Wall clock time and date at job start Tue Mar 31 2020 06:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.90420 * 2 1 4 4 C 1.54912 * 110.98840 * 236.13425 * 2 1 3 5 5 N 1.47844 * 104.79423 * 204.83955 * 4 2 1 6 6 C 1.46898 * 111.00065 * 146.36520 * 5 4 2 7 7 C 1.52995 * 109.47089 * 66.64183 * 6 5 4 8 8 C 1.50703 * 109.47037 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00046 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00040 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99923 * 359.97438 * 10 8 7 12 12 C 1.46504 * 120.00389 * 179.97438 * 10 8 7 13 13 C 1.50704 * 109.46761 * 89.99652 * 12 10 8 14 14 H 1.07999 * 120.00089 * 0.02562 * 13 12 10 15 15 C 1.37877 * 119.99778 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00102 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00142 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46993 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47257 * 119.99881 * 17 15 13 20 20 H 1.48500 * 109.47101 * 240.00067 * 17 15 13 21 21 C 1.47440 * 108.56757 * 24.09379 * 5 4 2 22 22 C 1.53001 * 109.88603 * 118.41599 * 21 5 4 23 23 C 1.53000 * 109.89455 * 239.60330 * 21 5 4 24 24 C 1.54317 * 107.23480 * 359.01518 * 21 5 4 25 25 H 1.08999 * 109.47439 * 182.41101 * 1 2 3 26 26 H 1.08998 * 109.47417 * 302.41146 * 1 2 3 27 27 H 1.09000 * 109.46986 * 62.41272 * 1 2 3 28 28 H 1.08996 * 110.37313 * 86.00906 * 4 2 1 29 29 H 1.09001 * 110.47051 * 323.71740 * 4 2 1 30 30 H 1.09001 * 109.46784 * 306.63865 * 6 5 4 31 31 H 1.09006 * 109.47410 * 186.63998 * 6 5 4 32 32 H 1.09006 * 109.47021 * 299.99396 * 7 6 5 33 33 H 1.08997 * 109.47806 * 59.99710 * 7 6 5 34 34 H 1.08997 * 109.46992 * 90.00852 * 11 10 8 35 35 H 1.09006 * 109.46976 * 209.99901 * 11 10 8 36 36 H 1.08991 * 109.47197 * 330.00057 * 11 10 8 37 37 H 1.08988 * 109.47553 * 209.99673 * 12 10 8 38 38 H 1.09001 * 109.46615 * 330.00036 * 12 10 8 39 39 H 0.96999 * 120.00095 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.46945 * 64.72524 * 22 21 5 41 41 H 1.09008 * 109.47190 * 184.72385 * 22 21 5 42 42 H 1.08995 * 109.47474 * 304.72235 * 22 21 5 43 43 H 1.09004 * 109.46833 * 60.00056 * 23 21 5 44 44 H 1.08995 * 109.47402 * 180.02562 * 23 21 5 45 45 H 1.09003 * 109.47123 * 300.00405 * 23 21 5 46 46 H 1.09004 * 110.70289 * 219.33461 * 24 21 5 47 47 H 1.08993 * 110.71142 * 96.09737 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9189 1.0182 0.0000 4 6 2.0849 -0.8060 -1.2010 5 7 3.4312 -1.2421 -0.7732 6 6 3.7611 -2.5589 -1.3345 7 6 3.8948 -2.4465 -2.8544 8 6 4.2326 -3.7976 -3.4303 9 8 4.3548 -4.7559 -2.6970 10 7 4.3998 -3.9407 -4.7599 11 6 4.2527 -2.7830 -5.6455 12 6 4.7288 -5.2540 -5.3197 13 6 3.4571 -5.9899 -5.6549 14 1 2.4997 -5.5257 -5.4699 15 6 3.5159 -7.2560 -6.1978 16 7 4.6817 -7.8211 -6.4236 17 14 1.9397 -8.1679 -6.6141 18 1 0.7709 -7.3200 -6.2673 19 1 1.9148 -8.4760 -8.0665 20 1 1.8802 -9.4330 -5.8386 21 6 3.4692 -1.2712 0.7004 22 6 3.7484 -2.6950 1.1858 23 6 4.5540 -0.3214 1.2121 24 6 2.0857 -0.8073 1.2027 25 1 -0.3634 -1.0267 0.0432 26 1 -0.3634 0.5508 0.8675 27 1 -0.3633 0.4759 -0.9108 28 1 2.1544 -0.1712 -2.0843 29 1 1.4528 -1.6704 -1.4046 30 1 2.9686 -3.2666 -1.0907 31 1 4.7031 -2.9085 -0.9118 32 1 2.9528 -2.0971 -3.2772 33 1 4.6871 -1.7388 -3.0982 34 1 5.2175 -2.2894 -5.7615 35 1 3.8947 -3.1144 -6.6203 36 1 3.5365 -2.0840 -5.2138 37 1 5.3230 -5.1250 -6.2241 38 1 5.2988 -5.8279 -4.5891 39 1 4.7231 -8.7120 -6.8052 40 1 4.7447 -2.9994 0.8650 41 1 3.6920 -2.7255 2.2740 42 1 3.0076 -3.3744 0.7645 43 1 4.3359 0.6930 0.8780 44 1 4.5764 -0.3486 2.3015 45 1 5.5229 -0.6322 0.8213 46 1 2.1885 -0.1692 2.0805 47 1 1.4475 -1.6636 1.4199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356985407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:07 Heat of formation + Delta-G solvation = -41.214140 kcal Electronic energy + Delta-G solvation = -23233.137136 eV Core-core repulsion = 20029.515842 eV Total energy + Delta-G solvation = -3203.621294 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.18742 -38.76324 -34.83834 -34.12303 -33.22369 -32.54057 -29.85085 -28.03556 -27.37411 -26.82895 -25.70081 -25.03196 -23.29846 -21.62917 -20.53092 -18.75932 -18.24346 -16.52805 -16.38888 -16.05265 -15.46452 -15.19029 -14.94128 -14.51149 -14.24446 -13.88644 -13.70149 -13.30907 -13.04683 -12.85737 -12.52756 -12.47887 -12.17543 -12.15247 -12.02317 -11.80382 -11.63330 -11.62786 -11.31733 -11.25030 -11.04631 -10.87694 -10.82906 -10.71692 -10.58961 -10.52234 -10.38693 -10.14398 -9.58773 -8.83721 -8.42563 -8.28617 -7.59378 -6.02929 -4.07555 3.29994 3.37148 3.40766 3.51430 3.71465 4.16774 4.41118 4.44685 4.48858 4.69949 4.98778 5.09864 5.17500 5.23236 5.28574 5.31370 5.34253 5.39441 5.48597 5.50836 5.52822 5.61568 5.67182 5.70577 5.77720 5.80321 5.85221 5.86734 5.90984 5.95367 5.99052 6.06507 6.14425 6.19891 6.25762 6.28589 6.35668 7.03762 7.11334 7.13369 7.47562 7.58463 7.93945 8.25767 8.47356 8.92687 9.15029 9.57600 11.05162 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022172 B = 0.003661 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.528297 B = 7647.378806 C = 7904.392788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.081 0.919 4 C 0.044 3.956 5 N -0.523 5.523 6 C 0.066 3.934 7 C -0.135 4.135 8 C 0.504 3.496 9 O -0.546 6.546 10 N -0.604 5.604 11 C 0.085 3.915 12 C 0.244 3.756 13 C -0.525 4.525 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.095 3.905 22 C -0.166 4.166 23 C -0.125 4.125 24 C -0.129 4.129 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.031 0.969 38 H 0.043 0.957 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 18.256 12.461 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.100 0.900 4 C -0.084 4.084 5 N -0.247 5.247 6 C -0.061 4.061 7 C -0.175 4.175 8 C 0.291 3.709 9 O -0.424 6.424 10 N -0.336 5.336 11 C -0.060 4.060 12 C 0.125 3.875 13 C -0.563 4.563 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C 0.006 3.994 22 C -0.224 4.224 23 C -0.183 4.183 24 C -0.167 4.167 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.818 17.908 12.558 22.203 hybrid contribution -1.455 -1.148 -0.218 1.866 sum -5.273 16.759 12.339 21.470 Atomic orbital electron populations 1.21721 0.94570 1.01956 1.01748 1.22268 0.95425 0.99541 0.94822 0.90016 1.23153 0.88914 0.98483 0.97863 1.63573 1.26807 1.27420 1.06904 1.22078 1.02090 0.88727 0.93253 1.21637 1.03251 0.96459 0.96187 1.20335 0.77975 0.89986 0.82652 1.90656 1.51477 1.41489 1.58817 1.48157 1.68438 1.11371 1.05628 1.21623 0.99983 0.88604 0.95750 1.19277 0.96449 0.77686 0.94086 1.21480 0.92900 1.00761 1.41204 0.92496 1.24942 0.96384 0.97181 0.95663 1.69946 1.23604 1.15492 1.44376 0.86450 0.83378 0.79800 0.77840 1.19850 1.20939 1.20875 1.21707 0.95087 0.95211 0.87431 1.22398 1.02871 0.96052 1.01053 1.21732 0.98253 0.99016 0.99307 1.22964 0.95831 0.99797 0.98119 0.92618 0.92594 0.92400 0.90361 0.93337 0.93636 0.89668 0.89909 0.89044 0.93764 0.90921 0.92448 0.95071 0.93875 0.92793 0.91459 0.92439 0.91995 0.92463 0.92882 0.92356 0.90941 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.29 37.16 0.35 -0.78 16 2 C -0.10 -0.91 3.63 -88.48 -0.32 -1.24 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.04 0.48 5.12 -2.30 -0.01 0.46 16 5 N -0.52 -6.38 4.81 -215.75 -1.04 -7.42 16 6 C 0.07 0.98 2.96 -3.83 -0.01 0.97 16 7 C -0.13 -2.08 4.26 -27.88 -0.12 -2.19 16 8 C 0.50 10.69 7.67 -10.99 -0.08 10.61 16 9 O -0.55 -13.92 15.56 5.55 0.09 -13.83 16 10 N -0.60 -13.14 2.86 -182.95 -0.52 -13.66 16 11 C 0.08 1.37 10.24 59.85 0.61 1.99 16 12 C 0.24 6.54 5.16 -5.19 -0.03 6.51 16 13 C -0.52 -15.15 9.39 -34.44 -0.32 -15.48 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 17 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.09 1.02 1.15 -130.61 -0.15 0.87 16 22 C -0.17 -1.89 7.15 37.16 0.27 -1.62 16 23 C -0.13 -1.20 8.71 37.16 0.32 -0.88 16 24 C -0.13 -1.19 5.48 -24.91 -0.14 -1.33 16 25 H 0.05 0.47 8.11 -51.93 -0.42 0.05 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.58 7.56 -51.93 -0.39 0.19 16 30 H 0.05 0.75 6.60 -51.93 -0.34 0.41 16 31 H 0.09 1.35 6.29 -51.93 -0.33 1.02 16 32 H 0.08 1.16 6.67 -51.93 -0.35 0.82 16 33 H 0.09 1.27 8.11 -51.93 -0.42 0.85 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 37 H 0.03 0.84 8.07 -51.94 -0.42 0.42 16 38 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 40 H 0.07 0.82 6.68 -51.93 -0.35 0.48 16 41 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 42 H 0.06 0.78 6.64 -51.93 -0.34 0.44 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.59 7.83 -51.93 -0.41 0.18 16 47 H 0.07 0.66 7.72 -51.93 -0.40 0.26 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -32.67 364.66 -8.66 -41.33 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -8.66 Total: -2.33 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 0.27 Total: -0.46 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -0.82 Total: -47.29 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.67 -8.66 -41.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356985407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.111 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds