540 * 210.00113 * 11 10 8 36 36 H 1.09001 * 109.47012 * 329.99952 * 11 10 8 37 37 H 1.08999 * 109.47367 * 210.00341 * 12 10 8 38 38 H 1.09007 * 109.46511 * 329.99911 * 12 10 8 39 39 H 0.96997 * 120.00386 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.47085 * 174.27650 * 22 21 5 41 41 H 1.08992 * 109.47324 * 294.28060 * 22 21 5 42 42 H 1.09006 * 109.46617 * 54.28103 * 22 21 5 43 43 H 1.08999 * 109.46688 * 300.78026 * 23 21 5 44 44 H 1.09005 * 109.47005 * 60.77337 * 23 21 5 45 45 H 1.08994 * 109.47197 * 180.77518 * 23 21 5 46 46 H 1.09003 * 110.71043 * 263.89929 * 24 21 5 47 47 H 1.09001 * 110.70777 * 140.66241 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0858 -0.8058 1.2005 5 7 3.4323 -1.2411 0.7722 6 6 3.7630 -2.5580 1.3331 7 6 3.9120 -2.4427 2.8514 8 6 4.2519 -3.7935 3.4268 9 8 4.3635 -4.7538 2.6945 10 7 4.4319 -3.9342 4.7550 11 6 4.2976 -2.7741 5.6395 12 6 4.7618 -5.2474 5.3145 13 6 6.2588 -5.4172 5.3485 14 1 6.9003 -4.6259 4.9897 15 6 6.8094 -6.5828 5.8377 16 7 6.0283 -7.5461 6.2751 17 14 8.6651 -6.7930 5.8805 18 1 9.3141 -5.5733 5.3362 19 1 9.1070 -7.0058 7.2821 20 1 9.0493 -7.9672 5.0566 21 6 3.4696 -1.2700 -0.7014 22 6 3.7496 -2.6936 -1.1872 23 6 4.5538 -0.3195 -1.2134 24 6 2.0858 -0.8067 -1.2031 25 1 -0.3632 -1.0253 0.0689 26 1 -0.3633 0.5723 0.8535 27 1 -0.3633 0.4530 -0.9224 28 1 2.1553 -0.1712 2.0840 29 1 1.4526 -1.6695 1.4035 30 1 2.9658 -3.2633 1.0988 31 1 4.6995 -2.9117 0.9019 32 1 4.7092 -1.7373 3.0858 33 1 2.9755 -2.0890 3.2827 34 1 3.2633 -2.6892 5.9730 35 1 4.9490 -2.8992 6.5043 36 1 4.5805 -1.8706 5.0992 37 1 4.3646 -5.3213 6.3269 38 1 4.3215 -6.0278 4.6936 39 1 6.4156 -8.3659 6.6196 40 1 3.6752 -2.7278 -2.2742 41 1 4.7528 -2.9909 -0.8821 42 1 3.0199 -3.3762 -0.7515 43 1 4.3427 0.6924 -0.8674 44 1 5.5249 -0.6379 -0.8340 45 1 4.5663 -0.3358 -2.3031 46 1 1.4479 -1.6635 -1.4203 47 1 2.1879 -0.1686 -2.0808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356985405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:05 Heat of formation + Delta-G solvation = -41.052460 kcal Electronic energy + Delta-G solvation = -23196.864690 eV Core-core repulsion = 19993.250407 eV Total energy + Delta-G solvation = -3203.614283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.19270 -38.76446 -34.83865 -34.13412 -33.22222 -32.53468 -29.85928 -28.03646 -27.36913 -26.83671 -25.70294 -25.03334 -23.29972 -21.62983 -20.54455 -18.76769 -18.24320 -16.53139 -16.37748 -16.06166 -15.47760 -15.14983 -14.98812 -14.50465 -14.16062 -13.88292 -13.81637 -13.32113 -13.02121 -12.85132 -12.54411 -12.49141 -12.17551 -12.14425 -12.02359 -11.79789 -11.66099 -11.61794 -11.29452 -11.26501 -11.02751 -10.86457 -10.84734 -10.72613 -10.57858 -10.52981 -10.39892 -10.13315 -9.57839 -8.83581 -8.41831 -8.28914 -7.59344 -6.02171 -4.06719 3.31233 3.38386 3.42229 3.51506 3.71129 4.17143 4.39437 4.44635 4.49124 4.68929 4.97374 5.09766 5.16104 5.22236 5.28266 5.31537 5.33364 5.40008 5.48356 5.49413 5.51111 5.62113 5.67967 5.69193 5.77045 5.79146 5.83982 5.85056 5.90433 5.93820 5.98483 6.06986 6.14465 6.19311 6.26303 6.30515 6.35673 7.04039 7.11029 7.13044 7.47425 7.58783 7.94737 8.26497 8.47401 8.93594 9.15215 9.58493 11.05937 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026301 B = 0.003549 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.347262 B = 7887.740683 C = 8383.131286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.082 0.918 4 C 0.044 3.956 5 N -0.523 5.523 6 C 0.067 3.933 7 C -0.135 4.135 8 C 0.504 3.496 9 O -0.546 6.546 10 N -0.604 5.604 11 C 0.084 3.916 12 C 0.244 3.756 13 C -0.524 4.524 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.896 5.896 17 Si 0.898 3.102 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.095 3.905 22 C -0.166 4.166 23 C -0.126 4.126 24 C -0.128 4.128 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.031 0.969 38 H 0.043 0.957 39 H 0.262 0.738 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.068 0.932 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.465 17.228 -11.917 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.100 0.900 4 C -0.083 4.083 5 N -0.247 5.247 6 C -0.061 4.061 7 C -0.175 4.175 8 C 0.290 3.710 9 O -0.424 6.424 10 N -0.336 5.336 11 C -0.060 4.060 12 C 0.125 3.875 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.535 5.535 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C 0.006 3.994 22 C -0.224 4.224 23 C -0.184 4.184 24 C -0.167 4.167 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.014 16.861 -12.005 22.576 hybrid contribution 0.472 -0.755 0.010 0.890 sum -8.542 16.106 -11.995 21.823 Atomic orbital electron populations 1.21718 0.94583 1.01936 1.01718 1.22276 0.95397 0.99595 0.94851 0.90004 1.23151 0.88919 0.98403 0.97875 1.63573 1.26701 1.27492 1.06924 1.22080 1.02073 0.88636 0.93332 1.21634 1.03148 0.96550 0.96185 1.20338 0.77880 0.90107 0.82628 1.90656 1.51835 1.41392 1.58558 1.48157 1.68006 1.11505 1.05921 1.21627 1.00462 0.88492 0.95423 1.19277 0.95935 0.78409 0.93867 1.21488 0.91783 1.01711 1.41338 0.92409 1.24946 0.98399 0.95585 0.95273 1.69942 1.34836 1.06389 1.42319 0.86442 0.85265 0.78205 0.77519 1.19779 1.20972 1.20882 1.21707 0.95073 0.95236 0.87402 1.22399 1.02915 0.96023 1.01042 1.21739 0.98308 0.99024 0.99304 1.22958 0.95813 0.99790 0.98119 0.92641 0.92443 0.92572 0.90370 0.93430 0.93764 0.89551 0.88872 0.90080 0.93907 0.90882 0.92303 0.95106 0.93920 0.92807 0.92441 0.91414 0.92020 0.92446 0.92308 0.92875 0.91355 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.31 37.16 0.35 -0.71 16 2 C -0.10 -0.89 3.63 -88.48 -0.32 -1.21 16 3 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 4 C 0.04 0.47 5.15 -2.30 -0.01 0.45 16 5 N -0.52 -6.37 4.80 -215.75 -1.04 -7.41 16 6 C 0.07 0.99 2.96 -3.82 -0.01 0.97 16 7 C -0.13 -2.07 4.27 -27.88 -0.12 -2.19 16 8 C 0.50 10.69 7.67 -10.98 -0.08 10.61 16 9 O -0.55 -13.92 15.56 5.55 0.09 -13.83 16 10 N -0.60 -13.14 2.86 -182.95 -0.52 -13.66 16 11 C 0.08 1.37 10.24 59.85 0.61 1.98 16 12 C 0.24 6.55 5.16 -5.19 -0.03 6.52 16 13 C -0.52 -15.18 9.39 -34.44 -0.32 -15.50 16 14 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 17 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 C 0.10 1.02 1.15 -130.61 -0.15 0.87 16 22 C -0.17 -1.90 7.14 37.16 0.27 -1.63 16 23 C -0.13 -1.24 8.71 37.16 0.32 -0.92 16 24 C -0.13 -1.17 5.48 -24.91 -0.14 -1.30 16 25 H 0.05 0.43 8.08 -51.93 -0.42 0.02 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.54 7.51 -51.93 -0.39 0.15 16 30 H 0.04 0.70 6.61 -51.93 -0.34 0.36 16 31 H 0.09 1.41 6.28 -51.93 -0.33 1.09 16 32 H 0.09 1.35 7.40 -51.93 -0.38 0.97 16 33 H 0.08 1.09 7.39 -51.93 -0.38 0.70 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 36 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 37 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 38 H 0.04 1.29 7.42 -51.92 -0.39 0.90 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.85 6.73 -51.93 -0.35 0.50 16 42 H 0.06 0.77 6.59 -51.93 -0.34 0.43 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.64 7.75 -51.93 -0.40 0.23 16 47 H 0.07 0.58 7.83 -51.93 -0.41 0.17 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -32.74 364.65 -8.65 -41.40 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -8.65 Total: -2.45 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 0.27 Total: -0.42 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.82 Total: -47.34 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.74 -8.65 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356985405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.344 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds