Wall clock time and date at job start Tue Mar 31 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.57842 * 2 1 4 4 C 1.53183 * 109.58931 * 120.42674 * 2 1 3 5 5 C 1.53036 * 109.31309 * 174.42286 * 4 2 1 6 6 C 1.53040 * 109.53815 * 298.63422 * 5 4 2 7 7 C 1.52762 * 109.38185 * 61.24280 * 6 5 4 8 8 N 1.46923 * 109.58689 * 239.72169 * 2 1 3 9 9 C 1.34780 * 120.62707 * 6.57435 * 8 2 1 10 10 O 1.21584 * 120.00545 * 5.65071 * 9 8 2 11 11 N 1.34776 * 119.99718 * 185.37896 * 9 8 2 12 12 C 1.46501 * 120.00049 * 175.20763 * 11 9 8 13 13 C 1.53003 * 109.47366 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47132 * 300.00266 * 13 12 11 15 15 C 1.53007 * 109.46842 * 59.99621 * 13 12 11 16 16 C 1.52995 * 109.47613 * 179.97438 * 13 12 11 17 17 C 1.50700 * 109.47419 * 180.02562 * 16 13 12 18 18 H 1.07996 * 119.99727 * 0.02562 * 17 16 13 19 19 C 1.37872 * 119.99713 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00420 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99629 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47178 * 60.00269 * 21 19 17 23 23 H 1.48511 * 109.47150 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47418 * 300.00094 * 21 19 17 25 25 H 1.08996 * 109.47005 * 172.80256 * 1 2 3 26 26 H 1.09004 * 109.47199 * 292.79737 * 1 2 3 27 27 H 1.08999 * 109.47717 * 52.79880 * 1 2 3 28 28 H 1.09005 * 109.49875 * 294.37539 * 4 2 1 29 29 H 1.08997 * 109.49926 * 54.47106 * 4 2 1 30 30 H 1.09001 * 109.46182 * 58.65585 * 5 4 2 31 31 H 1.09001 * 109.46381 * 178.62596 * 5 4 2 32 32 H 1.09003 * 109.49950 * 181.30997 * 6 5 4 33 33 H 1.08998 * 109.50056 * 301.37765 * 6 5 4 34 34 H 1.08996 * 109.51004 * 185.70768 * 7 6 5 35 35 H 1.08995 * 109.43523 * 65.41937 * 7 6 5 36 36 H 0.96999 * 120.00417 * 355.20308 * 11 9 8 37 37 H 1.09001 * 109.47076 * 299.99367 * 12 11 9 38 38 H 1.09000 * 109.47243 * 59.99674 * 12 11 9 39 39 H 1.09004 * 109.47406 * 59.99382 * 14 13 12 40 40 H 1.08997 * 109.47565 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.46878 * 299.99585 * 14 13 12 42 42 H 1.09006 * 109.46761 * 60.00418 * 15 13 12 43 43 H 1.08998 * 109.46999 * 180.02562 * 15 13 12 44 44 H 1.08995 * 109.47139 * 300.00005 * 15 13 12 45 45 H 1.09006 * 109.47269 * 300.00365 * 16 13 12 46 46 H 1.09006 * 109.47075 * 59.99651 * 16 13 12 47 47 H 0.97003 * 120.00117 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7309 1.2444 5 6 3.5675 -0.8493 1.1689 6 6 3.9569 -1.6655 -0.0657 7 6 3.4644 -0.9501 -1.3224 8 7 2.0226 -0.6979 -1.1954 9 6 1.1673 -1.1042 -2.1545 10 8 -0.0092 -0.8050 -2.0865 11 7 1.6172 -1.8374 -3.1920 12 6 0.6727 -2.3677 -4.1784 13 6 1.4369 -3.1565 -5.2437 14 6 2.4382 -2.2337 -5.9412 15 6 2.1863 -4.3143 -4.5812 16 6 0.4505 -3.7109 -6.2735 17 6 1.2032 -4.4884 -7.3223 18 1 2.2776 -4.5784 -7.2603 19 6 0.5201 -5.0846 -8.3609 20 7 -0.7883 -4.9754 -8.4361 21 14 1.4532 -6.0477 -9.6614 22 1 2.1805 -7.1714 -9.0184 23 1 0.4957 -6.5859 -10.6609 24 1 2.4250 -5.1520 -10.3385 25 1 -0.3633 -1.0195 -0.1288 26 1 -0.3634 0.3982 0.9474 27 1 -0.3634 0.6213 -0.8185 28 1 1.7661 -0.1694 2.1366 29 1 1.6031 -1.7269 1.2891 30 1 4.0062 0.1461 1.0994 31 1 3.9379 -1.3475 2.0649 32 1 5.0413 -1.7692 -0.1061 33 1 3.4989 -2.6529 -0.0084 34 1 3.6503 -1.5769 -2.1945 35 1 3.9927 -0.0030 -1.4311 36 1 2.5664 -2.0140 -3.2858 37 1 -0.0409 -3.0249 -3.6814 38 1 0.1391 -1.5428 -4.6507 39 1 3.1410 -1.8390 -5.2073 40 1 2.9824 -2.7954 -6.7004 41 1 1.9044 -1.4088 -6.4131 42 1 1.4729 -4.9718 -4.0842 43 1 2.7311 -4.8760 -5.3400 44 1 2.8890 -3.9197 -3.8474 45 1 -0.2626 -4.3685 -5.7762 46 1 -0.0838 -2.8863 -6.7455 47 1 -1.2688 -5.3946 -9.1671 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358687205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:07 Heat of formation + Delta-G solvation = -39.067433 kcal Electronic energy + Delta-G solvation = -23543.108157 eV Core-core repulsion = 20339.579951 eV Total energy + Delta-G solvation = -3203.528206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.61070 -38.01089 -36.82844 -34.16706 -32.82579 -32.54216 -31.57049 -27.68804 -27.01545 -26.49708 -26.03010 -24.61868 -23.02063 -22.02246 -21.06579 -19.59055 -18.37265 -17.37094 -16.38490 -16.11123 -15.54711 -14.78792 -14.71020 -14.53958 -14.39144 -14.10953 -13.94115 -13.51151 -13.18234 -12.99152 -12.73753 -12.49885 -12.22332 -12.05974 -12.03779 -11.82402 -11.24777 -11.14999 -11.09404 -10.99033 -10.92722 -10.85341 -10.81259 -10.61445 -10.36245 -10.24558 -9.85079 -9.27050 -9.04543 -8.91298 -8.74332 -8.36291 -8.34248 -5.98496 -3.99897 2.76576 3.32651 3.38116 3.39236 3.42899 4.04852 4.46001 4.53245 4.59989 4.61895 4.82807 5.05699 5.15903 5.24531 5.36862 5.40858 5.47122 5.54115 5.60919 5.64856 5.67151 5.74721 5.77894 5.79831 5.83636 6.02736 6.19216 6.22859 6.26837 6.29831 6.42502 6.44389 6.61998 6.64273 6.75207 6.88525 7.07888 7.09077 7.09193 7.17572 7.65902 7.78736 8.00135 8.18645 8.42155 8.86231 9.04738 9.63063 11.12944 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033103 B = 0.003528 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.630846 B = 7934.866829 C = 8442.452951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.133 4.133 5 C -0.118 4.118 6 C -0.136 4.136 7 C 0.112 3.888 8 N -0.631 5.631 9 C 0.703 3.297 10 O -0.585 6.585 11 N -0.739 5.739 12 C 0.146 3.854 13 C -0.073 4.073 14 C -0.125 4.125 15 C -0.125 4.125 16 C 0.037 3.963 17 C -0.512 4.512 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.391 0.609 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.026 0.974 45 H 0.018 0.982 46 H 0.019 0.981 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.309 8.685 18.199 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.083 0.917 4 C -0.171 4.171 5 C -0.156 4.156 6 C -0.175 4.175 7 C -0.012 4.012 8 N -0.370 5.370 9 C 0.405 3.595 10 O -0.463 6.463 11 N -0.397 5.397 12 C 0.023 3.977 13 C -0.073 4.073 14 C -0.183 4.183 15 C -0.183 4.183 16 C -0.001 4.001 17 C -0.550 4.550 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.229 0.771 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.260 8.829 18.113 22.176 hybrid contribution 1.012 -0.728 -0.838 1.502 sum 10.272 8.101 17.276 21.670 Atomic orbital electron populations 1.22168 0.92456 1.04328 1.00303 1.21044 0.95905 0.94281 0.82930 0.91686 1.22036 0.95792 1.01609 0.97666 1.21498 0.95939 1.00315 0.97837 1.21856 1.01066 0.99744 0.94812 1.21501 0.81245 1.00129 0.98294 1.47342 1.06178 1.62332 1.21171 1.15985 0.84782 0.78933 0.79848 1.90947 1.15717 1.61517 1.78162 1.45673 1.11192 1.56102 1.26745 1.21466 0.90925 0.97114 0.88202 1.20912 0.97127 0.94332 0.94932 1.21744 0.98094 0.99003 0.99426 1.21748 0.99186 0.98100 0.99222 1.19078 0.93155 0.95837 0.91983 1.21147 0.93473 1.32072 1.08307 0.92338 1.25007 0.94790 0.96630 0.98034 1.69955 1.06548 1.44711 1.32177 0.86716 0.79606 0.80385 0.81607 1.20346 1.21403 1.20334 0.91334 0.94341 0.90357 0.90928 0.91444 0.91853 0.91783 0.90751 0.91346 0.90436 0.91534 0.77135 0.92198 0.92006 0.95467 0.91499 0.93344 0.93382 0.91499 0.95483 0.96346 0.96315 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 7.61 37.16 0.28 -1.45 16 2 C 0.16 1.77 3.49 -67.60 -0.24 1.53 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.13 -1.15 5.37 -26.62 -0.14 -1.29 16 5 C -0.12 -0.85 5.89 -26.69 -0.16 -1.01 16 6 C -0.14 -1.05 6.06 -26.83 -0.16 -1.21 16 7 C 0.11 1.03 6.41 -3.93 -0.03 1.00 16 8 N -0.63 -7.76 2.98 -171.18 -0.51 -8.27 16 9 C 0.70 11.21 8.10 -86.92 -0.70 10.50 16 10 O -0.58 -11.19 11.92 5.29 0.06 -11.12 16 11 N -0.74 -11.34 4.87 -65.22 -0.32 -11.66 16 12 C 0.15 2.67 4.57 -4.04 -0.02 2.65 16 13 C -0.07 -1.39 0.54 -154.51 -0.08 -1.48 16 14 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 15 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 16 C 0.04 0.91 4.04 -27.89 -0.11 0.80 16 17 C -0.51 -13.61 7.65 -34.44 -0.26 -13.88 16 18 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 21 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.07 1.04 6.83 -51.93 -0.35 0.68 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 1.18 6.67 -51.93 -0.35 0.84 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.70 5.56 -51.93 -0.29 0.41 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.39 5.18 3.62 -40.82 -0.15 5.03 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 40 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 44 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -30.52 350.94 -9.19 -39.71 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -8.31 Total: 1.82 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -1.12 Total: -6.18 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.09 Total: -45.71 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.06 Total: -11.12 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.52 -9.19 -39.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358687205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.647 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds