Wall clock time and date at job start Tue Mar 31 2020 06:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.90420 * 2 1 4 4 C 1.54912 * 110.98840 * 236.13425 * 2 1 3 5 5 N 1.47844 * 104.79423 * 204.83955 * 4 2 1 6 6 C 1.46898 * 111.00065 * 146.36520 * 5 4 2 7 7 C 1.52995 * 109.47089 * 66.64183 * 6 5 4 8 8 C 1.50703 * 109.47037 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00046 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00040 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99923 * 359.97438 * 10 8 7 12 12 C 1.46504 * 120.00389 * 179.97438 * 10 8 7 13 13 C 1.50704 * 109.46761 * 89.99652 * 12 10 8 14 14 H 1.07999 * 120.00089 * 0.02562 * 13 12 10 15 15 C 1.37877 * 119.99778 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00102 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00142 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46993 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47257 * 119.99881 * 17 15 13 20 20 H 1.48500 * 109.47101 * 240.00067 * 17 15 13 21 21 C 1.47440 * 108.56757 * 24.09379 * 5 4 2 22 22 C 1.53001 * 109.88603 * 118.41599 * 21 5 4 23 23 C 1.53000 * 109.89455 * 239.60330 * 21 5 4 24 24 C 1.54317 * 107.23480 * 359.01518 * 21 5 4 25 25 H 1.08999 * 109.47439 * 182.41101 * 1 2 3 26 26 H 1.08998 * 109.47417 * 302.41146 * 1 2 3 27 27 H 1.09000 * 109.46986 * 62.41272 * 1 2 3 28 28 H 1.08996 * 110.37313 * 86.00906 * 4 2 1 29 29 H 1.09001 * 110.47051 * 323.71740 * 4 2 1 30 30 H 1.09001 * 109.46784 * 306.63865 * 6 5 4 31 31 H 1.09006 * 109.47410 * 186.63998 * 6 5 4 32 32 H 1.09006 * 109.47021 * 299.99396 * 7 6 5 33 33 H 1.08997 * 109.47806 * 59.99710 * 7 6 5 34 34 H 1.08997 * 109.46992 * 90.00852 * 11 10 8 35 35 H 1.09006 * 109.46976 * 209.99901 * 11 10 8 36 36 H 1.08991 * 109.47197 * 330.00057 * 11 10 8 37 37 H 1.08988 * 109.47553 * 209.99673 * 12 10 8 38 38 H 1.09001 * 109.46615 * 330.00036 * 12 10 8 39 39 H 0.96999 * 120.00095 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.46945 * 64.72524 * 22 21 5 41 41 H 1.09008 * 109.47190 * 184.72385 * 22 21 5 42 42 H 1.08995 * 109.47474 * 304.72235 * 22 21 5 43 43 H 1.09004 * 109.46833 * 60.00056 * 23 21 5 44 44 H 1.08995 * 109.47402 * 180.02562 * 23 21 5 45 45 H 1.09003 * 109.47123 * 300.00405 * 23 21 5 46 46 H 1.09004 * 110.70289 * 219.33461 * 24 21 5 47 47 H 1.08993 * 110.71142 * 96.09737 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9189 1.0182 0.0000 4 6 2.0849 -0.8060 -1.2010 5 7 3.4312 -1.2421 -0.7732 6 6 3.7611 -2.5589 -1.3345 7 6 3.8948 -2.4465 -2.8544 8 6 4.2326 -3.7976 -3.4303 9 8 4.3548 -4.7559 -2.6970 10 7 4.3998 -3.9407 -4.7599 11 6 4.2527 -2.7830 -5.6455 12 6 4.7288 -5.2540 -5.3197 13 6 3.4571 -5.9899 -5.6549 14 1 2.4997 -5.5257 -5.4699 15 6 3.5159 -7.2560 -6.1978 16 7 4.6817 -7.8211 -6.4236 17 14 1.9397 -8.1679 -6.6141 18 1 0.7709 -7.3200 -6.2673 19 1 1.9148 -8.4760 -8.0665 20 1 1.8802 -9.4330 -5.8386 21 6 3.4692 -1.2712 0.7004 22 6 3.7484 -2.6950 1.1858 23 6 4.5540 -0.3214 1.2121 24 6 2.0857 -0.8073 1.2027 25 1 -0.3634 -1.0267 0.0432 26 1 -0.3634 0.5508 0.8675 27 1 -0.3633 0.4759 -0.9108 28 1 2.1544 -0.1712 -2.0843 29 1 1.4528 -1.6704 -1.4046 30 1 2.9686 -3.2666 -1.0907 31 1 4.7031 -2.9085 -0.9118 32 1 2.9528 -2.0971 -3.2772 33 1 4.6871 -1.7388 -3.0982 34 1 5.2175 -2.2894 -5.7615 35 1 3.8947 -3.1144 -6.6203 36 1 3.5365 -2.0840 -5.2138 37 1 5.3230 -5.1250 -6.2241 38 1 5.2988 -5.8279 -4.5891 39 1 4.7231 -8.7120 -6.8052 40 1 4.7447 -2.9994 0.8650 41 1 3.6920 -2.7255 2.2740 42 1 3.0076 -3.3744 0.7645 43 1 4.3359 0.6930 0.8780 44 1 4.5764 -0.3486 2.3015 45 1 5.5229 -0.6322 0.8213 46 1 2.1885 -0.1692 2.0805 47 1 1.4475 -1.6636 1.4199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356985407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:07 Heat of formation + Delta-G solvation = -62.300679 kcal Electronic energy + Delta-G solvation = -23234.051517 eV Core-core repulsion = 20029.515842 eV Total energy + Delta-G solvation = -3204.535675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.21449 -40.34170 -36.63527 -35.13286 -34.72434 -34.10251 -31.14895 -29.58487 -28.52650 -27.60595 -27.24766 -26.06213 -25.02411 -23.02939 -21.33082 -19.87300 -19.68149 -18.71804 -17.82620 -17.23545 -16.82879 -16.75454 -16.19808 -15.95754 -15.66173 -14.92002 -14.75221 -14.34273 -14.27455 -14.08512 -13.87536 -13.60029 -13.53747 -13.45280 -13.23834 -13.12015 -12.87081 -12.78166 -12.67391 -12.60268 -12.49762 -12.25273 -12.22930 -12.02614 -11.76036 -11.68440 -11.53124 -11.44787 -11.21839 -10.66899 -10.60586 -9.42722 -9.27973 -8.24292 -6.39538 1.34446 1.36919 1.48791 1.83567 2.27974 2.41445 2.98161 3.05065 3.60655 3.63844 3.86875 3.88159 4.07735 4.14605 4.21661 4.30651 4.39916 4.43602 4.58975 4.62016 4.66142 4.69864 4.71991 4.80407 4.82284 4.90692 4.91958 4.95625 4.98895 5.01555 5.04288 5.08708 5.09203 5.19432 5.22280 5.25441 5.32668 5.44930 5.54703 5.54842 5.83253 6.04410 6.09777 6.13721 6.67974 6.78469 7.26375 7.47737 8.83038 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022172 B = 0.003661 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.528297 B = 7647.378806 C = 7904.392788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 H 0.093 0.907 4 C 0.037 3.963 5 N -0.520 5.520 6 C 0.078 3.922 7 C -0.115 4.115 8 C 0.494 3.506 9 O -0.601 6.601 10 N -0.612 5.612 11 C 0.079 3.921 12 C 0.258 3.742 13 C -0.543 4.543 14 H 0.052 0.948 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.969 3.031 18 H -0.267 1.267 19 H -0.267 1.267 20 H -0.281 1.281 21 C 0.089 3.911 22 C -0.163 4.163 23 C -0.120 4.120 24 C -0.126 4.126 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.034 0.966 30 H 0.020 0.980 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.024 0.976 38 H -0.004 1.004 39 H 0.268 0.732 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.046 0.954 46 H 0.091 0.909 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.971 20.800 12.642 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 H 0.111 0.889 4 C -0.090 4.090 5 N -0.244 5.244 6 C -0.051 4.051 7 C -0.155 4.155 8 C 0.283 3.717 9 O -0.483 6.483 10 N -0.343 5.343 11 C -0.063 4.063 12 C 0.137 3.863 13 C -0.582 4.582 14 H 0.070 0.930 15 C -0.192 4.192 16 N -0.569 5.569 17 Si 0.793 3.207 18 H -0.191 1.191 19 H -0.192 1.192 20 H -0.207 1.207 21 C 0.000 4.000 22 C -0.221 4.221 23 C -0.178 4.178 24 C -0.164 4.164 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.042 0.958 38 H 0.014 0.986 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.109 0.891 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.431 20.509 12.723 24.738 hybrid contribution -0.902 -1.929 -0.250 2.144 sum -6.333 18.580 12.472 23.257 Atomic orbital electron populations 1.21701 0.93678 1.01629 1.02714 1.22255 0.96094 0.99545 0.93398 0.88884 1.23272 0.88006 0.98386 0.99352 1.63628 1.27778 1.25093 1.07930 1.21837 1.00486 0.89741 0.93020 1.21545 1.04982 0.92856 0.96121 1.21382 0.76606 0.91657 0.82065 1.90625 1.53710 1.43890 1.60064 1.48207 1.68169 1.11108 1.06783 1.21929 1.02576 0.87143 0.94641 1.18753 0.95248 0.79989 0.92357 1.21733 0.93222 1.01612 1.41591 0.92953 1.25885 1.00036 0.98029 0.95286 1.70061 1.25913 1.16041 1.44838 0.85347 0.78949 0.78098 0.78282 1.19149 1.19201 1.20728 1.21866 0.96674 0.94907 0.86595 1.22360 1.01246 0.96406 1.02078 1.21695 0.97006 0.98804 1.00295 1.22955 0.94521 0.99922 0.99009 0.93635 0.91289 0.91768 0.89186 0.94788 0.96128 0.91368 0.87664 0.86421 0.91098 0.91583 0.88840 0.95850 0.98565 0.92359 0.92987 0.90700 0.94055 0.91709 0.91256 0.93507 0.89058 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.29 71.98 0.67 -1.19 16 2 C -0.09 -1.44 3.63 -9.41 -0.03 -1.48 16 3 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 4 C 0.04 0.74 5.12 86.78 0.44 1.18 16 5 N -0.52 -11.99 4.81 -836.51 -4.02 -16.01 16 6 C 0.08 2.32 2.96 86.30 0.26 2.57 16 7 C -0.12 -3.40 4.26 29.85 0.13 -3.27 16 8 C 0.49 21.31 7.67 87.66 0.67 21.99 16 9 O -0.60 -32.27 15.56 -3.04 -0.05 -32.32 16 10 N -0.61 -26.84 2.86 -851.12 -2.43 -29.28 16 11 C 0.08 2.42 10.24 127.77 1.31 3.73 16 12 C 0.26 14.38 5.16 85.63 0.44 14.83 16 13 C -0.54 -32.12 9.39 25.60 0.24 -31.88 16 14 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 15 C 0.01 0.38 5.46 84.65 0.46 0.84 16 16 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 17 Si 0.97 45.63 29.54 68.60 2.03 47.65 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 21 C 0.09 1.78 1.15 3.87 0.00 1.79 16 22 C -0.16 -3.76 7.15 71.98 0.51 -3.24 16 23 C -0.12 -2.05 8.71 71.98 0.63 -1.43 16 24 C -0.13 -2.06 5.48 31.77 0.17 -1.89 16 25 H 0.04 0.70 8.11 -2.39 -0.02 0.68 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.03 0.78 7.56 -2.39 -0.02 0.76 16 30 H 0.02 0.71 6.60 -2.39 -0.02 0.69 16 31 H 0.07 2.25 6.29 -2.38 -0.01 2.24 16 32 H 0.11 2.68 6.67 -2.38 -0.02 2.66 16 33 H 0.12 2.93 8.11 -2.39 -0.02 2.91 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 2.11 8.07 -2.38 -0.02 2.09 16 36 H 0.09 2.18 6.44 -2.39 -0.02 2.16 16 37 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 38 H 0.00 -0.24 7.42 -2.39 -0.02 -0.26 16 39 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 40 H 0.05 1.33 6.68 -2.39 -0.02 1.32 16 41 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.04 1.10 6.64 -2.39 -0.02 1.09 16 43 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.09 1.18 7.83 -2.38 -0.02 1.16 16 47 H 0.06 1.10 7.72 -2.39 -0.02 1.08 16 Total: -1.00 -74.13 364.66 2.63 -71.50 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.91 Total: 12.79 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 5.91 Total: 2.56 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -6.17 Total: -102.19 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.05 Total: -32.32 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -74.13 2.63 -71.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356985407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.204 kcal (2) G-P(sol) polarization free energy of solvation -74.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds