Wall clock time and date at job start Tue Mar 31 2020 06:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 110.87827 * 2 1 4 4 C 1.54899 * 111.02700 * 123.87207 * 2 1 3 5 5 N 1.47845 * 104.80010 * 155.17768 * 4 2 1 6 6 C 1.46909 * 110.99976 * 213.63773 * 5 4 2 7 7 C 1.52996 * 109.46620 * 292.75188 * 6 5 4 8 8 C 1.50709 * 109.46851 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99606 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00094 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00264 * 359.97438 * 10 8 7 12 12 C 1.46503 * 120.00379 * 179.97438 * 10 8 7 13 13 C 1.50698 * 109.46933 * 89.99775 * 12 10 8 14 14 H 1.08002 * 120.00060 * 0.02562 * 13 12 10 15 15 C 1.37877 * 119.99698 * 180.02562 * 13 12 10 16 16 N 1.31509 * 120.00318 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99919 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47086 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47432 * 119.99480 * 17 15 13 20 20 H 1.48498 * 109.46860 * 240.00033 * 17 15 13 21 21 C 1.47441 * 108.56405 * 335.89971 * 5 4 2 22 22 C 1.53002 * 109.89143 * 241.58238 * 21 5 4 23 23 C 1.53007 * 109.88781 * 120.39776 * 21 5 4 24 24 C 1.54312 * 107.23587 * 0.99286 * 21 5 4 25 25 H 1.08994 * 109.46707 * 183.84300 * 1 2 3 26 26 H 1.08996 * 109.46736 * 303.84442 * 1 2 3 27 27 H 1.08996 * 109.47005 * 63.84474 * 1 2 3 28 28 H 1.09005 * 110.37380 * 274.00665 * 4 2 1 29 29 H 1.09001 * 110.37489 * 36.23198 * 4 2 1 30 30 H 1.08994 * 109.46932 * 52.74771 * 6 5 4 31 31 H 1.08998 * 109.46761 * 172.75069 * 6 5 4 32 32 H 1.08995 * 109.47542 * 299.99790 * 7 6 5 33 33 H 1.08998 * 109.47651 * 60.00426 * 7 6 5 34 34 H 1.08998 * 109.47041 * 89.99900 * 11 10 8 35 35 H 1.08992 * 109.47540 * 210.00113 * 11 10 8 36 36 H 1.09001 * 109.47012 * 329.99952 * 11 10 8 37 37 H 1.08999 * 109.47367 * 210.00341 * 12 10 8 38 38 H 1.09007 * 109.46511 * 329.99911 * 12 10 8 39 39 H 0.96997 * 120.00386 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.47085 * 174.27650 * 22 21 5 41 41 H 1.08992 * 109.47324 * 294.28060 * 22 21 5 42 42 H 1.09006 * 109.46617 * 54.28103 * 22 21 5 43 43 H 1.08999 * 109.46688 * 300.78026 * 23 21 5 44 44 H 1.09005 * 109.47005 * 60.77337 * 23 21 5 45 45 H 1.08994 * 109.47197 * 180.77518 * 23 21 5 46 46 H 1.09003 * 110.71043 * 263.89929 * 24 21 5 47 47 H 1.09001 * 110.70777 * 140.66241 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0858 -0.8058 1.2005 5 7 3.4323 -1.2411 0.7722 6 6 3.7630 -2.5580 1.3331 7 6 3.9120 -2.4427 2.8514 8 6 4.2519 -3.7935 3.4268 9 8 4.3635 -4.7538 2.6945 10 7 4.4319 -3.9342 4.7550 11 6 4.2976 -2.7741 5.6395 12 6 4.7618 -5.2474 5.3145 13 6 6.2588 -5.4172 5.3485 14 1 6.9003 -4.6259 4.9897 15 6 6.8094 -6.5828 5.8377 16 7 6.0283 -7.5461 6.2751 17 14 8.6651 -6.7930 5.8805 18 1 9.3141 -5.5733 5.3362 19 1 9.1070 -7.0058 7.2821 20 1 9.0493 -7.9672 5.0566 21 6 3.4696 -1.2700 -0.7014 22 6 3.7496 -2.6936 -1.1872 23 6 4.5538 -0.3195 -1.2134 24 6 2.0858 -0.8067 -1.2031 25 1 -0.3632 -1.0253 0.0689 26 1 -0.3633 0.5723 0.8535 27 1 -0.3633 0.4530 -0.9224 28 1 2.1553 -0.1712 2.0840 29 1 1.4526 -1.6695 1.4035 30 1 2.9658 -3.2633 1.0988 31 1 4.6995 -2.9117 0.9019 32 1 4.7092 -1.7373 3.0858 33 1 2.9755 -2.0890 3.2827 34 1 3.2633 -2.6892 5.9730 35 1 4.9490 -2.8992 6.5043 36 1 4.5805 -1.8706 5.0992 37 1 4.3646 -5.3213 6.3269 38 1 4.3215 -6.0278 4.6936 39 1 6.4156 -8.3659 6.6196 40 1 3.6752 -2.7278 -2.2742 41 1 4.7528 -2.9909 -0.8821 42 1 3.0199 -3.3762 -0.7515 43 1 4.3427 0.6924 -0.8674 44 1 5.5249 -0.6379 -0.8340 45 1 4.5663 -0.3358 -2.3031 46 1 1.4479 -1.6635 -1.4203 47 1 2.1879 -0.1686 -2.0808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356985405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:04 Heat of formation + Delta-G solvation = -62.209984 kcal Electronic energy + Delta-G solvation = -23197.782149 eV Core-core repulsion = 19993.250407 eV Total energy + Delta-G solvation = -3204.531742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.21091 -40.34108 -36.63437 -35.12804 -34.72083 -34.09923 -31.14970 -29.58200 -28.52917 -27.60432 -27.24641 -26.04922 -25.02276 -23.02890 -21.32105 -19.87178 -19.68528 -18.71538 -17.82328 -17.24516 -16.81146 -16.75157 -16.11993 -16.06426 -15.57793 -14.98238 -14.73895 -14.39333 -14.27104 -14.01085 -13.83089 -13.64868 -13.52765 -13.45867 -13.22766 -13.10691 -12.88476 -12.79466 -12.63828 -12.61645 -12.50826 -12.22428 -12.21783 -12.02690 -11.75915 -11.68738 -11.52736 -11.44089 -11.21543 -10.66544 -10.60439 -9.42590 -9.26925 -8.23962 -6.39115 1.35205 1.37692 1.49813 1.83506 2.28533 2.41840 2.98720 3.05420 3.60923 3.64258 3.87227 3.88486 4.07287 4.15698 4.21757 4.31455 4.41143 4.43497 4.58849 4.60683 4.67150 4.69937 4.71227 4.80783 4.83231 4.90639 4.92346 4.95505 4.99220 5.01857 5.04303 5.08559 5.10664 5.20343 5.21683 5.25632 5.33547 5.45163 5.54499 5.55300 5.83391 6.04863 6.10865 6.14511 6.68445 6.78625 7.26801 7.47873 8.83339 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026301 B = 0.003549 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.347262 B = 7887.740683 C = 8383.131286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 H 0.091 0.909 4 C 0.038 3.962 5 N -0.523 5.523 6 C 0.078 3.922 7 C -0.115 4.115 8 C 0.494 3.506 9 O -0.601 6.601 10 N -0.611 5.611 11 C 0.079 3.921 12 C 0.258 3.742 13 C -0.543 4.543 14 H 0.053 0.947 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.969 3.031 18 H -0.267 1.267 19 H -0.267 1.267 20 H -0.281 1.281 21 C 0.089 3.911 22 C -0.163 4.163 23 C -0.121 4.121 24 C -0.125 4.125 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.038 0.962 30 H 0.025 0.975 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.023 0.977 38 H -0.004 1.004 39 H 0.267 0.733 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.043 0.957 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.384 20.084 -12.261 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 H 0.109 0.891 4 C -0.089 4.089 5 N -0.247 5.247 6 C -0.050 4.050 7 C -0.155 4.155 8 C 0.283 3.717 9 O -0.483 6.483 10 N -0.343 5.343 11 C -0.063 4.063 12 C 0.137 3.863 13 C -0.582 4.582 14 H 0.071 0.929 15 C -0.193 4.193 16 N -0.569 5.569 17 Si 0.794 3.206 18 H -0.191 1.191 19 H -0.192 1.192 20 H -0.207 1.207 21 C 0.000 4.000 22 C -0.221 4.221 23 C -0.179 4.179 24 C -0.163 4.163 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.041 0.959 38 H 0.014 0.986 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.951 19.772 -12.331 24.962 hybrid contribution 0.391 -1.653 0.105 1.702 sum -8.560 18.119 -12.226 23.474 Atomic orbital electron populations 1.21694 0.93516 1.01720 1.02706 1.22262 0.96199 0.99489 0.93429 0.89091 1.23276 0.87895 0.98475 0.99289 1.63614 1.27945 1.25200 1.07909 1.21828 1.00394 0.89789 0.93034 1.21540 1.04991 0.92765 0.96186 1.21386 0.76551 0.91753 0.82023 1.90625 1.54093 1.43765 1.59806 1.48206 1.67718 1.11269 1.07072 1.21932 1.02238 0.87424 0.94729 1.18752 0.94789 0.80262 0.92522 1.21742 0.92760 1.02017 1.41642 0.92909 1.25890 1.03671 0.95115 0.94605 1.70056 1.37114 1.06939 1.42775 0.85340 0.78905 0.78142 0.78255 1.19119 1.19237 1.20715 1.21855 0.96693 0.94845 0.86629 1.22358 1.01198 0.96458 1.02064 1.21707 0.97027 0.98875 1.00312 1.22943 0.94385 0.99989 0.98990 0.93452 0.91651 0.91441 0.89212 0.94395 0.95673 0.91837 0.86961 0.87136 0.91107 0.91593 0.88784 0.95860 0.98592 0.92366 0.90715 0.93276 0.93773 0.91721 0.93766 0.91239 0.91851 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.31 71.98 0.67 -1.03 16 2 C -0.09 -1.40 3.63 -9.41 -0.03 -1.43 16 3 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 4 C 0.04 0.72 5.15 86.77 0.45 1.17 16 5 N -0.52 -12.04 4.80 -836.51 -4.02 -16.06 16 6 C 0.08 2.33 2.96 86.30 0.26 2.58 16 7 C -0.11 -3.39 4.27 29.85 0.13 -3.26 16 8 C 0.49 21.30 7.67 87.66 0.67 21.98 16 9 O -0.60 -32.26 15.56 -3.04 -0.05 -32.31 16 10 N -0.61 -26.84 2.86 -851.12 -2.43 -29.27 16 11 C 0.08 2.41 10.24 127.77 1.31 3.72 16 12 C 0.26 14.40 5.16 85.63 0.44 14.84 16 13 C -0.54 -32.20 9.39 25.60 0.24 -31.96 16 14 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 15 C 0.01 0.35 5.46 84.66 0.46 0.81 16 16 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 17 Si 0.97 45.78 29.54 68.60 2.03 47.81 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 C 0.09 1.80 1.15 3.87 0.00 1.81 16 22 C -0.16 -3.78 7.14 71.98 0.51 -3.26 16 23 C -0.12 -2.17 8.71 71.98 0.63 -1.54 16 24 C -0.12 -1.99 5.48 31.78 0.17 -1.82 16 25 H 0.05 0.66 8.08 -2.39 -0.02 0.64 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.04 0.80 7.51 -2.39 -0.02 0.78 16 30 H 0.03 0.83 6.61 -2.39 -0.02 0.82 16 31 H 0.06 2.17 6.28 -2.39 -0.01 2.16 16 32 H 0.11 2.95 7.40 -2.39 -0.02 2.94 16 33 H 0.11 2.65 7.39 -2.39 -0.02 2.63 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 36 H 0.09 2.21 6.44 -2.39 -0.02 2.19 16 37 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 38 H 0.00 -0.26 7.42 -2.38 -0.02 -0.28 16 39 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.05 1.30 6.73 -2.39 -0.02 1.28 16 42 H 0.04 1.16 6.59 -2.38 -0.02 1.14 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.08 7.75 -2.39 -0.02 1.07 16 47 H 0.09 1.15 7.83 -2.39 -0.02 1.13 16 Total: -1.00 -74.28 364.65 2.63 -71.64 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.91 Total: 12.57 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 5.91 Total: 2.61 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -6.17 Total: -102.31 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.05 Total: -32.31 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -74.28 2.63 -71.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356985405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.434 kcal (2) G-P(sol) polarization free energy of solvation -74.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds