Wall clock time and date at job start Tue Mar 31 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.69877 * 2 1 4 4 C 1.52760 * 109.51042 * 239.88665 * 2 1 3 5 5 C 1.53036 * 109.38040 * 185.70700 * 4 2 1 6 6 C 1.53038 * 109.54112 * 61.23493 * 5 4 2 7 7 C 1.53195 * 109.31316 * 298.63624 * 6 5 4 8 8 N 1.46918 * 109.58476 * 120.35230 * 2 1 3 9 9 C 1.34776 * 120.63170 * 353.42568 * 8 2 1 10 10 O 1.21586 * 120.00359 * 5.04026 * 9 8 2 11 11 N 1.34777 * 120.00012 * 185.04504 * 9 8 2 12 12 C 1.46506 * 120.00039 * 175.02226 * 11 9 8 13 13 C 1.53001 * 109.47093 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47041 * 59.99949 * 13 12 11 15 15 C 1.53003 * 109.47027 * 300.00114 * 13 12 11 16 16 C 1.52997 * 109.47225 * 179.97438 * 13 12 11 17 17 C 1.50698 * 109.47191 * 180.02562 * 16 13 12 18 18 H 1.07997 * 120.00394 * 359.97438 * 17 16 13 19 19 C 1.37881 * 119.99674 * 180.02562 * 17 16 13 20 20 N 1.31512 * 119.99479 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00318 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47252 * 90.00217 * 21 19 17 23 23 H 1.48495 * 109.47190 * 210.00204 * 21 19 17 24 24 H 1.48498 * 109.47291 * 330.00418 * 21 19 17 25 25 H 1.08993 * 109.47332 * 304.46701 * 1 2 3 26 26 H 1.09003 * 109.47128 * 64.46684 * 1 2 3 27 27 H 1.09002 * 109.46885 * 184.46126 * 1 2 3 28 28 H 1.08997 * 109.56579 * 65.66723 * 4 2 1 29 29 H 1.09002 * 109.35626 * 305.61003 * 4 2 1 30 30 H 1.09007 * 109.46026 * 301.21794 * 5 4 2 31 31 H 1.09004 * 109.46164 * 181.26037 * 5 4 2 32 32 H 1.09004 * 109.50263 * 178.68111 * 6 5 4 33 33 H 1.09003 * 109.49445 * 58.58957 * 6 5 4 34 34 H 1.08994 * 109.58321 * 294.84164 * 7 6 5 35 35 H 1.09001 * 109.58400 * 174.42187 * 7 6 5 36 36 H 0.96999 * 119.99911 * 355.01822 * 11 9 8 37 37 H 1.08993 * 109.46753 * 60.00197 * 12 11 9 38 38 H 1.09001 * 109.46889 * 299.99839 * 12 11 9 39 39 H 1.09002 * 109.47248 * 299.99982 * 14 13 12 40 40 H 1.09001 * 109.47515 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.47221 * 59.99808 * 14 13 12 42 42 H 1.09005 * 109.46603 * 179.97438 * 15 13 12 43 43 H 1.08996 * 109.47327 * 299.99621 * 15 13 12 44 44 H 1.09002 * 109.47256 * 60.00022 * 15 13 12 45 45 H 1.09001 * 109.46905 * 300.00112 * 16 13 12 46 46 H 1.09001 * 109.47025 * 59.99908 * 16 13 12 47 47 H 0.97008 * 119.99852 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 6 3.5638 -0.8460 -1.1726 6 6 3.9523 -1.6685 0.0582 7 6 3.4644 -0.9518 1.3211 8 7 2.0225 -0.6994 1.1945 9 6 1.1673 -1.1069 2.1531 10 8 -0.0312 -0.9793 1.9929 11 7 1.6405 -1.6558 3.2894 12 6 0.7198 -1.9985 4.3762 13 6 1.5075 -2.6020 5.5408 14 6 2.5339 -1.5848 6.0436 15 6 2.2304 -3.8647 5.0676 16 6 0.5461 -2.9592 6.6761 17 6 1.3220 -3.5530 7.8234 18 1 2.3937 -3.6648 7.7501 19 6 0.6636 -3.9545 8.9663 20 7 1.3408 -4.4722 9.9678 21 14 -1.1901 -3.7618 9.0930 22 1 -1.8515 -4.9883 8.5798 23 1 -1.5701 -3.5518 10.5131 24 1 -1.6224 -2.5921 8.2867 25 1 -0.3633 0.5815 0.8472 26 1 -0.3633 0.4430 -0.9273 27 1 -0.3633 -1.0246 0.0799 28 1 1.7633 -0.1564 -2.1349 29 1 1.5965 -1.7168 -1.2936 30 1 4.0058 0.1477 -1.0995 31 1 3.9315 -1.3415 -2.0713 32 1 5.0364 -1.7760 0.0967 33 1 3.4905 -2.6540 -0.0023 34 1 3.9928 -0.0048 1.4311 35 1 3.6503 -1.5797 2.1925 36 1 2.5908 -1.8241 3.3876 37 1 -0.0111 -2.7234 4.0181 38 1 0.2045 -1.0990 4.7130 39 1 3.2190 -1.3299 5.2350 40 1 3.0955 -2.0148 6.8730 41 1 2.0190 -0.6852 6.3807 42 1 2.7919 -4.2943 5.8972 43 1 1.4992 -4.5893 4.7094 44 1 2.9154 -3.6097 4.2590 45 1 0.0315 -2.0593 7.0130 46 1 -0.1855 -3.6837 6.3182 47 1 0.8776 -4.7551 10.7718 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358687203.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:05 Heat of formation + Delta-G solvation = -34.906335 kcal Electronic energy + Delta-G solvation = -23568.525060 eV Core-core repulsion = 20365.177292 eV Total energy + Delta-G solvation = -3203.347767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.67328 -38.10371 -36.91421 -34.24269 -32.85991 -32.52599 -31.65079 -27.94617 -27.48479 -26.54561 -26.08671 -24.65899 -22.77279 -21.95198 -21.06648 -19.68173 -18.34318 -17.41488 -16.81079 -16.19903 -15.70044 -14.83837 -14.76936 -14.58401 -14.20707 -14.11789 -13.94908 -13.49668 -13.34741 -13.23050 -12.71886 -12.54773 -12.30293 -12.26516 -12.20530 -11.87667 -11.31505 -11.20535 -11.18237 -11.08768 -10.99901 -10.94163 -10.82880 -10.60034 -10.44683 -9.94949 -9.74185 -9.55077 -9.09768 -8.97737 -8.80791 -8.52471 -8.42783 -6.03341 -4.00446 2.70828 3.32852 3.35734 3.40771 3.45300 3.99757 4.46929 4.49943 4.56502 4.58242 4.79764 5.02722 5.11999 5.21451 5.29623 5.35501 5.43542 5.45424 5.57114 5.57695 5.61376 5.65814 5.72873 5.76981 5.80054 6.00152 6.13603 6.14008 6.19000 6.23228 6.35170 6.36962 6.53003 6.60874 6.70161 6.80535 6.95302 7.02518 7.03179 7.06805 7.22428 7.38836 7.79287 8.11954 8.53821 8.79272 9.00729 9.59551 11.09404 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031713 B = 0.003704 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.711924 B = 7556.845939 C = 8139.771792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.133 4.133 5 C -0.119 4.119 6 C -0.136 4.136 7 C 0.111 3.889 8 N -0.630 5.630 9 C 0.703 3.297 10 O -0.586 6.586 11 N -0.739 5.739 12 C 0.144 3.856 13 C -0.063 4.063 14 C -0.127 4.127 15 C -0.127 4.127 16 C -0.001 4.001 17 C -0.510 4.510 18 H 0.078 0.922 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.265 1.265 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.392 0.608 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.029 0.971 45 H 0.018 0.982 46 H 0.014 0.986 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.746 8.139 -21.633 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.058 3.942 3 H 0.083 0.917 4 C -0.171 4.171 5 C -0.156 4.156 6 C -0.174 4.174 7 C -0.012 4.012 8 N -0.369 5.369 9 C 0.405 3.595 10 O -0.465 6.465 11 N -0.397 5.397 12 C 0.021 3.979 13 C -0.064 4.064 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.039 4.039 17 C -0.548 4.548 18 H 0.096 0.904 19 C -0.134 4.134 20 N -0.544 5.544 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.190 1.190 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.230 0.770 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.048 0.952 45 H 0.037 0.963 46 H 0.032 0.968 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.826 8.173 -21.529 23.528 hybrid contribution -0.405 -0.116 0.282 0.507 sum 4.421 8.057 -21.247 23.149 Atomic orbital electron populations 1.22186 0.92398 1.04346 1.00189 1.20973 0.95940 0.94234 0.83043 0.91694 1.21966 0.95818 1.01672 0.97676 1.21503 0.95924 1.00323 0.97873 1.21926 1.01119 0.99639 0.94735 1.21605 0.81153 1.00185 0.98282 1.47318 1.06234 1.62079 1.21284 1.15985 0.85025 0.78422 0.80066 1.90954 1.13729 1.62313 1.79461 1.45636 1.11499 1.66648 1.15902 1.21472 0.91505 0.99524 0.85432 1.20697 0.96569 0.94981 0.94116 1.21758 0.98079 0.98401 1.00189 1.21761 0.99514 0.97160 1.00006 1.19583 0.94614 0.96465 0.93269 1.21083 0.95797 1.39955 0.97994 0.90420 1.24997 0.97964 0.94749 0.95734 1.69905 1.35819 1.42699 1.05938 0.86855 0.86599 0.79179 0.77128 1.20374 1.21529 1.18959 0.90935 0.94468 0.90722 0.90901 0.91452 0.91824 0.91760 0.90701 0.91379 0.91424 0.90393 0.77003 0.92059 0.92172 0.95218 0.90932 0.93400 0.90931 0.93397 0.95244 0.96349 0.96790 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 7.59 37.16 0.28 -1.38 16 2 C 0.16 1.71 3.47 -67.82 -0.24 1.47 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 4 C -0.13 -1.11 5.35 -26.84 -0.14 -1.25 16 5 C -0.12 -0.83 5.88 -26.69 -0.16 -0.98 16 6 C -0.14 -1.01 6.08 -26.61 -0.16 -1.17 16 7 C 0.11 0.99 6.39 -3.71 -0.02 0.97 16 8 N -0.63 -7.47 2.98 -171.17 -0.51 -7.98 16 9 C 0.70 10.79 8.21 -86.92 -0.71 10.07 16 10 O -0.59 -10.76 11.75 5.29 0.06 -10.70 16 11 N -0.74 -10.86 4.87 -65.22 -0.32 -11.18 16 12 C 0.14 2.49 4.57 -4.04 -0.02 2.47 16 13 C -0.06 -1.17 0.54 -154.51 -0.08 -1.25 16 14 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 15 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 16 C 0.00 -0.03 3.11 -27.89 -0.09 -0.12 16 17 C -0.51 -13.68 8.20 -34.44 -0.28 -13.96 16 18 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 19 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 20 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 21 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 25 H 0.07 1.06 6.80 -51.93 -0.35 0.71 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 1.10 6.69 -51.93 -0.35 0.75 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.68 5.65 -51.93 -0.29 0.38 16 36 H 0.39 5.00 3.65 -40.82 -0.15 4.85 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 40 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 45 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 46 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 347.33 15.07 5.23 5.23 Total: -1.00 -30.78 347.33 -8.83 -39.61 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.28 Total: 1.76 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.12 Total: -7.18 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.05 Total: -45.66 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.06 Total: -10.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.78 -8.83 -39.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358687203.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.709 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds